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3,663 results for “Phylogenetic analysis”
Genetic data and underlying taxa and GenBank sources of diatoms used in phylogenetic analysis for the diatom genus Nupela
<p>Supplementary material for the manuscript: Kulikovskiy M., Maltsev Y., Glushchenko A., Gusev E., Kapustin D., Kuznetsova I., Kociolek J.P. Preliminary molecular phylogeny of the diatom genus <em>Nupela</em> with the description of a new species and consideration of the interrelationships of taxa in the suborder Neidiineae D.G. Mann sensu E.J. Cox. Fottea</p> <p>Molecular investigation of diatom genera <em>Nupela</em> and <em>Brachysira</em> is conducted using strains from Indonesia and Vietnam. New species from the genus <em>Nupela indonesica</em> sp. nov. is described using combined approach. <em>Nupela lesothensis</em> (Schoeman) Lange-Bertalot is investigated using molecular data too. Phylogenetic analysis shows that <em>Nupela</em> and <em>Brachysira</em> are not closest genera. Morphology of <em>Nupela</em> and it differences from <em>Brachysira</em> is discussed. The genus <em>Nupela</em> is differs from all other diatom taxa by having coalescent hymenes ouside of areolae but not inside. Facultative development of raphe between different <em>Nupela</em> species is discussed.<br> SUPPLEMENT S1. Taxa and DNA sequence data used in phylogenetic analysis.<br> SUPPLEMENT S2. Final alignment of 2-gene DNA sequence data used for phylogenetic analysis in FASTA format.<br> SUPPLEMENT S3. Maximum Likelihood tree of <em>Nupela</em> species (indicated in bold) constructed from a concatenated alignment of 163 partial rbcL and partial 18S rDNA sequences of 1806 characters. Values near the horizontal lines (slash) are bootstrap support from RAxML analyses (<50 are not shown). Species from the centric diatoms were used as an outgroup. Families indicated according COX (2015).</p>
Genbank accession numbers of sequences used in the phylogenetic analysis
<p><em>Phylogenetic analysis: </em>Sequences were assembled using Lasergene v15 (DNASTAR, Inc. Madison, USA), and combined with sequences obtained from Genebank</p>
FIGURES 68 73 in Systematic revision of Anopinella Powell (Lepidoptera: Tortricidae: Euliini) and phylogenetic analysis of the Apolychrosis group of genera
FIGURES 68 73. Adults of Anopinella. 68, A. mariana; 69, A. carabayana; 70, A. cafrosana; 71, A. porrasa; 72, A. styraxivora, 73, A. fana.
Fig. 4 in From a lost world: an integrative phylogenetic analysis of Ansonia Stoliczka, 1870 (Lissamphibia: Anura: Bufonidae), with the description of a new species
Fig. 4 First and second-best morphometric ratio for the separation of a Ansonia sp. Usun Apau and Ansonia platysoma, b Ansonia sp. Usun Apau and Ansonia minuta, and c Ansonia platysoma and Ansonia minuta
CLDF dataset derived from Kitchen et al.'s "Bayesian phylogenetic analysis of Semitic languages" from 2009
<p>Cite the source of the dataset as:</p> <blockquote> <p>Bayesian phylogenetic analysis of Semitic languages identifies an Early Bronze Age origin of Semitic in the Near East. Andrew Kitchen, Christopher Ehret, Shiferaw Assefa, Connie J. Mulligan. Proc. R. Soc. B 2009 -; DOI: 10.1098/rspb.2009.0408. Published 29 April 2009</p> </blockquote>
Figure 9 in Phylogenetic analysis of the subgenus Lampetis (Spinthoptera) (Coleoptera: Buprestidae) of North and Central America, and the West Indies
Figure 9. One of the two equally parsimonious cladograms of Lampetis (Spinthoptera) of North and Central America and the West Indies, and 11 species of different generic groups of the subtribe Dicercina (outgroups). Synapomorphies and homoplastic changes of nodes are listed in Table II. Asterisks indicate the nodes collapsed in the strict consensus cladogram.
Figure 10 in Phylogenetic analysis of the subgenus Lampetis (Spinthoptera) (Coleoptera: Buprestidae) of North and Central America, and the West Indies
Figure 10. Cladogram resulting from the bootstrap analysis of Lampetis (Spinthoptera) of North and Central America and the West Indies, and 11 species of different generic groups of the subtribe Dicercina (outgroups). Numbers are the percentages obtained.
Figures 1–8 in Phylogenetic analysis of the subgenus Lampetis (Spinthoptera) (Coleoptera: Buprestidae) of North and Central America, and the West Indies
Figures 1–8. Illustration of some characters and character states. (1, 2) Punctures on frons: (1) Lampetis (Spinthoptera) simplex (scarce); (2) L. tigrina (abundant). (3, 4) Punctures on base of mandibles: (3) L. aurata (scarce); (4) Lampetis (Lampetis) amaurotica (abundant). (5, 6) Prosternum with punctures confluent laterally: (5) Oedisterna bisulcata (scarce); (6) Perotis unicolor (abundant). (7, 8) Elytra with transversal depressions on basal surface: (7) L. auropunctata (scarce); (8) L. drummondi (abundant).
Figure 51 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 51. Arbitrarily selected tree to trace the character evolution within the cryptobran dorids. Numbers refer to characters listed in the text. Characters printed in bold and italic face presented at least one instance of reversal.
Figure 50 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 50. Majority rule (50%) consensus tree of the phylogenetic relationships of the cryptobranch dorids with the percentage level of consensus.
Figure 48 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 48. Morphology of the caecum. A, Doris verrucosa (CASIZ 082119); scale bar = 1 mm. B, Calycidoris guntheri (CASIZ 086915); scale bar = 1 mm.
Figure 49 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 49. Strict consensus tree of the phylogenetic relationships of the cryptobranch dorids with the Bremer support values in terms of steps.
Figure 47 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 47. SEM images of dorsal tubercles. A, Onchidoris bilamellata (CASIZ 070511); scale bar = 430 Mm. B, Actinocyclus verrucosus (CASIZ 099250), scale bar = 600 Mm. C, Discodoris boholiensis (CASIZ 083654); scale bar = 150 Mm. D, Diaulula sandiegensis (CASIZ 068277); scale bar = 250 Mm.
Figure 46 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 46. Conualevia marcusi (CASIZ 071531). A, general view of the anatomy; scale bar = 1 mm. B, reproductive system; scale bar = 1 mm. C, lateral view of the buccal bulb; scale bar = 0.5 mm. D, central nervous system; scale bar = 0.5 mm. E, ventral view of the mouth area; scale bar = 1 mm.
Figure 45 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 45. Conualevia marcusi (CASIZ 071531), SEM images of a rhinophore and the penis. A, rhinophore; scale bar = 150 Mm. B, penis; scale bar = 150 Mm.
Figure 43 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 43. Sebadoris nubilosa (CASIZ 071727). A, general view of the anatomy; scale bar = 1 mm. B, reproductive system; scale bar = 1 mm. C, detail of several reproductive organs; scale bar = 1 mm. D, central nervous system; scale bar = 1 mm. E, lateral view of the buccal bulb; scale bar = 1 mm. F, ventral view of the mouth area; scale bar = 1 mm.
Figure 44 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 44. Conualevia marcusi (CASIZ 071531), SEM images of the radula and dorsal tubercles. A, inner lateral teeth; scale bar = 15 Mm. B, mid-lateral teeth; scale bar = 25 Mm. C, outer lateral teeth; scale bar = 20 Mm. D, dorsal tubercles; scale bar = 150 Mm.
Figure 42 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 42. Sebadoris nubilosa (CASIZ 071727), SEM images of the radula, penis and dorsal papillae. A, inner lateral teeth; scale bar = 50 Mm. B, mid-lateral teeth; scale bar = 75 Mm. C, outer lateral teeth; scale bar = 43 Mm. D, penial lamellae; scale bar = 100 Mm. E, dorsal papillae; scale bar = 500 Mm.
Figure 41 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 41. Otinodoris sp. (CASIZ 073238), SEM images of the penial hooks and vagina. A, penial hooks; scale bar = 500 Mm. B, vaginal cuticular lining; scale bar = 100 Mm.
Figure 39 in A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia)
Figure 39. Otinodoris sp. (CASIZ 073238), SEM images of the radula and dorsal tubercles. A, inner lateral teeth; scale bar = 75 Mm. B, mid-lateral teeth; scale bar = 75 Mm. C, outer lateral teeth; scale bar = 43 Mm. D, dorsal tubercles; scale bar = 350 Mm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.