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101 results for “Microsatellite genotyping”
Raw data containing microsatellite genotypes and otolith microchemistry data for Lutjanus argentiventris individuals from Galapagos (Ecuador) and the Gulf of California (Mexico)
<p>The dataset contains the raw microsatellite genotypes and otolith microchemistry data for yellow snapper (Lutjanus argentiventris) individuals from Galapagos (Ecuador) and the Gulf of California (Mexico), described in the journal publication:</p> <p>Cavole LM, Munguia-Vega A, Miller JA, Salinas-de-Leon P, Marin Jarrin JR, Johnson AF, Laplane ER, Giron-Nava A, Aburto-Oropeza O (2023) Combining otolith chemistry and genetics to infer the population structure of yellow snapper <em>Lutjanus argentiventris. </em>Ecosphere.</p> <p> </p> <p> </p>
Microsatellite genotypes of Japanese abies species: Insights from population genetics and SDM
<p><span>Range shifts during the Pleistocene shaped the unique phylogeographical structures of many species. Pleistocene range shifts gave currently allopatric species opportunities to occur in sympatry, likely resulting in ancient introgressions between related taxa. In our study, we investigate the range shifts and introgression patterns of three Japanese <em>Abies </em>species (<em>A. firma, A. homolepis, and A. veitchii</em>) by employing an extensive survey of 43 populations. This survey includes comprehensive analysis of both mitochondrial (mtDNA) and nuclear (18 microsatellites) genomes, in combination with species distribution modeling (SDM). It is important to note that these two types of markers provide distinct and complementary information, as they have different modes of inheritance and mutation rates. Bayesian clustering analysis indicates that the three species were clearly separated, with the exception of the <em>A. homolepis </em>var. <em>umbellata</em> population, which is considered a natural hybrid between <em>A. homolepis</em> and <em>A. firma</em>. However, mtDNA haplotypes of the four northern populations of <em>A. firma</em> were entirely replaced by two major haplotypes of <em>A. homolepis </em>and <em>A. veitchii.</em> The results of Neighbor-net, NewHybrids, STRUCTURE analyses, and SDM suggest that historical introgression between species occurred in each geographic region, with mtDNA capture being the likely mechanism. However, contrary to these findings, the ABC coalescent analysis did not support an ancient introgression. Therefore, further validation with genome-wide level data is needed to clarify this issue. Our conclusion is that climate-induced range shifts during the Pleistocene/Holocene likely played a crucial role in the observed patterns of introgression in these species.</span></p>
Genotype data of Philippine native pigs, Duroc, Landrace, Large White and Berkshire, using 20 ISAG-FAO recommended microsatellite markers
<p>Microsatellite genotyping is a cost-effective method for the genetic diversity analysis of under-studied populations, such as the Philippine native pigs. We genotyped <em>n</em> = 196 pigs representing 7 Philippine native pig populations (<em>n </em>= 20 to 27 for each population) and 4 commercial transboundary breeds (<em>n</em> = 9 to 11 for each population). Twenty microsatellite markers, recommended by the International Society of Animal Genetics (ISAG)-FAO, were used to generate the dataset for population analysis (S0005, S0155, S0026, S0355, Sw830, Sw2410, Swr1941, Sw632, Sw24, S0228, Sw936, S0097, Sw857, Sw122, Sw2406, IGF1, Sw240, S0090, S0226, Sw72). S0218 was used as a sex marker (data not shown). All loci, except Sw24, did not deviate from Hardy Weinberg equilibrium. Each marker showed an average <em>PIC </em>of 0.779. A total of 260 alleles of length 86 to 272 bp were obtained. Using this dataset, we determined population structure and conservation priorities in the Philippine native pigs. This dataset contains both the raw files (.fsa) and the processed file (.txt). This dataset can be used by colleagues to increase their research coverage and achieve multi-population and multi-country comparisons, especially among Asian indigenous pigs.</p>
Microsatellite genotypes of Cercidiphyllum japonicum seeds and identity numbers of the seed parents
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Multilocus microsatellite genotypes and population geographical coordinates in the southern Damselfly (Coenagrion mercuriale)
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Data from: CHIIMP: an automated high-throughput microsatellite genotyping approach reveals greater allelic diversity in wild chimpanzees
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Admixture and reproductive skew shape the conservation value of ex situ populations of the Critically Endangered eastern black rhino - microsatellite and mitochondrial genotype data
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Genotype data of Philippine native pigs, Duroc, Landrace, Large White and Berkshire, using 20 ISAG-FAO recommended microsatellite markers
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Microsatellite genotypes for adult and seedlings of the temperate seagrass (ribbon weed), Posidonia australis, from four meadows at Rottnest Island, Western Australia
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Asian elephant microsatellite genotypes: Nakai Plateau and Sepon mines region, Lao PDR
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Summary of the microsatellite genotyping analysis of 280 C. gariepinus samples originating from eight locations in the Congo basin using five microsatellite markers
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Microsatellite genotype data from: Male-biased dispersal in a fungus-gardening ant symbiosis (Matthews et al, Ecology and Evolution)
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Roe deer microsatellite genotype data
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Microsatellite loci genotypes dataset (N=121 unique individuals) from: Sex-mediated gene flow of grayfoot chacma baboons (Papio ursinus griseipes ) in a highly seasonal habitat of Gorongosa National Park, Mozambique
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Microsatellite genotypes and associated data for: The contribution of clonality to population genetic structure in the sea anemone Diadumene lineata
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Data from: Characterizing population structure and documenting rapid loss of genetic diversity in Chiricahua Leopard Frogs (Lithobates chiricahuensis) with high throughput microsatellite genotyping
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Data from: Bombus impatiens colony microsatellite genotype data for mating frequency analysis
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Microsatellites genotyping for common and lesser cuckoos
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Microsatellite genotypes for temporal monitoring of the Floreana Island Galapagos Giant Tortoise captive breeding program
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Microsatellite genotypes
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International Brain Laboratory public data
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OpenNeuro
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