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35
datasets available to search
ShareScore release 0.9.0
Dataset results
35 results for “Read Mapping”
Data for "Bridging reading and mapping: The role of reading annotations in facilitatingfeedback while concept mapping"
<p>This data includes:</p> <ul> <li>Questionnaire for Problem formulation</li> <li>UTAUT questionnaire evaluating Concept&Go</li> <li>SmartPLS model files for the UTAUT evaluation</li> </ul>
Minified read mapping asignment dataset for use in Snakemake
<p>This is a minified version of the dataset used in the <a href="https://datacarpentry.org/wrangling-genomics/">Wranging Genomics Data Carpentries</a> lesson for use in the Galaxy Training Network materials on Snakemake and other workflow development.</p>
Hooded crow genome assembly (PacBio long reads + BioNano optical maps + DoveTail HiC maps)
Open the record for dataset details and reuse information.
Simulated read data analysed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph"
<p>Simulated read data analyzed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph".</p> <p><strong>1) Human sequence data</strong></p> <p><strong>HO_chr11_50bp_sliding_window*fq.gz:</strong><br> All possible 50 bp reads overlapping chromosome 11 SNPs in the Human Origins dataset. Files with the word "alternate" in their filename carry the alternate allele, otherwise, they carry the reference allele. Deamination has been added into these simulated reads using gargammel (Renaud 2016) based on empirically estimated post-mortem damage in a dataset of 102 ancient genomes (Allentoft et al., 2015).</p> <p><strong>2) microbial data</strong></p> <p><strong>simulation_*_s.fq.gz:</strong><br> Simulated microbial read data from a set of microbial reference genomes identified in the ancient Clovis genome (Rasmussen 2014), using gargammel.</p>
Data from: Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies
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Prospective Study to Assess Medical Performance of Optical Mapping and Long Read Sequencing in Detecting Numerical and Structural Chromosome Abnormalities
ClinicalTrials.gov study NCT05290051. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.
GEO Series GSE18156. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Protocol for Mapping Protein-DNA Interactions with Directed Methylation with Long-read Sequecing (DiMeLo-seq)
GEO Series GSE208125. Homo sapiens; Drosophila melanogaster. 4 samples. Type: Other.
Hierarchical Analysis of Multi-mapping RNA-Seq Reads Improves the Accuracy of Allele-specific Expression
GEO Series GSE101815. Mus musculus. 96 samples. Type: Expression profiling by high throughput sequencing.
Multiple sequence alignments of Treponema pallidum complete genomes using three different references for mapping NGS reads
<p>Each file corresponds to the multiple sequence alignment of 75 complete Treponema pallidum genome sequences using the genomes of strains Nichols, SS14, and CDC-2 as references for mapping. This is supplemental data to the manuscript "Evolutionary processes in the emergence and recent spread of <em>Treponema pallidum</em>, the causative agent of syphilis" by Marta Pla-Díaz, Leonor Sánchez-Busó, Lorenzo Giacani, David Šmajs, Philipp P. Bosshard, Homayoun C. Bagheri, Verena J. Schuenemann, Kay Nieselt, Natasha Arora and Fernando González-Candelas</p>
Raw Reads and mapped reads, CP, Pac-Bio
<p>These files include the assembly itself (fasta format), as well as the Pac-Bio subreads, which have been mapped back to the assembly.</p>
Somatic reads mapped to HGAP4 CP genome (this study); and somatic CL reads mapped to CL genome (Arimoto et al, 2019)
<p>Somatic reads mapped to HGAP4 CP genome (this study); and somatic CL reads mapped to CL genome (Arimoto et al, 2019)</p>
Nodulated Pisum sativum RNAseq - mapped reads
<p>Nodulated Pisum sativum RNAseq - mapped reads, set 1</p>
Nodulated Pisum sativum RNAseq - mapped reads
<p>Nodulated Pisum sativum RNAseq - mapped reads, set 2</p>
RNA seq raw reads, cufflinks output, and deduplicated bam file, mapped to the Pac-Bio CP genome
<p>RNA seq raw reads, cufflinks output, and deduplicated bam file, mapped to the Pac-Bio CP genome</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.