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Dataset results
33 results for “Literature Survey”
Zooplankton paired night and day density and biomass estimates, worldwide literature survey, 1900 - 2016
Zooplankton paired night and day density and biomass full water column estimates were derived from an extensive literature review to assess night and day differences in zooplankton population estimates. Data were collected from 48 published studies and 60 lakes and reservoirs for a total of 870 paired day-night zooplankton observations. Data were only included in analyses if samples were collected at least every 2 m from the surface to greater or equal to 80% of the station depth.
Data from: MSAP markers and global cytosine methylation in plants: a literature survey and comparative analysis for a wild growing species
Methylation of DNA cytosines affects whether transposons are silenced and genes are expressed, and is a major epigenetic mechanism whereby plants respond to environmental change. Analyses of methylation-sensitive amplification polymorphism (MS-AFLP or MSAP) have been often used to assess methyl-cytosine changes in response to stress treatments and, more recently, in ecological studies of wild plant populations. MSAP technique does not require a sequenced reference genome and provides many anonymous loci randomly distributed over the genome for which the methylation status can be ascertained. Scoring of MSAP data, however, is not straightforward, and efforts are still required to standardize this step to make use of the potential to distinguish between methylation at different nucleotide contexts. Furthermore, it is not known how accurately MSAP infers genome-wide cytosine methylation levels in plants. Here, we analyse the relationship between MSAP results and the percentage of global cytosine methylation in genomic DNA obtained by HPLC analysis. A screening of literature revealed that methylation of cytosines at cleavage sites assayed by MSAP was greater than genome-wide estimates obtained by HPLC, and percentages of methylation at different nucleotide contexts varied within and across species. Concurrent HPLC and MSAP analyses of DNA from 200 individuals of the perennial herb Helleborus foetidus confirmed that methyl-cytosine was more frequent in CCGG contexts than in the genome as a whole. In this species, global methylation was unrelated to methylation at the inner CG site. We suggest that global HPLC and context-specific MSAP methylation estimates provide complementary information whose combination can improve our current understanding of methylation-based epigenetic processes in nonmodel plants.
FIGURE 6 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 6. Subcaudals and tubercles on ventral side of the tail of Cyrtodactylus stresemanni, holotype ZSM 249/1911.
Data from: MSAP markers and global cytosine methylation in plants: a literature survey and comparative analysis for a wild growing species
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FIGURE 2 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 2. Mental region of Cyrtodactylus stresemanni, holotype ZSM 249/1911.
FIGURE 1 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 1. Nasal region of Cyrtodactylus stresemanni, holotype ZSM 249/1911.
FIGURE 4 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 4. Preanal groove of Cyrtodactylus stresemanni, holotype ZSM 249/1911.
FIGURE 5 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 5. Dorsal view of anterior part of tail of Cyrtodactylus stresemanni, holotype ZSM 249/1911.
FIGURE 8 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 8. Holotype (ZSM 249/1911) of Cyrtodactylus stresemanni, ventral view.
FIGURE 7 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 7. Holotype (ZSM 249/1911) of Cyrtodactylus stresemanni, dorsal view.
FIGURE 3 in A new species of Cyrtodactylus Gray, 1827 (Squamata: Gekkonidae) from Malaysia including a literature survey of mensural and meristic data in the genus
FIGURE 3. Lateral skin fold with tubercles of Cyrtodactylus stresemanni, holotype ZSM 249/1911.
Metadata of literature survey of common gardens
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Exploring Data Management Challenges and Solutions in Agile Software Development: A Literature Review and Practitioner Survey
<p>This comprehensive dataset for the Systematic Literature Review (SLR) and the survey responses on "Exploring Data Management Challenges and Solutions in Agile Software Development: A Literature Review and Practitioner Survey" contains detailed information on selected studies in the SLR. It features research titles, abstracts, keywords, and authors, along with Scopus-extracted details. The dataset encompasses various data types, such as business, product, process, project, and operational, and details the distribution of these studies across major data management aspects, including integration, collection, quality, and analysis. Additionally, the dataset offers insights into the quality assessment of these studies and covers other data management aspects, providing definitions, challenges, and solutions. Furthermore, it includes studies used for search validation, presenting a comprehensive overview of the distribution of study years across different data management aspects. Additionally, the survey participants' responses (with any personal information redacted or masked) are included.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.