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Dataset results
63 results for “New York City”
New York City Observational Study of Mpox Immunity
ClinicalTrials.gov study NCT05654883. IPD Sharing: YES. Countries: 1. Publications: 0.
Impact of Medicaid Health Home on Patients With Diabetes in New York City
ClinicalTrials.gov study NCT02713321. IPD Sharing: NO. Countries: 1. Publications: 0.
Data from: Insights into summertime surface ozone formation from diurnal variations in formaldehyde and nitrogen dioxide along a transect through New York City
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Variation in brown rat cranial shape shows directional selection over 120 years in New York City
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Resource selection by New York City deer reveals the effective interface between wildlife, zoonotic hazards, and humans
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Nitrogen and Carbon cycling data in 10 urban afforestation sites in New York City 2018
The data includes soil microbial processes of carbon (C) and N in 10 afforestation sites in New York City as part of the MillionTreesNYC initiative (MTNYC) of the New York City Department of Parks and Recreation. Long-term research plots were established between 2009-2011 in municipal parks: Alley Pond, Canarsie, Ft. Totten, Clearview, Conference House, Clove Lakes, Marine Park (3 sites), and Pelham Bay. Sites were planted with low (two tree species) and high diversity (six tree species) treatments. More detailed description of sites and MTNYC project is provided by Downey et al. (2021). In 2018, 1 m soil cores were collected from plots at each site and analyzed for microbial biomass C and N, basal respiration, potential net N mineralization and nitrification, denitrification potential, soil inorganic N, and total soil N. Laboratory methods followed those used by Raciti et al. (2011a,b), and Groffman et al. (1999).
New York City Dropout Data
<p>The above contains data for the study on spatial analysis of dropouts in New York City. </p>
Data from: Rapid, pervasive genetic differentiation of urban white-footed mouse (Peromyscus leucopus) populations in New York City
We investigated genetic diversity and structure of urban white-footed mouse, Peromyscus leucopus, populations in New York City (NYC) using variation at 18 microsatellite loci. White-footed mice are "urban adapters" that occur at higher population densities as habitat fragments are reduced in area, but have a limited ability to disperse through urbanized areas. We hypothesized that this combination of traits has produced substantial genetic structure but minimal loss of genetic variation over the last century in NYC. Allelic diversity and heterozygosity in fourteen NYC populations were high, and nearly all of our NYC study sites contained genetically distinct populations of white-footed mice as measured by pairwise FST, assignment tests, and Bayesian clustering analyses performed by Structure and BAPS. Analysis of molecular variance revealed that genetic differences between populations separated by a few km are more significant than differences between prehistorically isolated landmasses (i.e. Bronx, Queens, and Manhattan). Allele size permutation tests and lack of isolation-by-distance indicated that mutation and migration are less important than drift as explanations for structure in urban, fragmented P. leucopus populations. Peromyscus often exhibit little genetic structure over even regional scales, prompting us to conclude that urbanization is a particularly potent driver of genetic differentiation compared to natural fragmentation.
Data from: Urban landscape genetics: canopy cover predicts gene flow between white-footed mouse (Peromyscus leucopus) populations in New York City
In this study, I examine the influence of urban canopy cover on gene flow between 15 white-footed mouse (Peromyscus leucopus) populations in New York City. Nm calculated from F_ST and recent migration estimated in BayesAss+, but not historic migration estimated in Migrate-n, exhibited significant isolation-by-distance (IBD). Gene flow was also associated with "effective distances" between populations that were calculated based on percent canopy cover using two different approaches: 1) isolation-by-effective-distance (IED) that calculates the single best pathway to minimize passage through high-resistance (i.e. low canopy cover) areas, and 2) isolation-by-resistance (IBR), an implementation of circuit theory that identifies all low-resistance paths through the landscape. IBR, but not IED, models were still significantly associated with all three measures of gene flow after factoring out the influence of IBD using partial Mantel tests. In cases where both IBR and IED explained gene flow independently of IBD, an additional partial Mantel test indicated that the IBR models still explained gene flow after factoring out IED. The IBR models that explained the most variation in recent migration after factoring out IBD (r = 0.70 – 0.90) included landscape cells with at least 60-80% canopy cover as low resistance habitat. These results have implications for understanding the impacts of urbanization trends on native wildlife, as well as for urban reforestation efforts that aim to improve urban ecosystem processes.
Heavy migration traffic and bad weather are a dangerous combination: Bird collisions in New York City
<p>Bird-building collisions account for 365-988 million bird fatalities every year in the United States alone. Understanding conditions that heighten collision risk is critical to developing effective strategies for reducing this source of anthropogenic bird mortality. Meteorological factors and regional migration traffic may influence collision rates but also may be difficult to disentangle from other effects. We used 5 years of bird collision counts in New York City to examine the influence of nocturnal weather conditions and bird migration traffic rates on collisions with buildings during spring and fall. We found that seasonally unfavorable winds and conditions that impede visibility are important factors that influence rates of bird-building collisions during both seasons. Specifically, northerly and westerly winds and low visibility in the spring, and southerly and westerly winds and low cloud ceiling height in the fall are associated with higher collision risks. Generally, these weather variables associated most strongly with increased collisions when nocturnal bird migration traffic was high, with the exception of low visibility in spring, which was predicted to triple collision rates compared to high visibility, independent of bird migration traffic. Although legislation to turn off unnecessary nocturnal lighting for the entirety of the migration seasons may be an ultimate goal, a proximate goal invaluable for reducing collisions will be predicting which nights will be of highest risk and using this information to determine when mitigation efforts could be most effective.</p>
Practical Canopy for New York City - Data Layer and Summarized Results
<p><strong>Summary:</strong></p> <p>The files available here include a spatial data layer that represents the output of an analysis of opportunity for additional tree canopy in New York City (NYC) that considers factors that influence where trees can be planted and where canopy can grow, 'practical canopy,' as well as summaries of this data layer by NYC Borough, Community District, City Council District, and Neighborhood Tabulation Area. Links to a preprint and peer-reviewed paper describing the methods and context for this work are available below. The practical canopy layer is the result of a spatial model, and is thus an approximation based on available data and assumptions. See the associated materials for full discussion of limits and potential uses of this work.</p> <p>If you do not find what you are looking for here, contact Michael Treglia, Lead Scientist with The Nature Conservancy in New York, Cities Program, at michael.treglia@tnc.org.</p> <p> </p> <p><strong>Terms of Use</strong></p> <p>© The Nature Conservancy. This material is provided as-is, without warranty under a Creative Commons Attribution-NonCommercial-ShareAlike License as set forth in our Conservation Gateway Terms of Use (available at: <a href="http://conservationgateway.org/Pages/Terms-of-Use.aspx">http://conservationgateway.org/Pages/Terms-of-Use.aspx</a>)</p> <p>If using these data, please cite the both the <a href="https://www.frontiersin.org/articles/10.3389/frsc.2022.944823/full">peer-reviewed paper</a> and this set of data, based on the following recommended citations:</p> <p>Treglia, M. L., Piland, N. C., Leu, K., Van Slooten, A., & Maxwell, E. N. (2022). Understanding opportunities for urban forest expansion to inform goals: working toward a virtuous cycle in New York City. <em>Frontiers in Sustainable Cities</em>. 4:944823. doi: 10.3389/frsc.2022.944823</p> <p>Treglia, M. L., Piland, N. C., Leu, K., Van Slooten, A., & Maxwell, E. N. (2022). Practical Canopy for New York City—Data Layer and Summarized Results [Data set]. <em>Zenodo</em>. doi: 10.5281/zenodo.6547492</p> <p> </p> <p>The manuscript for this work is also available in a <a href="https://www.preprints.org/manuscript/202206.0106/v1">preprint</a>, with the following citation:</p> <p>Treglia, M. L., Piland, N. C., Leu, K., Van Slooten, A., & Maxwell, E. N. (2022). Understanding opportunities for urban forest expansion to inform goals: working toward a virtuous cycle in New York City. <em>Preprints</em>. 2022060106. doi: 10.20944/preprints202206.0106.v1</p> <p> </p> <p><strong>Contents</strong></p> <p><em><strong>nyc_practicalcanopy_datalayer.zip</strong></em> - Zipped folder with the practical canopy data layer that resulted from the work described in the associated preprint, as both GeoPackage (.gpkg) and Esri File Geodatabase (.gdb) files, with Data Dictionary files in .docx and .html formats. Both the .gpkg and .gdb files are zipped within the .zip file to save space, such that users may uncompress the format they prefer to use. The uncompressed .gdb file is nearly 3 gb; the uncompressed .gpkg file is about 10 gb.</p> <p><em><strong>nyc_practicalcanopy_summary_results.zip</strong></em> - Zipped folder summarized results of the practical canopy analysis by NYC Borough, Community District, City Council District, and Neighborhood Tabulation Area. Data are available as non-spatial .csv files and as both GeoPackage (.gpkg) and Esri File Geodatabase (.gdb) files; Data Dictionaries are included in both .docx and .html formats.</p>
Supplementary material 1 from: Ang Y, Rajaratnam G, Su KFY, Meier R (2017) Hidden in the urban parks of New York City: Themira lohmanus, a new species of Sepsidae described based on morphology, DNA sequences, mating behavior, and reproductive isolation (Sepsidae, Diptera). ZooKeys 698: 95-111. https://doi.org/10.3897/zookeys.698.13411
Aligned COI sequences for Themira putris, T. biloba, and Themira 'biloba-like' (i.e., T. lohmanus n. sp.) specimens : Data type: Fasta file
Figure 1 in Occupancy patterns of Megascops asio in urban parks of New York City and southern Westchester County, NY, USA
Figure 1. Location of parks surveyed for eastern screech owls in Westchester County and the New York City boroughs of Manhattan, Queens and Brooklyn, 2010.
Antepartum Study on Use of Interpersonal Psychotherapy at 3 New York City Site
ClinicalTrials.gov study NCT00251043. IPD Sharing: Not stated. Countries: 1. Publications: 5.
New York City (NYC) Health eHearts Pay for Quality Pilot
ClinicalTrials.gov study NCT00884013. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Medicinal Plant Use for Treating Inflammation Among Dominicans in New York City and the Dominican Republic
ClinicalTrials.gov study NCT00109980. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Implementation and Evaluation of Care Coordination in Linkage to Care for Hepatitis C Following Release From New York City Jails
ClinicalTrials.gov study NCT04036760. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Physical Activity and People Living With HIV in New York City
ClinicalTrials.gov study NCT07091253. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
New York City Mobile Interventional Stroke Team
ClinicalTrials.gov study NCT03048292. IPD Sharing: NO. Countries: 1. Publications: 7.
Muslim Americans Reaching for Health and Building Alliances (MARHABA): Patient Navigation Intervention to Increase Breast and Cervical Cancer Screening Among Muslim Women in New York City
ClinicalTrials.gov study NCT03081507. IPD Sharing: Not stated. Countries: 1. Publications: 1.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.