Skip to main content
Powered by ShareScore

Find research datasets worth reusing

Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.

339

datasets available to search

ShareScore release 0.9.0

Reset

Dataset results

339 results for “Macroinvertebrates”

Learn how ShareScore rates datasets ↗
edi48/100

North Temperate Lakes LTER: Benthic Macroinvertebrates 1981 - current

Macroinvertebrates are collected from selected shoreline and deep water locations in three primary research lakes (Crystal, Sparkling, and Trout lakes) in the Trout Lake area using modified Hester-Dendy samplers. Samplers are placed at fyke net and gill net locations in August and retrieved 3-4 weeks later. Macroinvertebrates are preserved in ethanol. This dataset contains counts of various groups of macroinvertebrates identified from specific samples. The majority of the identifications are at the genus level. The data table "Benthic Macroinvertebrate Codes" identifies the taxonomic group represented by each group code. Taxonomic references: Ecology and Classification of North American Freshwater Invertebrates, Edited by James H Thorp and Alan P Covich, Academic Press, Inc, 1991; Aquatic Insects of Wisconsin, William L Hilsenhoff, Natural History Museums Council, University of Wisconsin-Madison (1995). No lakes were sampled in 2020 or 2021. Sampling Frequency: annually. Number of sites: 17.

openCC (other)Apr 2024View details →
edi48/100

North Temperate Lakes LTER: Pelagic Macroinvertebrate Abundance 1983 - current

Pelagic macroinvertebrates are collected at night from the deepest location of each of the seven primary lakes in the Trout Lake area (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes and bog lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog]) by vertical tow with a 1-m diameter, 1-mm mesh net. On Trout Lake four additional sites are sampled, where depths are approximately 10m, 15m, 20m, and 25m. Sampling is once per year in the summer, with replicate tows collected on each lake. These tows target the large invertebrate planktivore component of the pelagic zooplankton community. This data set contains the number of individuals in each tow sample of four taxonomic groups: Chaoborus spp. (differentiating between larvae and pupae), Leptodora kindtii, Mysis relicta, and Bythotrephes longimanus. Trout Lake was the only lake sampled in 2020. Sampling Frequency: annually. Number of sites: 7

openCC (other)Mar 2024View details →
edi48/100

North Temperate Lakes LTER: Pelagic Macroinvertebrate Summary 1983 - current

This is a summary of dataset knb.lter.ntl.13. Derived data include the mean and standard deviation of the number of each species captured as well as the mean and standard deviation of the density of individuals on both an areal and volumetric basis. Five vertical tows are collected after dark at the deepest point of each of the seven primary lakes in the Trout Lake area (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes and bog lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog]) using a 1-m diameter, 1-mm mesh net. On Trout Lake four additional sites are sampled, where depths are approximately at 10 m, 15 m, 20 m, and 25 m, with three tows taken at each site. Samples are preserved, and later counted in their entirety for Chaoborus spp., Leptodora kindtii, Mysis relicta, and Bythotrephes longimanus. Sampling Frequency: annually. Number of sites: 7

openCC (other)Mar 2024View details →
edi48/100

Benthic macroinvertebrate, water temperature, and stream environmental data for Green Lakes Valley, 2021.

This dataset contains stream benthic macroinvertebrate community structure data from nine sites in the Green Lakes Valley ranging from below treeline near Albion Camp to the outflow of the Arikaree Glacier, all sampled in summer of 2021. The dataset also contains files with stream environmental data related to substrate stability, periphyton chlorophyll a concentrations, and water temperatures.

openCC (other)Dec 2022View details →
edi44/100

Southwest United States Wetland Water Quality and Macroinvertebrate Data 2018-2022

Water quality and macroinvertebrate data were collected between 2018 and 2020 from 14 different wetland and riparian sites spanning across West Texas, New Mexico, and Arizona. Water quality data such as Cl, SO4, and conductivity were collected as well as nutrients such as NO3, PO4, and Total Dissolved Nitrogen. Macroinvertebrate data were collected from all sites during the summer months (June, July, and August).

openCC (other)Feb 2022View details →
edi44/100

Spatiotemporal Assessment and Composition of Benthic Macroinvertebrate Communities in the Bermejo River Basin in the Ecuadorian Amazonia

The information includes biotic and ecological index data of benthic macroinvertebrates collected in the Ecuadorian Amazon Region. The biotic indexes are taxonomic abundance, richness, evenness, diversity, and dominance. The ecological indexes refer to the ecological water quality as determined by pollution-tolerant macroinvertebrates. The datasets also include physicochemical parameters for water quality determination. The dataset has been completed,; however, it may be updated if new information is generated.

openCC0Feb 2024View details →
edi44/100

North Temperate Lakes LTER: Benthic Macroinvertebrates 1981 - current (Reformatted to the ecocomDP Design Pattern)

This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/11/35. The abstract below was extracted from the Level 0 data package and is included for context: Macroinvertebrates are collected from selected shoreline and deep water locations in the seven primary lakes (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes, and unnamed lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog]) in the Trout Lake area using modified Hester-Dendy samplers. Samplers are placed at fyke net and gill net locations in August and retrieved 3-4 weeks later. Macroinvertebrates are preserved in ethanol. This dataset contains counts of various groups of macroinvertebrates identified from specific samples. The majority of the identifications are at the genus level. The data table "Benthic Macroinvertebrate Codes" identifies the taxonomic group represented by each group code. Taxonomic references: Ecology and Classification of North American Freshwater Invertebrates, Edited by James H Thorp and Alan P Covich, Academic Press, Inc, 1991; Aquatic Insects of Wisconsin, William L Hilsenhoff, Natural History Museums Council, University of Wisconsin-Madison (1995). Sampling Frequency: annually Number of sites: 7

openCC (other)Jul 2021View details →
edi44/100

North Temperate Lakes LTER: Pelagic Macroinvertebrate Summary 1983 - current (Reformatted to a Darwin Core Archive)

This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/284/3, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/14/32. The abstract below was extracted from the Level 0 data package and is included for context: This is a summary of dataset NTL 13. Derived data include the mean and standard deviation of the number of each species captured as well as the mean and standard deviation of the density of individuals on both an areal and volumetric basis. Five vertical tows are done at the deepest point of each of the seven primary lakes in the Trout Lake area (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes and bog lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog]) using a 1-mm mesh net with a 1-m wide mouth. On Trout Lake four additional sites are sampled, where depths are approximately at 10 m, 15 m, 20 m, and 25 m respectively, with three tows done at each site. Trout Lake was the only lake sampled in 2020. All samples are taken in darkness. Samples are preserved and counted, yielding numbers caught. These night tows target the large invertebrate planktivore component of the pelagic zooplankton community. Sampling Frequency: annually Number of sites: 11

openCC0Jul 2021View details →
edi44/100

North Temperate Lakes LTER Pelagic Macroinvertebrate Abundance 1983 - current (Reformatted to a Darwin Core Archive)

This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/285/3, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-ntl/13/32. The abstract below was extracted from the Level 0 data package and is included for context: Five vertical tows are done at the deepest point of each of the seven primary lakes in the Trout Lake area (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes and bog lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog]) using a 1-mm mesh net with a 1-m wide mouth. On Trout Lake four additional sites are sampled, where depths are approximately at 10 m, 15 m, 20 m, and 25 m respectively, with three tows done at each site. Trout Lake was the only lake sampled in 2020. All samples are taken in darkness. Samples are preserved and counted, yielding numbers caught. These night tows target the large invertebrate planktivore component of the pelagic zooplankton community. Sampling Frequency: annually Number of sites: 11

openCC0Jul 2021View details →
edi44/100

Macroinvertebrate species list of the Andrews Experimental Forest, 1992

Total taxa richness, proportion of Ephemeroptera, Plecoptera, and Trichoptera, Shannon diversity, alpha diversity, proportion represented by the most dominant taxon, and total abundance of individuals where macroinvertebrate assemblage measures used to evaluate the effects of sampling replication and distribution in two sites (lookout and Mack Creeks) in the HJ Andrews Experimental Forest. These collections were part of a larger study that sampled 16 western Oregon streams.

openCustomJan 2014View details →
edi44/100

Community structure of aquatic vertebrates and macroinvertebrates in relation to hydrologic variables in the Shark River Slough, Everglades National Park, Florida USA: Ongoing since 2012

The purpose of this project is to characterize the community structure of aquatic fauna (macroinvertebrates and fishes) and floating mats (including periphyton) across the heterogenous landscape of the NE Shark River Slough in Everglades NP. The community structure (abundance, biomass, and species composition) of floating mat, emergent vascular plants, fishes, and macroinvertebrates, and the spatial distribution of the latter in relation to hydrology, are among the key performance measures targeted for monitoring. The aim of our study is to provide a baseline characterization of these parameters so that the impact of future management activities (e.g., Modified Water Deliveries and Comprehensive Everglades Restoration Plan) can be assessed. The study area is sampled during the late wet season (September through November) to capture data when all sites are innundated with water and aquatic animal standing stocks are typically at their maximum. We document landscape-scale patterns in the NE Shark River Slough from this comprehensive sampling.

openCustomDec 2021View details →
zenodo40/100

Figure 2 in Influence of riparian quality on macroinvertebrate assemblages in subtropical mountain streams

Figure 2. Redundancy analysis (RDA) of macroinvertebrate density in sites of good (white dots), poor (grey dots) and bad (black dots) riparian quality according with the QBRy index. References: DO = dissolved oxygen; Bh = bank-full height; DW = dry channel width; Temp = water temperature; Cond = conductivity; FPOM = fine particulate organic matter.

opencc-by-4.0Feb 2014View details →
dryad40/100

Climate-associated variation in the drivers of benthic macroinvertebrate species-area relationships across shallow freshwater lakes

<p><span>The island species-area relationship (ISAR) describes how species richness increases with increasing area of a given island or island-like habitat, such as freshwater lakes. </span><span>While the ISAR is one of the most common phenomena observed in ecology, there is variation in both the form of the relationship and its underlying mechanisms.</span></p> <p><span>We compiled a global dataset of benthic macroinvertebrates from 524 shallow freshwater lakes, ranging from 1 to 293300 ha in area. We used individual-based rarefaction to determine the degree to which ISAR was influenced by mechanisms other than passive sampling (larger islands passively sample more individuals from the regional pool and, therefore, have more species than smaller islands), which would bias results away from expected relationships between rarefied species richness (and other measures that capture relative abundances) and lake area. We also examined how climate may alter the shape of the ISARs. </span></p> <p><span>We found that both rarefied species richness (the number of species standardized by area or number of individuals) and a measure of evenness emphasizing common species exhibit non-significant relationships with lake area, suggesting that the expected ISARs in these lakes most likely result from passive sampling. </span><span>While there was considerable variation among ISARs across the investigated lakes, we found an overall positive rarefied ISAR for lakes in warm (i.e., tropical/subtropical) regions (n = 195), and in contrast, an overall negative rarefied ISAR in cool (i.e., north temperate) lakes (n = 329). This suggested that mechanisms beyond passive sampling (e.g., colonization-extinction dynamics and/or heterogeneity) were more likely to operate in warm lakes. One possible reason for this difference is that the area-dependent intensity of fish predation, which can lead to flatter ISARs, is weaker in warmer relative to cooler lakes.</span></p> <p><span>Our study illustrates the importance of understanding both the pattern and potential processes underlying the ISARs of freshwater lakes in different climatic regions. Further, it provides a baseline for understanding how further changes to the ecosystem (i.e., in lake area or climate) might influence biodiversity patterns. </span></p>

opencc-zeroOct 2023View details →
zenodo40/100

Supplementary data for article "Small hydropower – small ecological footprint? A multi-annual environmental impact analysis using aquatic macroinvertebrates as bioindicators. Part 2: effects on functional diversity" by Scotti A., et al.

<p>Supplementary data for article &quot;Small hydropower &ndash; small ecological footprint? A multi-annual environmental impact analysis using aquatic macroinvertebrates as bioindicators. Part 2: effects on functional diversity&quot; by Scotti A., et al.:</p> <p><br> - Trait-based distances calculated for each pair of taxa;</p> <p>- CWM, CWM(LN) values, and their difference (CWMDIFF)</p> <p>Refer to the published articles for further details.</p>

opencc-by-4.0Mar 2022View details →
dryad40/100

Functional diversity of macroinvertebrates as a tool to evaluate wetland restoration

<p><span><span><span>Ecological restoration of aquatic ecosystems has become widespread in recent decades. Whereas the recovery of biodiversity in restored wetlands has been studied from a taxonomic perspective, our knowledge of how functional biodiversity recovers remains poorly understood. </span></span></span></p> <p><span><span>We studied the functional diversity of macroinvertebrate communities in 32 Mediterranean temporary ponds six to seven years after their creation during a restoration in South-West Spain, and compared them with 10 natural reference sites during two consecutive hydroperiods. We compared alpha functional diversity indices, and the individual contributions of new ponds and reference sites to the regional functional beta diversity, as well as to its turnover and nestedness components. We also investigated the influence of environmental and spatial variables on the dissimilarities of functional beta diversity and its components between new ponds and reference sites. </span></span></p> <p><span><span>Alpha functional diversity in new ponds was lower than in reference sites. Although the contribution of new ponds to the regional functional beta diversity was similar to that of reference sites, the latter contributed more to functional turnover, while new ponds contributed more to functional nestedness. </span></span></p> <p><span><span>Dispersal limitation coupled with environmental filtering structured the functional variation in communities between new ponds and reference sites, but their relative importance differed between beta components. New ponds can hold species with unique functional compositions, but their contribution to the regional functional beta diversity was mostly due to trait losses with respect to reference sites. </span></span></p> <p><span><span><b><i>Synthesis and applications</i></b>. Considering different aspects of functional diversity of invertebrate communities can help elucidate the processes and mechanisms through which ecosystems recover following restoration. We encourage the use of trait-based approaches to identify trends in processes and patterns that can guide future wetland restoration projects.</span></span></p>

opencc-zeroJun 2022View details →
dryad40/100

Quantifying the ecological impacts of alien aquatic macrophytes: A global meta‐analysis of effects on fish, macroinvertebrate and macrophyte assemblages

<p>Biological invasions constitute a pervasive and growing threat to the biodiversity and functioning of freshwater ecosystems. Macrophytes are key primary producers and ecosystem engineers in freshwaters, meaning that alien macrophyte invasions have the capacity to alter the structure and function of recipient aquatic ecosystems profoundly. Although prevailing wisdom holds that alien macrophyte invasions tend to compromise freshwater ecosystem structure and function, the ecological impacts of alien macrophyte invasion have not been quantitatively reviewed to date.</p> <p>Here we present a global meta-analysis of 202 cases from 53 research articles, exploring the impacts of alien macrophyte invasion on the abundance and diversity of three ubiquitous and ecologically important focal groups, which together comprise the bulk of non-microbial freshwater biodiversity: resident macrophytes, macroinvertebrates and fish. Our synthesis includes data from all continents except Antarctica and Asia, covering 25 alien macrophyte species, but reveals considerable taxonomic and geographical biases in knowledge.</p> <p>Meta-analysis results reveal that invasion by alien macrophytes has an overall negative impact on taxonomic diversity of the three focal groups, but no consistent effect on abundance. At a finer resolution, we detect a strong negative effect of alien macrophyte invasion on resident macrophyte abundance and diversity, and a significant but smaller positive effect of submerged alien macrophyte invasion on macroinvertebrates. Effects on fish appear inconsistent.</p> <p>Our findings emphasise the importance of context- and taxon-specific ecological research in informing appropriate and proportionate management of alien macrophyte invasions, since alien macrophyte impacts are not consistently negative. We also identify significant geographical and taxonomic limitations in existing studies, quantitative data being lacking for many alien taxa.</p>

opencc-zeroAug 2022View details →
dryad40/100

Diversity and composition of macroinvertebrate communities in a rare inland salt marsh

<p>Inland salt marshes are rare habitats in the Great Lakes region of North America, formed on salt deposits from the Silurian period. These patchy habitats are abiotically stressful for the freshwater invertebrates that live there, and provide an opportunity to study the relationship between stress and diversity. We used morphological and COI metabarcoding data to assess changes in diversity and composition across both space (a transect from the salt seep to an adjacent freshwater area) and time (three sampling seasons). Richness was significantly lower at the seep site with both datatypes, while metabarcoding data additionally showed reduced richness at the freshwater transect end, consistent with a pattern where intermediate levels of stress show higher diversity. We found complementary, rather than redundant, patterns of community composition using the two datatypes: not all taxa were equally sequenced with the metabarcoding protocol. We identified taxa that are abundant at the salt seep of the marsh, including biting midges (<i>Culicoides</i>) and ostracods (<i>Heterocypris</i>). We conclude that (as found in other studies) molecular and morphological work should be used in tandem to identify the biodiversity in this rare habitat. Additionally, salinity may be a driver of community membership in this system, though further ecological research is needed to rule out alternate hypotheses.</p>

opencc-zeroOct 2022View details →
dryad40/100

Climate warming shifts riverine macroinvertebrate communities to be more sensitive to chemical pollutants

<p>Freshwaters are highly threatened ecosystems that are vulnerable to chemical pollution and climate change. Freshwater taxa vary in their sensitivity to chemicals and changes in species composition can potentially affect the sensitivity of assemblages to chemical exposure. Here we explore the potential consequences of future climate change on the composition and sensitivity of freshwater macroinvertebrate assemblages to chemical stressors using the UK as a case study.</p> <p>Macroinvertebrate assemblages under end of century (2080-2100) and baseline (1980-2000) climate conditions were predicted for 608 UK sites for four climate scenarios corresponding to mean temperature changes of 1.28°C to 3.78°C. Freshwater macroinvertebrate toxicity data were collated for 19 chemicals and the hierarchical Species Sensitivity Distribution (hSSD) model was used to predict the sensitivity of untested taxa using relatedness within a Bayesian approach. All four future climate scenarios resulted in shifts in assemblage composition, with increases in the prevalence of molluscan, crustacean and annelid species, and towards increasing insect taxa of Odonata, Chironomidae, and Baetidae species. In contrast decreases in were projected for Plecoptera, Ephemeroptera (except for Baetidae) and Coleoptera species.</p> <p>Shifts in taxonomic composition were associated with changes in the percentage of species at risk from chemical exposure. For the 3.78°C climate scenario, 76% of all assemblages became more sensitive to chemicals and for 18 of the 19 chemicals, the percentage of species at risk increased. Climate warming-induced increases in sensitivity were greatest for assemblages exposed to metals and were dependent on baseline assemblage composition, which varied spatially.</p> <p>Climate warming is predicted to result in changes in the use, environmental exposure and toxicity of chemicals. Here we show that, even in the absence of these climate-chemical interactions, shifts in species composition due to climate warming will increase chemical risk and that the impact of chemical pollution on freshwater macroinvertebrate biodiversity may double or quadruple by the end of the 21st century.</p>

opencc-zeroMay 2024View details →
zenodo40/100

Fig. 13 in On The Study Of Fauna (Macroinvertebrates, Fish, Amphibians, Reptiles, Birds And Mammals) Of The Lower Course Of Shokhdara River Valley In Pamir, Mountain Bodakhshan, Tajikistan

Fig. 13. Total avifauna list versa the actually registered species; note: some species may be included in more than 1 type of occurrence.

opencc-by-4.0Jun 2024View details →
zenodo40/100

Fig. 10 in On The Study Of Fauna (Macroinvertebrates, Fish, Amphibians, Reptiles, Birds And Mammals) Of The Lower Course Of Shokhdara River Valley In Pamir, Mountain Bodakhshan, Tajikistan

Fig. 10. Himalayan agamas spotted along the rocks and mountain slopes along the course of Shokhdara River.

opencc-by-4.0Jun 2024View details →

ScienceDex guides

Understand access before you commit

These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record