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123 results for “Light microscopy”
(10)-Strobl2022A-DS0006 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0006 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0005 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0004 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
Assessment of microphytobenthos communities in the Kinzig catchment using photosynthesis-related traits, digital light microscopy and 18S-V9 amplicon sequencing
<p>This folder contains the datasets used in the article submitted to Frontiers in Ecology and Evolution in which we investigated the functional and compositional responses of microphytobenthos communities to surrounding land uses in the Kinzig River catchment, central Germany. We measured photosynthetic biomass using a Benthotorch, and analysed the diatom community using a newly developed digital light microscopy approach and 18S-V9 amplicon sequencing to characterise the whole protistan assemblages at sampling sites located in rural vs. urban areas.</p> <p>The folder contain the following datasets:</p> <p>kinzig2021_18SV9_filtered.csv # microphytobenthos 18SV9 amplicon sequencing data</p> <p>kinzig_paper.csv # OMNIDIA output of diatom data from microscopy and diatom subset from 18SV9 amplicon sequencing (including 4 letters OMINIDIA taxa codes for diatoms)</p> <p>kinzig2021_benthotorch.csv # Photosynthetic biomass (BenthoTorch data)</p> <p>Kinzig2021_fieldData.csv # environmental data</p> <p>env_dataKinz2021.csv # environment dataset</p> <p>Kinzig2021_diatDM&18S.R # Rscript used for analysis</p>
◂Fig. 6 Gynoecial development, fruit and seedling of C. crenata %yellow frames), C. cf. grandicalyx %blue frames) and C. sinensis %pink frames; A–F light microscopy, G–K stereo microscopy of endocarp, mesocarp removed; L–O field images; TS in horizontal orientation). A, B TS of anthetic flower %note two to three abortive ovules and strongly stained, peripheral tissue). C, D TS of anthetic flower %note two to three abortive ovules and lignifying portions of prospective mesocarp). E Young fruit %note developing endocarp and flashily pink portions of the mesocarp). F TS of postanthetic flower %note three abortive ovules and lignifying portions of prospective mesocarp). G TS of endocarp, with three developed embryos removed %note scanty endosperm). H Endocarp. J TS of endocarp. K Endocarp. L Immature fruits. M Mature fruits. N Seedlings %note short hypocotyl and long petioles of cotyledons). O Seedlings %note long hypocotyl and short petioles of cotyledons; image taken from cultivated plant, accession number 2012–0005, in the Botanical Garden Munich) %LS, longisection; TS, transverse section; ao, abortive ovule; cot, cotyledon; db, dorsal bundle; c, calyx; ec, endocarp; ens, endosperm; ex, exocarp; fr, fruit; h, hypocotyl; int, integument; lb, lateral bundle; mc, mesocarp; o, ovule; pet, petiolus; sty, style; ut, peripheral tissue; vs, ventral slit) in Observations on flower and fruit anatomy in dioecious species of Cordia (Cordiaceae, Boraginales) with evolutionary interpretations
◂Fig. 6 Gynoecial development, fruit and seedling of C. crenata %yellow frames), C. cf. grandicalyx %blue frames) and C. sinensis %pink frames; A–F light microscopy, G–K stereo microscopy of endocarp, mesocarp removed; L–O field images; TS in horizontal orientation). A, B TS of anthetic flower %note two to three abortive ovules and strongly stained, peripheral tissue). C, D TS of anthetic flower %note two to three abortive ovules and lignifying portions of prospective mesocarp). E Young fruit %note developing endocarp and flashily pink portions of the mesocarp). F TS of postanthetic flower %note three abortive ovules and lignifying portions of prospective mesocarp). G TS of endocarp, with three developed embryos removed %note scanty endosperm). H Endocarp. J TS of endocarp. K Endocarp. L Immature fruits. M Mature fruits. N Seedlings %note short hypocotyl and long petioles of cotyledons). O Seedlings %note long hypocotyl and short petioles of cotyledons; image taken from cultivated plant, accession number 2012–0005, in the Botanical Garden Munich) %LS, longisection; TS, transverse section; ao, abortive ovule; cot, cotyledon; db, dorsal bundle; c, calyx; ec, endocarp; ens, endosperm; ex, exocarp; fr, fruit; h, hypocotyl; int, integument; lb, lateral bundle; mc, mesocarp; o, ovule; pet, petiolus; sty, style; ut, peripheral tissue; vs, ventral slit)
◂Fig. 4 Gynoecium of C. crenata %yellow frames), C. cf. grandicalyx %blue frames) and C. sinensis %pink frames; A–R light microscopy; TS in horizontal orientation). A Secantial section. B, C TS %note cellular organisation). D Secantial section. E, F TS %note cellular organisation). G Secantial section of young gynoecium showing cellular organisation. H–J TS %note lacking cellular organisation, localisation in K–M). K–M LS at different levels from outside to inside of the same specimen %note strongly stained peripheral tissue; asterisks indicate tissue illustrated in H–J). N TS %note dehiscence lines of the prospective endocarp). O, P TS showing transmission tissue and dorsal bundles at top of style. Q vascularisation at base of gynoecium %note strongly stained peripheral tissue). R Vascularisation at base of flower %LS, longisection; TS, transverse section; db, dorsal bundle; dl, dehiscent line; ep, epidermis; lb, lateral bundle; tt, transmission tissue; ut, peripheral tissue; vb, ventral bundle; vs, ventral slit) in Observations on flower and fruit anatomy in dioecious species of Cordia (Cordiaceae, Boraginales) with evolutionary interpretations
◂Fig. 4 Gynoecium of C. crenata %yellow frames), C. cf. grandicalyx %blue frames) and C. sinensis %pink frames; A–R light microscopy; TS in horizontal orientation). A Secantial section. B, C TS %note cellular organisation). D Secantial section. E, F TS %note cellular organisation). G Secantial section of young gynoecium showing cellular organisation. H–J TS %note lacking cellular organisation, localisation in K–M). K–M LS at different levels from outside to inside of the same specimen %note strongly stained peripheral tissue; asterisks indicate tissue illustrated in H–J). N TS %note dehiscence lines of the prospective endocarp). O, P TS showing transmission tissue and dorsal bundles at top of style. Q vascularisation at base of gynoecium %note strongly stained peripheral tissue). R Vascularisation at base of flower %LS, longisection; TS, transverse section; db, dorsal bundle; dl, dehiscent line; ep, epidermis; lb, lateral bundle; tt, transmission tissue; ut, peripheral tissue; vb, ventral bundle; vs, ventral slit)
◂Fig. 3 Gynoecium of C. crenata %yellow frames), C. cf. grandicalyx %blue frames) and C. sinensis %pink frames; A, B stack shot images; C–K light microscopy; G polarised light; TS in horizontal orientation). A, B Anthetic female flower, calyx and corolla partly removed. B LS of gynoecium. C LS of functionally female flower %note strongly stained peripheral tissue of corolla, anther and gynoecium). D LS of gynoecium. E, F TS of functionally female flower %note strongly stained, peripheral tissue). G TS of functionally female flower %note crystal deposition). H LS of ovule %note stalked embryo sac). J TS of functionally male flower with non-functional ovules. K LS of functionally male flower %style lacking, original position indicated by an asterisk) %LS, longisection; TS, transverse section; a,anther; bs, basal septum; c, calyx; car, carpel; co, corolla; db, dorsal bundles; es, embryo sac; fs, false septum; lb, lateral bundles; o, ovule; stg, stigma; sty, style; t, trichomes; tt, transmission tissue; ut, peripheral, strongly stained tissue; vb, ventral bundles; vs, ventral slit) in Observations on flower and fruit anatomy in dioecious species of Cordia (Cordiaceae, Boraginales) with evolutionary interpretations
◂Fig. 3 Gynoecium of C. crenata %yellow frames), C. cf. grandicalyx %blue frames) and C. sinensis %pink frames; A, B stack shot images; C–K light microscopy; G polarised light; TS in horizontal orientation). A, B Anthetic female flower, calyx and corolla partly removed. B LS of gynoecium. C LS of functionally female flower %note strongly stained peripheral tissue of corolla, anther and gynoecium). D LS of gynoecium. E, F TS of functionally female flower %note strongly stained, peripheral tissue). G TS of functionally female flower %note crystal deposition). H LS of ovule %note stalked embryo sac). J TS of functionally male flower with non-functional ovules. K LS of functionally male flower %style lacking, original position indicated by an asterisk) %LS, longisection; TS, transverse section; a,anther; bs, basal septum; c, calyx; car, carpel; co, corolla; db, dorsal bundles; es, embryo sac; fs, false septum; lb, lateral bundles; o, ovule; stg, stigma; sty, style; t, trichomes; tt, transmission tissue; ut, peripheral, strongly stained tissue; vb, ventral bundles; vs, ventral slit)
◂Fig. 1 Morphology of thecate and coccoid cells, with labelled thecal plates. a–c, i, m Light microscopy, d–h, k–l scanning electron microscopy. a Ventral view of strain GeoM*788; b dorsal view of strain GeoM*793; c apical view of strain GeoK*044; d ventral view of strain GeoK*037; e dorsal view of strain GeoM*788; f apical view of strain GeoK*024, with the dehiscence of epithecal opening indicated by a blue line; g antapical view of strain GeoK*044; h leftlateral view of strain GeoM*866; i motile cell of strain GeoK*037; k–m coccoid cells showing variability in shape and size of strains k GeoM*866, l GeoM*793 and m GeoK*024. Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, Sa: anterior sulcal plate, Sd: right sulcal plate, Sp: posterior sulcal plate. Ss: left sulcal plate. Scale bar: 10 µm. UA: 15 kV in Morphological and molecular variability of Peridinium volzii Lemmerm. (Peridiniaceae, Dinophyceae) and its relevance for infraspecific taxonomy
◂Fig. 1 Morphology of thecate and coccoid cells, with labelled thecal plates. a–c, i, m Light microscopy, d–h, k–l scanning electron microscopy. a Ventral view of strain GeoM*788; b dorsal view of strain GeoM*793; c apical view of strain GeoK*044; d ventral view of strain GeoK*037; e dorsal view of strain GeoM*788; f apical view of strain GeoK*024, with the dehiscence of epithecal opening indicated by a blue line; g antapical view of strain GeoK*044; h leftlateral view of strain GeoM*866; i motile cell of strain GeoK*037; k–m coccoid cells showing variability in shape and size of strains k GeoM*866, l GeoM*793 and m GeoK*024. Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, Sa: anterior sulcal plate, Sd: right sulcal plate, Sp: posterior sulcal plate. Ss: left sulcal plate. Scale bar: 10 µm. UA: 15 kV
Fig. 1. Urinary parasites, light microscopy. A in Urinary capillariosis in a free-ranging Marsican brown bear (Ursus arctos marsicanus)
Fig. 1. Urinary parasites, light microscopy. A) Mature capillariid egg, 40X, B) Adult female, vulvar appendix, 40X, C) Adult female, anterior extremity, 40X, D) Adult female, posterior extremity, 40X.
(05)-Strobl2018A-DS0001 – Tribolium castaneum AGOC{Zen1'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(05)-Strobl2018A-DS0001 – <em>Tribolium castaneum</em> AGOC{Zen1'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(05)-Strobl2018A-DS0003 – Tribolium castaneum AGOC{ARP5'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(05)-Strobl2018A-DS0003 – <em>Tribolium castaneum</em> AGOC{ARP5'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(05)-Strobl2018A-DS0002 – Tribolium castaneum AGOC{ARP5'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(05)-Strobl2018A-DS0002 – <em>Tribolium castaneum</em> AGOC{ARP5'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(06)-He2019A-DS0003 – Tribolium castaneum AGOC #6 subline × foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(06)-He2019A-DS0003 – <em>Tribolium castaneum</em> AGOC #6 subline × foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(06)-He2019A-DS0002 – Tribolium castaneum foxQ2-5' line × AGOC #6 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(06)-He2019A-DS0002 – <em>Tribolium castaneum</em> foxQ2-5' line × AGOC #6 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(09)-Pereyra2021A-DS0001--DS0003 – Three Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy
<p>(09)-Pereyra2021A-DS0001--DS0003 – Three <em>Tribolium castaneum</em> long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy</p>
(08)-Strobl2021A-DS0002 – Tribolium castaneum ACOS{ATub'H2B-mRuby} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(08)-Strobl2021A-DS0002 – <em>Tribolium castaneum</em> ACOS{ATub'H2B-mRuby} #1 subline long-term live imaging data of embryonic development acquired with light sheet fluorescence microscopy</p>
(08)-Strobl2021A-DS0001 – Tribolium castaneum AGOC{Zen1'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(08)-Strobl2021A-DS0001 – <em>Tribolium castaneum</em> AGOC{Zen1'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(07)-Ratke2020A-DS0005 – Tribolium castaneum AGOC{Zen1'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(07)-Ratke2020A-DS0005 – <em>Tribolium castaneum</em> AGOC{Zen1'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(07)-Ratke2020A-DS0004 – Tribolium castaneum AGOC{Zen1'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(07)-Ratke2020A-DS0004 – <em>Tribolium castaneum</em> AGOC{Zen1'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(07)-Ratke2020A-DS0003 – Drosophila melanogaster w[*]; P{w[+mC]=His2Av-EGFP.C}2/SM6a line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(07)-Ratke2020A-DS0003 – <em>Drosophila melanogaster</em> w[*]; P{w[+mC]=His2Av-EGFP.C}2/SM6a line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(07)-Ratke2020A-DS0001 – Drosophila melanogaster y[1] w[67c23]; P{w[+mC]=Ubi-GFP.nls}ID-2; P{Ubi-GFP.nls}ID-3 line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(07)-Ratke2020A-DS0001 – <em>Drosophila melanogaster</em> y[1] w[67c23]; P{w[+mC]=Ubi-GFP.nls}ID-2; P{Ubi-GFP.nls}ID-3 line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.