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185 results for “Program Analysis”
Attack time analysis in dynamic attack trees via integer linear programming
<p>Matlab code for the experiments of the paper "Attack time analysis in dynamic attack trees via integer linear programming" by Milan Lopuhaä-Zwakenberg & Mariëlle Stoelinga.</p> <p>The code can be accessed either via the virtual machine in Artifact_MILPforDATs_revised.zip, or through the code directly in Matlab_code.zip. The results are in Paper_results.zip.</p> <p>To run the code, installations of Matlab and Gurobi are required.</p>
The impact of the program for medical male circumcision on HIV in South Africa: analysis using three epidemiological models
<p class="Body"><b>Background</b>: South Africa began offering medical male circumcision (MMC) in 2010. We evaluated the current and future impact of this program to see if it is effective in preventing new HIV infections.</p> <p class="Body"><b>Methods</b>: The Thembisa, Goals and EMOD HIV transmission models were calibrated to South Africa's HIV epidemic, fitting to household survey data on HIV prevalence, risk behaviors, and proportions of men circumcised, and to programmatic data on intervention roll-out including program-reported MMCs over 2009-2017. We compared the actual program accomplishments through 2017 and program targets through 2021 with a counterfactual scenario of no MMC program.</p> <p class="Body"><strong>Results:</strong> The MMC program averted 71,000-83,000 new HIV infections from 2010 to 2017. The future benefit of the circumcision already conducted will grow to 496,000-518,000 infections (6-7% of all new infections) by 2030. If program targets are met by 2021 the benefits will increase to 723,000-760,000 infections averted by 2030. The cost would be $1,070-1,220 per infection averted relative to no MMC. The savings from averted treatment needs would become larger than the costs of the MMC program around 2034-2039. In the Thembisa model, when modelling South Africa's 9 provinces individually, the 9-provinces-aggregate results were similar to those of the single national model. Across provinces, projected long-term impacts were largest in Free State, KwaZulu-Natal and Mpumalanga (23-27% reduction over 2017-2030), reflecting these provinces' greater MMC scale-up.</p> <p class="Body"><b>Conclusions</b>: MMC has already had a modest impact on HIV incidence in South Africa and can substantially impact South Africa's HIV epidemic in the coming years.</p>
Data from: Genetic pedigree analysis of the pilot breeding program for the rediscovered Galapagos giant tortoise from Floreana island
An aim of many captive breeding programs is to increase population sizes for reintroduction and establishment of self-sustaining wild populations. Genetic analyses play a critical role in these programs: monitoring genetic variation, identifying the origin of individuals, and assigning parentage to track family sizes. Here we use genetic pedigree analyses to examine three seasons of a pilot breeding program for the Floreana island Galapagos giant tortoise, C. niger, that had been declared extinct for ~150 years until individuals with mixed ancestry were recently discovered. We determined that eight of nine founding individuals were assigned parentage to at least one of 130 offspring produced, though there was considerable reproductive skew. In addition, we observed that genetic diversity of the progeny was lower than that of the founders. Despite the observed reproductive skew, we did not see evidence for assortative mating based on relatedness, but there was a trend towards reduced fitness when more related individuals bred. Finally, we found that the majority of progeny had ancestry assigned to the Floreana species (mean±SE = 0.51±0.02), though individual estimates varied. The success of these pilot seasons bodes well for a larger breeding program to help restore the previously extinct tortoise from Floreana island. Future efforts should continue to monitor for reproductive skew and assortative mating in order to maintain allelic diversity. We would also recommend forming smaller breeding groups and rotating individuals among them to prevent long-term reproductive skew among pairs.
Dataset & analysis for: Lab Sustainability Programs LEAF and My Green Lab: impact, user experience & suitability
<p>Dataset and analysis. Lab Sustainability Programs LEAF and My Green Lab: impact, user experience & suitability</p>
Attack time analysis in dynamic attack trees via integer linear programming
<p>Code and data corresponding to the paper "Attack time analysis in dynamic attack trees via integer linear programming"</p>
Dataset and tool - A Static Analysis for Discovering Type-Related Coding Idioms in Python Programs
<p>The archive file contains the following materials:</p> <ul> <li>`repos.tar.gz`: dataset of the collected Python repositories</li> <li>`tool.tar.gz`: programs used in the case studies</li> </ul>
Anonymized data for paper "RepeatNPR: Improving Neural Program Repair using Program Dependence Analysis and Filter Mechanism" submitted to ICSE 2024
<p>The project includes the dataset and source code used in the submitted ICSE 2024 paper titled "RepeatNPR: Improving Neural Program Repair using Program Dependence Analysis and Filter Mechanism"</p>
Cost-Effectiveness Analysis of a Virtual Reality-Assisted Hypnotherapy Program on Quality of Life in Patients with Chronic Low Back Pain: a Multicenter, Randomized, Prospective, Comparative, Open-Labe
ClinicalTrials.gov study NCT06698354. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Artificial Intelligence Based Program to Classify Oral Cavity Findings Based on Clinical Image Analysis
ClinicalTrials.gov study NCT06325514. IPD Sharing: UNDECIDED. Countries: 1. Publications: 4.
A Systems Analysis and Improvement Approach for Optimizing HIV Service Delivery in Syringe Services Programs
ClinicalTrials.gov study NCT06025435. IPD Sharing: NO. Countries: 1. Publications: 11.
Analysis of the Effects of the Adana City Training and Research Hospital Obesity Center Training Program on Adult Obese Patients With Binge Eating Disorder. A Prospective, Quasi-experimental Study Wit
ClinicalTrials.gov study NCT04127136. IPD Sharing: NO. Countries: 1. Publications: 5.
Peau o le Vasa: Analysis of the Efficacy and Feasibility of the PILI Lifestyle Program (PLP) + Social Determinants of Health (SDOH) Intervention and Adaptation of SDOH Measures Pilot Study
ClinicalTrials.gov study NCT06471595. IPD Sharing: Not stated. Countries: 1. Publications: 34.
Analysis of the Impact on Surgical Residency Programs in Times of Pandemic in Argentina
ClinicalTrials.gov study NCT04703400. IPD Sharing: Not stated. Countries: 1. Publications: 10.
A Comparative Analysis on Physical Activity Performance and Motor Function of Affected Upper Extremity Before and After a CIMT Program in Young Children With Hemiparetic Cerebral Palsy
ClinicalTrials.gov study NCT03418519. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Data from: Impact of the Ebola outbreak on Trypanosoma brucei gambiense infection medical activities in coastal Guinea, 2014-2015: a retrospective analysis from the Guinean national Human African Trypanosomiasis control program
Open the record for dataset details and reuse information.
The impact of the program for medical male circumcision on HIV in South Africa: analysis using three epidemiological models
Open the record for dataset details and reuse information.
Data from: Genetic pedigree analysis of the pilot breeding program for the rediscovered Galapagos giant tortoise from Floreana island
Open the record for dataset details and reuse information.
Single-cell multiomics analysis reveals regulatory programs in clear cell renal cell carcinoma
<p>Here, we performed an integrative analysis of scRNA-seq and scATAC-seq data from four ccRCC patients and aimed to identify the key regulatory molecules that mediate tumor development and manipulate the function of immune cells.</p>
FIGURE 9 in An analysis of fossil identification guides to improve data reporting in citizen science programs
FIGURE 9. Regressions of accuracy data reported by participants organized by educational background. '8'and '9' represent the last year of middle school and the freshman year of high school, respectively. '13' represents a bachelor's degree in any subject, '14' represents a master's degree in any subject, and '15' represents a PhD or equivalent degree in any subject. Black dots indicate mean accuracy for an educational background, the solid curve indicates a logarithmic regression for that accuracy data, and dashed curves show the 2σ confidence interval. 9A: regression of data accuracy using Sdice; 9B: regression of data accuracy using Sbc.
FIGURE 6 in An analysis of fossil identification guides to improve data reporting in citizen science programs
FIGURE 6. Bar graph of similarity data for different guide formats. 6A: presence/absence data using Sdice; 6B: relative abundance data using Sbc. 'Experts' combines data from the authors, who each have substantial paleontology experience.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.