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Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean
<p>Data associated with the study "<em>Brilliantia kiribatiensis</em>, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean".</p> <p><strong>ITS.fasta, ITS_bmge.fasta, LSU.fasta, LSU_bmge.fasta, SSU.fasta, SSU_bmge.fasta: </strong>SSU rDNA, LSU rDNA and rDNA ITS sequences used in phylogenetic analyses. Sequences of Brilliantia kiribatiensis were added to updated phylogenetic datasets used previously (Leliaert et al. 2007a, Leliaert et al. 2009b), aligned in MAFFT v7.215 (Katoh and Standley 2013), and stripped of hypervariable sites in BMGE v1.1 (Criscuolo and Gribaldo 2010) by using the -h 0.4 -g 0.35 parameters. Alignments were visually checked and concatenated in Seaview v4.4.2.</p> <p><strong>concatenated_SSU_ITS_LSU.fasta</strong>: concatenated alignment with following partitions: SSU: 1-1797, ITS1+5.8S+ITS2: 1798-3335, LSU: 3336-3926.</p> <p><strong>Table_S1_sequence_sources.xls: </strong>GenBank accessions, sample isolate codes and sites of collection for sequences included in the concatenated phylogenetic data set.</p> <p><strong>Table S2. </strong>Percent cover of different algal groups in 1 m2 photoquadrats. Algal groups are identified to genus level for fleshy macroalgae or functional group for turf algae, branched red algae, crustose coralline algae, and cyanobacteria.</p> <p><strong>Table SX.</strong> Morphological measurements of <em>Brilliantia kiribatiensis</em>.</p>
Systematic revision of the Spotted and Northern Dusky Salamanders (Plethodontidae: Desmognathus conanti and D. fuscus), with six new species from the eastern United States
<p>Appendix S1 - Specimen, locality, and morphometric data for 674 individual salamanders analyzed in this study. We used the ‘geomorph’ package in R (Adams and Otárola-Castillo 2013) to extract 17 measurements at 0.01mm precision: SVL (snout-vent length), TL (tail length), AG (axilla-groin length), CW (chest width), FL (femur length), HL (humerus length), SG (snout-gular length), TW (tail width at rear of vent), TO (length of third toe), FI (length of third finger), HW (head width), ED (eye diameter), IN (internarial distance), ES (eye-snout distance), ON (orbito-narial distance), IO (inter-orbital distance), and IC (inter-canthal distance).</p>
2003 Prescribed Burn Effect on Chihuahuan Desert Grasses and Shrubs at the Sevilleta National Wildlife Refuge, New Mexico: Species Composition Study (2004-2018)
Disturbance from fire can affect the abundance and distribution of shrubs and grasses in arid ecosystems. In particular, fire may increase grass and forb production while hindering shrub encroachment. Therefore, prescribed fires are a common management tool for maintaining grassland habitats in the southwest. However, Bouteloua eriopoda (black grama), a dominant species in Chihuahuan Desert grassland, is highly susceptible to fire resulting in death followed by slow recovery rates. A prescribed fire on the Sevilleta National Wildlife refuge in central New Mexico in 2003 provided the opportunity to study the effects of infrequent fires on vegetation in this region. This study was conducted along a transition zone where creosote bushes (Larrea tridentata) are encroaching on a black grama grassland. Before and after the fire, above ground plant productivity and composition were monitored from 2003 to present. Following the prescribed fire, there were fewer individual grass clumps and less above ground grass cover in burned areas compared to unburned areas. This decrease in productivity was primarily from a loss of B. eriopoda. Specifically, B. eriopoda density and cover were significantly lower following the fire with a slow recovery rate in the five years following the fire. Other grasses showed no such adverse response to burning. Data were collected from 2004-2013 and 2018. Data were not collected for 2014-2017.
Figure 4 in New endemic species of freshwater crayfish Parastacus Huxley, 1879 (Crustacea: Decapoda: Parastacidae) from the Atlantic forest in southern Brazil
Figure 4. Parastacus pilicarpus sp. nov. A, habitus dorsal view (holotype); B, cephalon dorsal view (holotype); C, cephalon lateral view (holotype); D, female pleon, dorsal view (paratype 1); E, male first to third pleonal pleura (holotype); F, female first to third pleonal pleura (paratype 1); G, telson and uropods dorsal view (holotype). Scale bars: A, D, F – 1 cm; E - 5 mm; C, G – 3.33 mm; B – 2.5 mm.
Figure 8 in New endemic species of freshwater crayfish Parastacus Huxley, 1879 (Crustacea: Decapoda: Parastacidae) from the Atlantic forest in southern Brazil
Figure 8. Distribution of Parastacus buckupi sp. nov. (star) and P. pilicarpus sp. nov. (triangle) in the states of Rio Grande do Sul and Santa Catarina, southern Brazil.
Figure 7 in New endemic species of freshwater crayfish Parastacus Huxley, 1879 (Crustacea: Decapoda: Parastacidae) from the Atlantic forest in southern Brazil
Figure 7. Comparative board of the chelipeds of selected species of genus Parastacus Huxley, 1879 with pilous cutting edge of fingers. A – P. buckupi sp. nov. (holotype); B – P. pilicarpus sp. nov. (holotype); C – P. fluviatilis Ribeiro & Buckup in Ribeiro et al. (2016) (UFRGS 2704); D – P. pilimanus (von Martens, 1869) (UFRGS 2413, CL 38.74). Scale bars: 1 cm.
Figure 6 in New endemic species of freshwater crayfish Parastacus Huxley, 1879 (Crustacea: Decapoda: Parastacidae) from the Atlantic forest in southern Brazil
Figure 6. Parastacus pilicarpus sp. nov., habitat and living specimens. A, B, Typical habitat, a first order stream in the municipality of Morro Grande, state of Santa Catarina; C, living specimen. Photographs by Caio R. M. Feltrin. No available information of scale in photograph C.
Figure 1 in New endemic species of freshwater crayfish Parastacus Huxley, 1879 (Crustacea: Decapoda: Parastacidae) from the Atlantic forest in southern Brazil
Figure 1. Parastacus buckupi sp. nov. A, habitus dorsal view (holotype); B, cephalon dorsal view (holotype); C, cephalon lateral view (holotype); D, female pleon (paratype 4); E, male first to third pleonal pleura (holotype); F, female first to third pleonal pleura (paratype 4); G, tailfan dorsal view (holotype). Scale bars: A – 1 cm; B–D, G – 5 mm; E, F – 3.33mm.
Figs. 15-18. Cybaeodes avolensis, new species. 15. Left male palp, ventral view. 16. Same, retrolateral view. 17. Epigynum, ventral view. 18 in On The Relationships of the Spider Genus Cybaeodes (Araneae, Dionycha)
Figs. 15-18. Cybaeodes avolensis, new species. 15. Left male palp, ventral view. 16. Same, retrolateral view. 17. Epigynum, ventral view. 18. Same, dorsal view.
Figs. 1-7 in Two New Species Of The Genus Oedignatha Thorell (Araneae: Clubionidae) From Coastal Andhra Pradesh, India
Figs. 1-7. Oedignatha binoyii sp. novo 1. Dorsal view of female (legs omitted); 2. Epigyne; 3. Internal genitalia; 4. Right male palp - ventral view; 5. Right male palp - inner view; 6. Right male palp - outer view; 7. Right chelicera - ventral view
Figs. 19-22. 19, 20. Cybaeodes carusoi, new species. 21, 22. C. alicatai, new species. 19. Left male palp, ventral view. 20. Same, retrolateral view. 21. Epigynum, ventral view. 22 in On The Relationships of the Spider Genus Cybaeodes (Araneae, Dionycha)
Figs. 19-22. 19, 20. Cybaeodes carusoi, new species. 21, 22. C. alicatai, new species. 19. Left male palp, ventral view. 20. Same, retrolateral view. 21. Epigynum, ventral view. 22. Same, dorsal view.
Figures 9-15 in A new species of Malthonea Thomson, 1864 (Coleoptera, Cerambycidae, Lamiinae) from Ecuador
Figures 9-15. (9) Malthoneaminima Martins & Galileo, 1995, holotype male, dorsalview (scanningof the photographsubmitted topublication – formerpersonal collectionof Ubirajara R. Martins). (10) Prymnoptetyxglaucina Thomson, 1868, holotype, dorsalview. (11) syntypesof Malthonearuficornis Belon, 1903, dorsalview (by Jesus Santiago Moure); (12) Blabia aurescens Breuning, 1966, holotype, dorsalview (by Eugenio Nearns; alsoavailable at http://cerambycids.com/longicornid/ default.asp?a=home); (13‑15) holotypeof Ptericoptusguttatus Kirsch, 1889 (by Olaf Jaeger): (13) dorsalhabitus; (14) lateralhabitus; (15) labels.
Figures 1-10 in Revison of Alongatepyris (Hymenoptera: Bethylidae) with description of a new species from Colombia
Figures 1-10. (1-5) Alongatepyris platunissimus: (1) head and mesosoma̡ dorsal view; (2) head and mesosoma̡ lateral view; (3) mandible̡ frontal view; (4) fore wing̡ dorsal view; (5) apex of metasoma̡ ventral view; (6-10) A. ingens sp. nov.: (6) head and mesosoma̡ dorsal view; (7) head̡ lateral view; (8) mandible̡ frontal view; (9) mesopleuron̡ dorsal view; (10) fore wing̡ dorsal view. Scale bar = 250 µm.
Figure 2 in A new species of Novamundoniscus Schultz, 1995 (Isopoda, Oniscidea, Dubioniscidae) from the state of Tocantins, Brazil
Figure 2. Novamundoniscus adhara Campos-Filho & Cardoso sp. nov., (female paratype). (A) right mandible; (B) left mandible; (C) maxillula outer endite; (D) maxilla; (E) maxilliped
Figure 1 in A new species of Novamundoniscus Schultz, 1995 (Isopoda, Oniscidea, Dubioniscidae) from the state of Tocantins, Brazil
Figure 1. Novamundoniscus adhara Campos-Filho & Cardoso sp. nov., (female paratype). (A) habitus; (B) dorsal scale-seta; (C) cephalon, frontal view; (D) pleonites 4 and 5, and telson; (E) antennula; (F) antenna
Figs. 118–124 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 118–124. Trichorhina tropidocerata sp. nov., male: 118, pereopod VII; 119, pereopod I; 120, exopod of pleopod I; 121, endopod of pleopod I; 122, endopod of pleopod II; 123, exopod of pleopod II; 124, exopod of pleopod V. Scale bars: 0.1 mm
Figs. 101–107 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 101–107. Trichorhina sexdens sp. nov., male: 101, pereopod I; 102, pereopod VII; 103, exopod of pleopod I; 104, endopod of pleopod I; 105, endopod of pleopod II; 106, exopod of pleopod II; 107, exopod of pleopod V. Scale bars: Figs 101–107, 0.1 mm.
Figs. 95–100 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 95–100. Trichorhina sexdens sp. nov., male: 95, cephalothorax and four first pereonites, dorsal view; 96, cephalothorax, frontal view; 97, antenna; 98, left mandible; 99, exiteof maxillula; 100, maxilliped. Scale bars: Fig. 95, 1 mm; Fig. 96, 0.5 mm; Figs 97–100, 0.1 mm
Figs. 90–94 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 90–94. Trichorhina orensis sp. nov., male: 90, pereopod I; 91, pereopod VII; 92, endopod of pleopod I; 93, pleopod II; 94, exopod of pleopod V. Scale bars: Figs 90–94, 0.1 mm; arrowed details, 0.01 mm.
Figs. 79–89 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 79–89. Trichorhina orensis sp. nov. Female, habitus: 79, dorsal; 80, cephalothorax and two first pereonites, lateral view; 81, cephalothorax, frontal view. Male: 82, antenna; 83, fan-shaped scale-seta of pereonite; 84, nodulus lateralis; 85, antennula; 86, right mandible; 87, exite of maxillula; 88, maxilla; 89, maxilliped. Scale bars: Fig. 79, 1 mm; Figs 80–81, 0.5 mm; Figs 83–84, 0.01 mm; Figs 82, 85–89, 0.1 mm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.