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86
datasets available to search
ShareScore release 0.9.0
Dataset results
86 results for “Loop extrusion”
The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination
GEO Series GSE130224. Mus musculus. 133 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Genome variation profiling by high throughput sequencing.
MCM complexes are barriers that restrict cohesin-mediated loop extrusion [RNA-Seq]
GEO Series GSE196496. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
MCM complexes are barriers that restrict cohesin-mediated loop extrusion
GEO Series GSE196497. Mus musculus; Homo sapiens. 115 samples. Type: Other; Expression profiling by high throughput sequencing.
Characterization of induced cohesin loop extrusion trajectories in living cells [ATAC-seq]
GEO Series GSE278395. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterization of induced cohesin loop extrusion trajectories in living cells [4C-seq]
GEO Series GSE278982. Homo sapiens. 14 samples. Type: Other.
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation [SLAM-seq]
GEO Series GSE277898. Homo sapiens. 84 samples. Type: Other.
Nuclear Morphology is Instructed by the Loop Extrusion Program [RNA-seq]
GEO Series GSE211818. Mus musculus. 40 samples. Type: Expression profiling by high throughput sequencing.
Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III [Micro-C seq]
GEO Series GSE198148. Saccharomyces cerevisiae. 8 samples. Type: Other.
The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination [HTGTS V(D)J-seq]
GEO Series GSE130216. Mus musculus. 76 samples. Type: Genome variation profiling by high throughput sequencing; Other.
Nuclear Morphology is Instructed by the Loop Extrusion Program
GEO Series GSE211820. Mus musculus. 51 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Sensitivity of cohesin-chromatin association to high salt treatment corroborates non-topological mode of loop extrusion
GEO Series GSE166387. Homo sapiens. 46 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Cohesin supercoils DNA during loop extrusion
GEO Series GSE292596. Homo sapiens. 24 samples. Type: Other.
Regulation of cohesin loop extrusion underlies changes in enhancer-promoter interactions during pancreatic cell differentiation (Hi-C)
GEO Series GSE210524. Homo sapiens. 12 samples. Type: Other.
Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms [ChIP-seq]
GEO Series GSE235770. Homo sapiens. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers [Protect-seq]
GEO Series GSE182106. Homo sapiens. 3 samples. Type: Other.
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation [Hi-C]
GEO Series GSE277719. Homo sapiens. 62 samples. Type: Other.
A Mechanism of Cohesin-Dependent Loop Extrusion Organizes Zygotic Genome Architecture
GEO Series GSE100569. Mus musculus. 144 samples. Type: Other.
CTCF couples long-range loop extrusion and diffusion to mediate a diverse Igk repertoire [ChIP-Seq]
GEO Series GSE287935. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcription and loop extrusion cooperatively shape the 3D genome of developing slime mold Dictyostelium discoideum [Hi-C]
GEO Series GSE247396. Dictyostelium discoideum. 8 samples. Type: Other.
SCOPE-C Reveals the Key Role of Long-Range Loop Extrusion in Dynamic Enhancer Networks for Robust Gene Activation in Human Fetal Cortical Neurogenesis
GEO Series GSE267089. Homo sapiens; Macaca mulatta; Mus musculus. 150 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.