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ShareScore release 0.9.0
Dataset results
35 results for “Microbial genomics”
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
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Data from: Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean
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Data from: Whole-genome duplication and host genotype affect rhizosphere microbial communities
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The data of Multi-task learning aids in assessing microbial genome quality
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Supporting data for the manuscript "Generation of lineage-resolved complete metagenome-assembled genomes in complex microbial communities"
<p>Supporting data for the manuscript titled "Generation of lineage-resolved complete metagenome-assembled genomes in complex microbial communities". The archive includes:</p> <ul> <li>metaFlye assmeblies and graphs for HiFi and CLR datasets.</li> <li>HiFi and CLR3 bins/MAGs produced using bin3C / DAS_Tool</li> <li>HiFi MAG taxonomy identifications and completeness info</li> <li>MAGPhase results on HiFi and CLR assmeblies </li> <li>Krona plots with sample composition analysis</li> <li>rRNA/tRNA annotations for the HiFi assembly</li> </ul>
Data from: Genome-wide association study of Arabidopsis thaliana leaf microbial community
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Data from: Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Genome-wide RELA binding sites in response to 5 microbial stimuli in Detroit562 cells [ChIP-seq]
GEO Series GSE91018. Homo sapiens. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Using Microbial Genomics to Elucidate the Source of Central-line Associated Bloodstream Infections
ClinicalTrials.gov study NCT02271243. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Variation of genome-wide NF-kappa B RELA binding sites in response to different microbial stimuli
GEO Series GSE91020. Homo sapiens. 33 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Development of a Fluorescence-Activated Cell Sorting Method Coupled with Whole Genome Amplification To Analyze Minority and Trace Dehalococcoides Genomes in Microbial Communities
GEO Series GSE54040. Dehalococcoides mccartyi VS; Dehalococcoides mccartyi BAV1; Dehalococcoides mccartyi CBDB1; Dehalococcoides mccartyi 195. 21 samples. Type: Genome variation profiling by array.
Design and testing of genome-proxy microarrays to profile marine microbial communities
GEO Series GSE9384. uncultured crenarchaeote 4B7; Prochlorococcus marinus subsp. pastoris str. CCMP1986; Prochlorococcus marinus str. MIT 9312; uncultured marine gamma proteobacterium EBAC31A08; uncultured marine bacterium EB0_41B09; uncultured proteobacterium 60D04; uncultured marine group II euryarchaeote 37F11; uncultured marine bacterium 440; uncultured marine bacterium 583; marine metagenome; Prochlorococcus marinus str. MIT 9313; Prochlorococcus marinus str. MIT 9515; uncultured marine bacterium 577; uncultured gamma proteobacterium eBACHOT4E07; uncultured marine alpha proteobacterium; uncultured Pseudomonadota bacterium; uncultured crenarchaeote 74A4; uncultured proteobacterium 65D09; uncultured marine group II euryarchaeote EF100_57A08; uncultured marine bacterium EB000_55B11. 28 samples. Type: Other.
Draft Genomes of Fungi Isolated from the International Space Station during the Microbial Tracking-2 Experiment
Draft genomes of fungi isolated from different surfaces on the International Space Station, as part of the Microbial Tracking 2 mission (ISS-MOP).
Microbial Observatory (ISS-MO): Draft Genome Sequence of two Aspergillus fumigatus Strains Isolated from the International Space Station
Aspergillus fumigatus is a saprophytic, filamentous fungus that is ubiquitous outdoors (soil, decaying vegetation) and indoors (hospitals, simulated closed habitats, etc.). A. fumigatus can adapt to various environmental conditions and form airborne conidia that are the inoculum for a variety of diseases (e.g. non- and invasive pulmonary infections, allergic bronchopulmonary aspergillosis, etc.) in immunocompromised hosts. In an on-going Microbial Observatory Experiments on the International Space Station (ISS) molecular phylogeny of several fungal isolates were characterized. Two strains, ISSF 21 and IF1SW-F4, were isolated from the HEPA filter and the surface of the Cupola of the ISS, respectively. Using primers targeting the internal transcribed spacers ITS1 and 2, both isolates were identified as A. fumigatus. The whole genome sequence analysis of ISSF 21 revealed increased number of single nucleotide polymorphisms (SNPs) when compared to the reference A. fumigatus 293. Knowing that A. fumigatus is an opportunistic pathogen and microgravity highly influences the antibiotic susceptibility and pathogenicity of microorganisms, we examined pathogenicity of both ISS isolates using the zebrafish larval model. The space station isolates (ISSF-021 and IF1SW-F4) were more virulent than two clinical strains (Af293 and CEA10) whose pathogenicity was highly characterized. Here the whole genome sequences of ISSF-021 strain are being deposited.
Time-series analyses of Monterey Bay coastal microbial picoplankton using a “genome proxy” microarray
GEO Series GSE21502. uncultured marine alpha proteobacterium; uncultured Pseudomonadota bacterium; uncultured crenarchaeote 74A4; uncultured marine bacterium EB000_55B11; uncultured marine bacterium 440; uncultured marine bacterium 583; marine metagenome; uncultured marine group II euryarchaeote EF100_57A08; uncultured crenarchaeote 4B7; Prochlorococcus marinus subsp. pastoris str. CCMP1986; uncultured marine gamma proteobacterium EBAC31A08; uncultured marine group II euryarchaeote 37F11; uncultured marine bacterium EB0_41B09; uncultured proteobacterium 60D04; unidentified; uncultured marine bacterium 577; uncultured gamma proteobacterium eBACHOT4E07; uncultured proteobacterium 65D09. 58 samples. Type: Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.