Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
57
datasets available to search
ShareScore release 0.9.0
Dataset results
57 results for “Quantitative proteomics”
Quantitative high sensitivity proteomics with the Orbitrap ASTRAL platform
Open the record for dataset details and reuse information.
Data from: Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics
The malaria mosquito, Anopheles stephensi, and other mosquitoes modulate their biology to match the time-of-day. In the present work, we used a non-hypothesis driven approach (untargeted proteomics) to identify proteins in mosquito tissue, and then quantified the relative abundance of the identified proteins from An. stephensi bodies. Using these quantified protein levels, we then analyzed the data for proteins that were only detectable at certain times-of-the day, highlighting the need to consider time-of-day in experimental design. Further, we extended our time-of-day analysis to look for proteins which cycle in a rhythmic 24-hour ("circadian") manner, identifying 31 rhythmic proteins. Finally, to maximize the utility of our data, we performed a proteogenomic analysis to improve the genome annotation of An. stephensi. We compare peptides that were detected using mass spectrometry but are 'missing' from the An. stephensi predicted proteome, to reference proteomes from 38 other primarily human disease vector species. We found 239 such peptide matches and reveal that genome annotation can be improved using proteogenomic analysis from taxonomically diverse reference proteomes. Examination of 'missing' peptides revealed reading frame errors, errors in gene-calling, overlapping gene models, and suspected gaps in the genome assembly.
Data from: A quantitative proteomic analysis of cofilin phosphorylation in myeloid cells and its modulation using the LIM kinase inhibitor Pyr1
Open the record for dataset details and reuse information.
Data from: Identification of glucose kinase dependent and independent pathways for carbon control of primary metabolism, development and antibiotic production in Streptomyces coelicolor by quantitative proteomics
Open the record for dataset details and reuse information.
Data from: Quantitative proteomic analysis reveals posttranslational responses to aneuploidy in yeast
Open the record for dataset details and reuse information.
Data from: iTRAQ-based quantitative proteomic analysis on S100 calcium binding protein A2 in metastasis of laryngeal cancer
Open the record for dataset details and reuse information.
Data from: Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics
Open the record for dataset details and reuse information.
Quantitative proteomic and single-nucleus transcriptomics map of the sinus node elucidates the foundation of cardiac pacemaking
GEO Series GSE130710. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Quantitative mass spectrometry-based proteomics reveals the dynamic protein landscape during initiation of human Th17 cell polarization
GEO Series GSE118974. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
ICAT quantitative proteomic analysis of Myc-induced apoptosis
GEO Series GSE3159. Rattus norvegicus. 3 samples. Type: Other.
Quantitative Proteomics Reveals a Unique Wiring of Signaling Pathways that Protects Human Regulatory T Cell Identity
GEO Series GSE90600. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Correlation Analysis of Expression Profile and Quantitative iTRAQ-LC-MS/MS Proteomics Reveals Resistance Mechanism Against TuMV in Chinese Cabbage (Brassica rapa ssp. pekinensis)
GEO Series GSE151932. Brassica rapa subsp. pekinensis. 6 samples. Type: Expression profiling by high throughput sequencing.
Identification of PKA-dependent signaling network using CRISPR-Cas9 coupled with quantitative transcriptomics, proteomics and phosphoproteomics
GEO Series GSE95008. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Quantitative Proteomic and Transcriptomic Analysis Reveals Post-Transcriptional Regulation of Mitochondrial Biogenesis during Erythropoiesis
GEO Series GSE86912. Mus musculus; Homo sapiens. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Quantitative proteomic characterization and comparison of T helper 17 and iTreg cells
GEO Series GSE104152. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Quantitative proteome dynamics across embryogenesis in a model chordate
GEO Series GSE237005. Ciona robusta. 16 samples. Type: Expression profiling by high throughput sequencing.
Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics
GEO Series GSE25443. Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821. 16 samples. Type: Expression profiling by array.
Characterization of functional reprogramming during osteoclast development using quantitative proteomics and mRNA profiling
GEO Series GSE87805. Mus musculus. 12 samples. Type: Expression profiling by array.
RNAseq and quantitative proteomic analysis of Dictyostelium knock-out cells lacking the core autophagy proteins ATG9 and/or ATG16
GEO Series GSE162070. Dictyostelium discoideum. 36 samples. Type: Expression profiling by high throughput sequencing.
Quantitative proteomic analysis reveals maturation as a mechanism underlying glucocorticoid resistance in B lineage ALL and JNK inhibitors as a re-sensitising therapy
GEO Series GSE63335. Homo sapiens. 5 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.