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Figs 15-20 in On linyphiid spiders from Java, Indonesia, with the description of three new genera and four new species (Araneae: Linyphiidae)
Figs 15-20. Details of male palp structure of Javanaria gracilipes sp. nov., paratype. (15-16) Right palp, retrolateral and prolateral views, respectively. (17) Palpal tibia, paracymbium and proximal part of cymbium, dorsal view. (18) Distal part of embolus and distal suprategular apophysis, ventral view. (19) Embolic division, ventral view. (20) Distal suprategular apophysis, median membrane and embolic division, dorso-lateral view.
Dataset of Functionally Equivalent Java Methods
<p>This is a dataset of functionally equivalent Java methods.</p> <p>This dataset is published as a supplemental data as the following submission.</p> <p> </p> <p>Yoshiki Higo, Shinsuke Matsumoto, Shinji Kusumoto, and Kazuya Yasuda, "Constructing Dataset of Functionally Equivalent Java Methods Using Automated Test Generation Techniques", submitted to MSR 2022.</p> <p> </p> <p>This dataset includes 276 groups of functionally equivalent Java methods, which have been manually verified by the authors.</p> <p>The 276 groups include 728 Java methods in total.</p>
Text-fig. 2. Distribution of different rock units in the turbidite facies in Majalengka area, West Java, Indonesia. in Lithofacies And Ichnofacies Of Turbidite Deposits, West Java, Indonesia
Text-fig. 2. Distribution of different rock units in the turbidite facies in Majalengka area, West Java, Indonesia.
Text-fig. 6. Shallowing pattern during the Middle Miocene to Late Miocene/Pliocene due to increasing magmatic activity as an external parameter. a: palaeobathymetry map during the Middle Miocene to Pliocene; b: sea level change curve indicating a shallowing pattern; c: relative changes of sea level and magmatic activity curve (Haq et al. 1987, Soeria-Atmadja et al. 1998, Muljana 2012). in Lithofacies And Ichnofacies Of Turbidite Deposits, West Java, Indonesia
Text-fig. 6. Shallowing pattern during the Middle Miocene to Late Miocene/Pliocene due to increasing magmatic activity as an external parameter. a: palaeobathymetry map during the Middle Miocene to Pliocene; b: sea level change curve indicating a shallowing pattern; c: relative changes of sea level and magmatic activity curve (Haq et al. 1987, Soeria-Atmadja et al. 1998, Muljana 2012).
Text-fig. 3. Outcrop cross section of the turbidite facies distribution in the Majalengka, correlated northwest to southeast. The progradation pattern indicated by thickening of sandstone into the basin area are shown. F1 – heterolithic sandstone-mudstone 1; F2 – heterolithic sandstone-mudstone 2; F3 – mudstone facies; F4 – heterolithic fine sand and mudstone; F5 – conglomeratic to massive sandstone facies (Muljana 2012). in Lithofacies And Ichnofacies Of Turbidite Deposits, West Java, Indonesia
Text-fig. 3. Outcrop cross section of the turbidite facies distribution in the Majalengka, correlated northwest to southeast. The progradation pattern indicated by thickening of sandstone into the basin area are shown. F1 – heterolithic sandstone-mudstone 1; F2 – heterolithic sandstone-mudstone 2; F3 – mudstone facies; F4 – heterolithic fine sand and mudstone; F5 – conglomeratic to massive sandstone facies (Muljana 2012).
Text-fig. 4. a: Conglomeratic to massive sandstone facies 1, facies A are composed of Andesit (AF), Clay (CF) and Sandstone (SF) fragments lain on medium-sandstone. b: Conglomeratic to massive sandstone facies, outcropping of massive sandstone facies comprises of fine to medium grain size of grey to yellowish sandstone. c: Heterolithic sandstone-mudstone facies, intercalation of fine sand with silt and shale as type form of heterolithic sandstone mudstone as indicated by a high sand/shale ratio. d: Example outcrops of heterolithic sandstone-mudstone 2 indicated by low sand/shale ratio. e: Heterolithic fine sand and mudstone and mudstone facies, intercalation of thin sandstone and shale. f: Representative of slump deposits outcrops belong to conglomeratic to massive sandstone facies, which is indicated by the intercalation of sandstone and shale and some disturbed beds or layers as seen in slump deposits. The facies type is normally deposited within the basin floor, channel margin or as a product of the overbank deposits. In this figure the slump deposit is shown as internal bedding, some occurred on the bedding-plane. Trend slope measurement of the fold-axis revealed values N 135°E and N 108°E. in Lithofacies And Ichnofacies Of Turbidite Deposits, West Java, Indonesia
Text-fig. 4. a: Conglomeratic to massive sandstone facies 1, facies A are composed of Andesit (AF), Clay (CF) and Sandstone (SF) fragments lain on medium-sandstone. b: Conglomeratic to massive sandstone facies, outcropping of massive sandstone facies comprises of fine to medium grain size of grey to yellowish sandstone. c: Heterolithic sandstone-mudstone facies, intercalation of fine sand with silt and shale as type form of heterolithic sandstone mudstone as indicated by a high sand/shale ratio. d: Example outcrops of heterolithic sandstone-mudstone 2 indicated by low sand/shale ratio. e: Heterolithic fine sand and mudstone and mudstone facies, intercalation of thin sandstone and shale. f: Representative of slump deposits outcrops belong to conglomeratic to massive sandstone facies, which is indicated by the intercalation of sandstone and shale and some disturbed beds or layers as seen in slump deposits. The facies type is normally deposited within the basin floor, channel margin or as a product of the overbank deposits. In this figure the slump deposit is shown as internal bedding, some occurred on the bedding-plane. Trend slope measurement of the fold-axis revealed values N 135°E and N 108°E.
Text-fig. 5. Several trace fossil types found within turbidite facies in Majalengka area (Muljana 2012). (a) Chondrites, (b) Planolites, (c–e) Thalassinoides, (f) Cruziana?. Scale bar 5 cm. in Lithofacies And Ichnofacies Of Turbidite Deposits, West Java, Indonesia
Text-fig. 5. Several trace fossil types found within turbidite facies in Majalengka area (Muljana 2012). (a) Chondrites, (b) Planolites, (c–e) Thalassinoides, (f) Cruziana?. Scale bar 5 cm.
Рис. 16–22. Anomala malivirens sp. nov., гоΛотип (16–19), A. cribrata, Ява (cZ) (20), A. diana, Ассам (cZ) (21) и A. perplexa, синтип, Сикким (NHM) (22): 16 — общий виΔ; 17, 20–22 — эΔеагус сбоку; 18 — парамеры сверху; 19 — парамеры и базаΛьная пΛастика снизу. Масштаб: 16 — 5 мм; 17–22 — 1 мм (Λинейка общая ΔΛя 18 и 19) Figs. 16–22. Anomala malivirens sp. nov., holotype (16–19), A. cribrata, Java (cZ) (20), A. diana, Assam (cZ) (21) и A. perplexa, syntype, Sikkim (NHM) (22): 16 — habitus; 17, 20–22 — aedeagus, lateral view; 18 — parameres, dorsal view; 19 — parameres and basal plate, ventral view. Scale bars: 16 — 5 mm; 17–22 — 1 mm (common bar for 18 and 19) in On the systematics of the Anomalina subtribe in Southeast Asia (Coleoptera: Scarabaeidae: Rutelinae: Anomalini)
Рис. 16–22. Anomala malivirens sp. nov., гоΛотип (16–19), A. cribrata, Ява (cZ) (20), A. diana, Ассам (cZ) (21) и A. perplexa, синтип, Сикким (NHM) (22): 16 — общий виΔ; 17, 20–22 — эΔеагус сбоку; 18 — парамеры сверху; 19 — парамеры и базаΛьная пΛастика снизу. Масштаб: 16 — 5 мм; 17–22 — 1 мм (Λинейка общая ΔΛя 18 и 19) Figs. 16–22. Anomala malivirens sp. nov., holotype (16–19), A. cribrata, Java (cZ) (20), A. diana, Assam (cZ) (21) и A. perplexa, syntype, Sikkim (NHM) (22): 16 — habitus; 17, 20–22 — aedeagus, lateral view; 18 — parameres, dorsal view; 19 — parameres and basal plate, ventral view. Scale bars: 16 — 5 mm; 17–22 — 1 mm (common bar for 18 and 19)
Fig. 8 in Macrochelid mites (Acari: Mesostigmata) associated with dung beetles in Mount Gede-Pangrango National Park, West Java, Indonesia
Fig. 8. Sternal shield of A. Macrocheles gedeensis with l.o.p. connected to l.m.t. and B. of M. persimilis which is disjunct to l.m.t.
Safe Automated Refactoring for Intelligent Parallelization of Java 8 Streams
<p>Streaming APIs are becoming more pervasive in mainstream Object-Oriented programming languages. For example, the Stream API introduced in Java 8 allows for functional-like, MapReduce-style operations in processing both finite and infinite data structures. However, using this API efficiently involves subtle considerations like determining when it is best for stream operations to run in parallel, when running operations in parallel can be less efficient, and when it is safe to run in parallel due to possible lambda expression side-effects. In this paper, we present an automated refactoring approach that assists developers in writing efficient stream code in a semantics-preserving fashion. The approach, based on a novel data ordering and typestate analysis, consists of preconditions for automatically determining when it is safe and possibly advantageous to convert sequential streams to parallel and unorder or de-parallelize already parallel streams. The approach was implemented as a plug-in to the Eclipse IDE, uses the WALA and SAFE analysis frameworks, and was evaluated on 11 Java projects consisting of ~642 thousand lines of code. We found that 36.31% of candidate streams were refactorable, and an average speedup of 3.49 on performance tests was observed. The results indicate that the approach is useful in optimizing stream code to their full potential.</p>
Subject source code for Safe Automated Refactoring for Intelligent Parallelization of Java 8 Streams
<p>The set of open source Java projects packaged as Eclipse projects used for assessing our refactoring. Please refer to the included README.md file for building instructions and the LICENSE.md file for licensing information.<br> </p>
Classifying code comments in Java software systems. Appendix
<p>This dataset refers to "Classifying code comments in Java software systems" paper. It contains a large sample of manual classified code comments. More in deep, code comments are a key software component containing information about the underlying implementation. Several studies have shown that code comments enhance the readability of the code. Nevertheless, not all the comments have the same goal and target audience. In this paper, we investigate how 14 diverse Java open and closed source software projects use code comments, with the aim of understanding their purpose. Through our analysis, we produce a taxonomy of source code comments; subsequently, we investigate how often each category occur by manually classifying more than 40,000 lines of code comments from the aforementioned projects. In addition, we investigate how to automatically classify code comments at line level into our taxonomy using machine learning; initial results are promising and suggest that an accurate classification is within reach, even when training the machine learner on projects different than the target one. Preprint: http://dx.doi.org/10.1007/s10664-019-09694-w</p>
Figures 13–16 in Thamoma, a new genus for Miltochrista vetusta Piepers & Snellen, 1904 from Java (Lepidoptera, Erebidae, Arctiinae)
Figures 13–16. Lithosiini spp.: male (13) and female (14–16) genitalia of type species of the genera. Depositories of the specimens: 13 and 16 in CKC; 14 in RMNH; 15 in NHMUK (©).
Figures 1–8 in Thamoma, a new genus for Miltochrista vetusta Piepers & Snellen, 1904 from Java (Lepidoptera, Erebidae, Arctiinae)
Figures 1–8. Lithosiini spp.: adults of type species of the genera. 5 – type species of the genus-group name Miltasura Roepke, 1946 (synonym of Cyme); 6 – type species of the genus-group name Pallene Walker, 1854 (synonym of Cyme). Depositories of the specimens: 1, 2 and 5 in RMNH; 3 in MWM/ZSM; 4 and 6 in NHMUK (©); 7 and 8 in CKC.
Figure 7 in Ecological conditions of Javan langur (Trachypithecus auratus É. Geoffroy Saint-Hilaire, 1812) in Sokokembang Forest (Central Java, Indonesia) through distribution and food preferences
Figure 7. (a) Javan langur males monitoring their group; (b) langur cubs feeding activities in in Sokokembang forest. Photos by Y.M. Putra.
Figure 6 in Ecological conditions of Javan langur (Trachypithecus auratus É. Geoffroy Saint-Hilaire, 1812) in Sokokembang Forest (Central Java, Indonesia) through distribution and food preferences
Figure 6. (a) Vertical Crown space of tree usage patterns (yellow color indicates the space used for feeding activities, red color space not used), (b) Percentage of vertical crown space of tree usage.
Figura 2 in Uso del lenguaje de programación Java para el conteo digital-automatizado a partir de imágenes de huevos de Aedes aegypti (Linnaeus, 1762) (Diptera: Culicidae)
Figura 2. Conteo automático de huevos de Aedes aegypti mediante una rutina en lenguaje de programación de Java, aprovechando el alto contraste entre el color de los huevos (negro) y el color de la papeleta (blanco). / Figure 2. A Java programming language routine is used to automatically count Aedes aegypti eggs, taking advantage of the high contrast between the color of the eggs (black) and the color of the strip (white).
Figura 3 in Uso del lenguaje de programación Java para el conteo digital-automatizado a partir de imágenes de huevos de Aedes aegypti (Linnaeus, 1762) (Diptera: Culicidae)
Figura 3. Diagrama de cajas de la comparación de la abundancia de huevos de Aedes aegypti contabilizados por colaboradores y mediante JAVA-CERECOVE en las diferentes categorÍas. A. Papeletas con pocos huevos (poco abundante), P= 0,903. B. Papeletas con abundantes huevos (abundante), P= 0,278. C. Papeletas con muy abundantes huevos (muy abundante), P= 0,01491. / Figure 3. A box plot of the abundance of Aedes aegypti eggs counted in different categories by collaborators and JAVA-CERECOVE. A. Pellon strips with few eggs, P = 0.903. B. Strip with abundant eggs, P = 0.278. C. Strip with very abundant eggs, P = 0.01491.
Figura 1 in Uso del lenguaje de programación Java para el conteo digital-automatizado a partir de imágenes de huevos de Aedes aegypti (Linnaeus, 1762) (Diptera: Culicidae)
Figura 1. Papeletas con huevos de Aedes aegypti recolectados a través de ovitrampas y clasificadas en categorÍas. A. Papeleta con pocos huevos (poco abundante). B. Papeleta con abundantes huevos (abundante). C. Papeleta con huevos muy abundantes (muy abundante). / Figure 1. Pellon strips with Aedes aegypti eggs collected through ovitraps are classified into three categories. A. Strip with few eggs (not abundant). B. Strip with abundant eggs (abundant). C. Strip with very abundant eggs (very abundant).
Рис. 1–11. Mimela spp., имаго и ΔетаΛи строения. 1–6 – M. cupidinea sp. n., гоΛотип, самец; 7–8 – M. anopunctata, самец («Tenasserim»); 9 – M. nigrosellata, гоΛотип, самец (о. Ява, «Java coll. Nonfried»); 10–11 – M. gressitti comb. n., паратип, самка. 1, 10 – общий виΔ; 2, 11 – простернаΛьный отросток; 3 – переΔняя Λапка; 4, 7, 9 – эΔеагус, виΔ сбоку; 5, 8 – парамеры, виΔ сверху, 6 – парамеры и базаΛьная пΛастинка, виΔ снизу. Масштабные Λинейки: 1, 4–10 – 2 мм (Λинейка общая ΔΛя 4–9), 2 – 0.2 мм, 3 – 1 мм, 11 – 0.5 мм. Figs 1–11. Mimela spp., imagoes and details of structure. 1–6 – M. cupidinea sp. n., holotype, male; 7–8 – M. anopunctata, male ("Tenasserim"); 9 – M. nigrosellata, holotype, male ("Java coll. Nonfried"); 10–11 –M. gressitti comb. n., paratype, female.1, 10 – habitus; 2, 11 – prosternal process; 3 – fore protarsus; 4, 7, 9 – aedeagus, lateral view; 5, 8 – parameres, dorsal view; 6 – parameres and basal plate, ventral view. Scale bars: 1, 4–10 – 2 mm (common for 4–9), 2 – 0.2 mm, 3 – 1 mm, 11 – 0.5 mm. in A new species of Mimela Kirby, 1825 from Laos with comments on M. gressitti (Frey, 1970), comb. n. (Coleoptera: Scarabaeidae: Rutelinae)
Рис. 1–11. Mimela spp., имаго и ΔетаΛи строения. 1–6 – M. cupidinea sp. n., гоΛотип, самец; 7–8 – M. anopunctata, самец («Tenasserim»); 9 – M. nigrosellata, гоΛотип, самец (о. Ява, «Java coll. Nonfried»); 10–11 – M. gressitti comb. n., паратип, самка. 1, 10 – общий виΔ; 2, 11 – простернаΛьный отросток; 3 – переΔняя Λапка; 4, 7, 9 – эΔеагус, виΔ сбоку; 5, 8 – парамеры, виΔ сверху, 6 – парамеры и базаΛьная пΛастинка, виΔ снизу. Масштабные Λинейки: 1, 4–10 – 2 мм (Λинейка общая ΔΛя 4–9), 2 – 0.2 мм, 3 – 1 мм, 11 – 0.5 мм. Figs 1–11. Mimela spp., imagoes and details of structure. 1–6 – M. cupidinea sp. n., holotype, male; 7–8 – M. anopunctata, male ("Tenasserim"); 9 – M. nigrosellata, holotype, male ("Java coll. Nonfried"); 10–11 –M. gressitti comb. n., paratype, female.1, 10 – habitus; 2, 11 – prosternal process; 3 – fore protarsus; 4, 7, 9 – aedeagus, lateral view; 5, 8 – parameres, dorsal view; 6 – parameres and basal plate, ventral view. Scale bars: 1, 4–10 – 2 mm (common for 4–9), 2 – 0.2 mm, 3 – 1 mm, 11 – 0.5 mm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.