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703 results for “Repetition”
Fig. 1 in Allopatric chromosomal variation in Nematocharax venustus Weitzman, Menezes & Britski, 1986 (Actinopterygii: Characiformes) based on mapping of repetitive sequences
Fig. 1. Map of Brazil (a) and collection sites (b) of Nematocharax venustus along the Almada (Almada), Contas (Upper Contas, Gongogi 1, 2, and 3), and Jequitinhonha River basins (Jequitinhonha 1 and 2) in the states of Bahia and Minas Gerais.
Fig. 4 in Allopatric chromosomal variation in Nematocharax venustus Weitzman, Menezes & Britski, 1986 (Actinopterygii: Characiformes) based on mapping of repetitive sequences
Fig. 4. Chromosomes of distinct populations of Nematocharax venustus after silver nitrate staining (Ag-NORs), base-specific fluorochrome staining (CMA 3 /DA/DAPI) and FISH with 18S (magenta) and 5S rDNA probes (green). Bar = 5 µm. The FISH with ribosomal probes confirmed the The first pattern, shared by specimens from the Almada occurrence of a single NOR system in most populations. The River and some populations from the Contas (Gongogi 1) only exception refers to one sample in the Jequitinhonha River and Jequitinhonha River basins (Jequitinhonha 1), includes basin (named Jequitinhonha 2), which presented additional 18S rRNA genes at terminal region of short arms of a 18S rDNA sites on long arms in one homologous from pair 8 sm pair (equivalent to Ag-NORs) and 5S rRNA genes at and on short arms of a single chromosomes from pair 10. This interstitial region on short arms of two pairs (16 – sm, and procedure was also informative in revealing four distribution 21 – st). The population from Gongogi 3 differs from this patterns of 18S and 5S rDNA in N. venustus (Fig. 4). pattern by presenting heteromorphic 5S rDNA cistrons
Dataset for "Laser-Assisted Etching of EagleXG Glass by Irradiation at Low Pulse-Repetition Rate"
<div>This dataset contains the raw data at the basis of the graphs and pictures reported in the paper:</div> <div>"Laser-assisted etching of EagleXG glass by irradiation at low pulse-repetition rate"</div> <div>by Roberto Memeo, Mattia Bertaso, Roberto Osellame, Francesca Bragheri and Andrea Crespi.</div> <div> </div> <div>This paper is published as:</div> <div>Appl. Sci. 2022, 12(3), 948. https://doi.org/10.3390/app12030948</div> <div> </div> <div>Each folder refers to the corresponding picture in the published paper and contains the .pdf file of the picture itself and the .csv file of the raw data for the graphs, if present.</div>
Erosion Ageing of Polymeric Insulation Materials: Dielectric Barrier Discharges on Wet Surfaces under Repetitive Voltage Pulses - Dataset
<p>This data set is the basis for the following paper which will be presented at the VDE Hochspannungstechnik 2024 conference from November 11 to 13 in Berlin. The data set contains the following content:</p> <ul> <li>Microscopic images of surface erosion on aged PTFE, PVC & PA 6.6 test objects</li> <li>The experimental setup for the ageing of these polymers</li> <li>Profilometer measurements of the polymer surfaces at different ageing times</li> </ul> <p>For further details please read the text file within the attached archive.</p> <p> </p> <p> </p> <p> </p>
Text-fig. 12. "Repetitive" marks on humerus P12404 Předmostí 1928, root traces visible on the shaft, for the metrics of this bone see Table 12. in Consumption Of Canid Meat At The Gravettian Předmostí Site, The Czech Republic
Text-fig. 12. "Repetitive" marks on humerus P12404 Předmostí 1928, root traces visible on the shaft, for the metrics of this bone see Table 12.
Data and code for "Search Algorithm, Repetitive Information, and Sales on Online Platform"
<p>Data and code for "Search Algorithm, Repetitive Information, and Sales on Online Platform".</p> <p>The R code containsboth code for simulation and code for estimation.</p>
FIG. 2 in Structural and functional genes, and highly repetitive sequences commonly used in the phylogeny and species concept of the phylum Cyanobacteria
FIG. 2. — Phylogeny of common or less studied genetic markers. According to the literature review,less common studied genetic marker has been highlighted.
FIG. 1. — A in Structural and functional genes, and highly repetitive sequences commonly used in the phylogeny and species concept of the phylum Cyanobacteria
FIG. 1. — A summary of structural and functional genes, and highly repetitive sequences commonly used in the phylogeny of cyanobacteria.
Repetitive elements of Erebia and Carex and their genomic proportions
<p>Datasets of repetitive elements in the genomes of <em>Erebia </em>and <em>Carex</em>, detected and annotated using RepeatExplorer2 (Novák et al., 2010, 2020) using low-coverage (0.1X) short read sequencing data. Data from the article "Holocentric repeat landscapes: from microevolutionary patterns to macroevolutionary associations with karyotype evolution":</p> <p>Cornet, C., Mora, P., Augustijnen, H., Nguyen, P., Escudero, M., & Lucek, K. (2023). Holocentric repeat landscapes: From micro-evolutionary patterns to macro-evolutionary associations with karyotype evolution. Molecular Ecology, 00, 1–19. <a href="https://doi.org/10.1111/ mec.17100">https://doi.org/10.1111/ mec.17100</a></p> <p>47 <em>Erebia </em>and 14 <em>Carex </em>species were analysed in genus-level analyses ("Erebia" and "Carex" folders).<br> In addition, individuals of 4 <em>Erebia </em>species ("Erebia cassioides", "Erebia tyndarus", "Erebia nivalis" and "Erebia pronoe" folders) from different populations were analysed in species-level analyses. </p> <p>Subfolders "Individuals" and "Comparative" represent the two modes in which RepeatExplorer2 was run: the individual mode identifies repeats in each sample separately, and the comparative mode identifies repeats in all samples simultaneously, allowing comparisons between individuals and species. </p> <p>Files named "CLUSTER_TABLE..." are the raw output of RepeatExplorer2 and represent the overall number of reads in each cluster of repetitive element, and their annotation.<br> Files named "COMPARATIVE_ANALYSIS_COUNTS..." are the raw output of RepeatExplorer2 in comparative mode, representing the number of reads in each cluster for each sample included in the analysis. <br> Files named "Genome_proportion..." are the genomic proportion of each repeat annotation, calculated as the proportion of reads with the same annotation.</p> <p>Refer to Cornet et al. (2023) in Molecular Ecology for more details on how the data was generated, the downstream analyses and the sample names (see Tables S1, S2 and S3). </p> <p>References:</p> <p>Novák, P., Neumann, P., & Macas, J. (2010). Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinformatics, 11(1), 378. https://doi.org/10.1186/1471-2105-11-378</p> <p>Novák, P., Neumann, P., & Macas, J. (2020). Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2. Nature Protocols, 15(11), Article 11. https://doi.org/10.1038/s41596-020-0400-y</p>
Dataset supporting: Repetitive transcranial magnetic stimulation (rTMS) triggers dose-dependent homeostatic rewiring in recurrent neuronal networks
<p>This dataset supports the Figures in the preprint: 'Repetitive transcranial magnetic stimulation (rTMS) triggers dose-dependent homeostatic rewiring in recurrent neuronal networks' by Anil et. al., <a href="https://www.biorxiv.org/content/10.1101/2023.03.20.533396v1">2023</a>.</p> <p>The code used to genrate this data can be found on the github repository: <a href="https://github.com/swathianil">swathianil </a><a href="https://github.com/swathianil/homeostatic_structural_plasticity_rTMS"> /homeostatic_structural_plasticity_rTMS</a>.</p> <p>To interactively regenerate the figures, follow the Jupyter notebook, GraphPlotter, available in the repository.</p>
Dataset SeBluCo study: SARS-CoV-2-antibodies among German blood donors 2020 – 2022, a repetitive cross-sectional study
<p>The dataset is the result of a repetitive cross-sectional study in 28 regions in Germany on SARS-CoV-2 antibodies in residual samples of blood donors from April 2020 to April 2021, September 2021 and April/May 2022. These data were used to aide in monitoring the pandemic in Germany. Data were completely anonymised at the site of sample collection. Serological test results are accompanied by demographic data including sex, age and area of residence (assigned a level two Nomenclature des Unités Territoriales Statistiques (NUTS2)). </p><p>The file contains data (sheet "data") as well as the description of variable content and coding (sheet "variables").</p>
Data from: Repetitive DNA profiles reveal evidence of rapid genome evolution and reflect species boundaries in ground beetles
Open the record for dataset details and reuse information.
Data from: Optimizing exome captures in species with large genomes using species-specific repetitive DNA blocker
Open the record for dataset details and reuse information.
Social-like responses are inducible in the asocial and blind Mexican cavefish despite the continued exhibition of strong repetitive behavior
<p>Demo code and demo video files for the manuscript of "Social-like responses are inducible in the asocial and blind Mexican cavefish despite the continued exhibition of strong repetitive behavior." This zip file contains three folders, representing (1) ImageJ script for background subtraction; (2) python script to adjust swapped IDs in the result of idTracker analysis; and (3) MatLab script for detecting the social interactions</p>
Nanosecond Repetitively Pulsed Plasmas with MHz Bursts for CO2 Dissociation
<p>Data used to created the figures in our submission "Nanosecond Repetitively Pulsed Plasmas with MHz Bursts for CO2 Dissociation" to Journal of Applied Physics D.</p>
Comprehensive characterisation of the genomic insertion site of a transgene in highly repetitive, centromeric region of Anopheles mosquitoes
<p>The availability of the genomic sequence of the malaria mosquito <em>Anopheles</em> <em>gambiae</em> has sparked in recent years the development of transgenic technologies with the potential to be used as novel tools for vector control. These technologies rely on genome editing that confers features able to affect vector capacity. This can be achieved by either reducing the mosquito population or by making mosquitoes refractory to the parasite infection. Although sophisticated molecular techniques such as those based on AttB/AttP site-specific recombination and CRISPR/Cas9 systems can lead to the integration of transgenes in specific sites of the genome, methods that allow semi-random integration are still in use due to their high efficiency; PiggyBac transposon-mediated integrations fall in this category. Characterization of the insertion site of transgenes in transgenic strains generated via PiggyBac integration can be hampered when the transgene is inserted in regions of the genome rich in repetitive sequences. Here we describe a number of techniques that were used to identify the genomic location of the transgene in a repetitive region in the <em>Anopheles gambiae</em> strain Ag(PMB)1 which was initially reported on Chromosome 3R 36D. Whilst Inverse PCR used in previous analysis was unable to distinguish between multiple genomic locations as potential insertion sites of the transgene, here we demonstrate that the use of FISH identifies clearly the integration of the transgene in a poorly annotated centromeric region of Chromosome 2R 19D. This study emphasises the need for accuracy in sequencing data for the genome of organisms of medical importance such as <em>Anopheles </em>mosquitoes. An effort to further improve reference genomes is of paramount importance to support and facilitate vector control interventions based on genome editing.</p>
Repetitive DNA annotation of Cladosporium fulvum Race 5
<p>This dataset consists of repetitive DNA annotation of the genome of <em>Cladosporium fulvum i</em>solate Race 5 (GenBank GCA_020509005.2). Repeats were identified with two versions of RepeatModeler v1.0.11 and v2.0.2. The repeat libraries obtained by both versions are in distinct files: RM1_lib.fasta and RM2_lib.fasta for versions 1 and 2 of RepeatModeler, respectively. The repeat libraries were used to mask the genome of <em>C. fulvum</em> Race 5 using RepeatMasker v4.1.2-p1. The obtained locations of repeats are shown in the GFF files.</p> <p>This dataset is associated with the following publication: A chromosome-scale genome assembly of the tomato pathogen <em>Cladosporium fulvum</em> reveals a compartmentalized genome architecture and the presence of a dispensable chromosome. <em>Microbial Genomics</em>, 2022.</p>
Bichromatic wave groups with DIFFerent REPetition periods over a 1:100 sloping bed (DIFFREP-ICL).
<p><strong>DATASET DESCRIPTION</strong></p> <p>DIFFREP-ICL is the dataset that gathers the measurements described in <em>Padilla and Alsina, 2018</em>: <em>Long Wave Generation Induced by Differences in the Wave-Group Structure</em>.</p> <p>For wave cases from MR-01 to MR-10, the provided variables are:</p> <p><strong>i.</strong> Spatial domain measured from the wave paddle (<em>X</em>)</p> <p><strong>ii.</strong> Spatial domain measured from the shoreline at still water conditions (<em>x</em>)</p> <p><strong>iii.</strong> Water depth (<em>d</em>)</p> <p><strong>iv.</strong> Temporal domain (<em>time</em>)</p> <p><strong>v.</strong> Surface elevation series (<em>eta</em>) </p> <p><strong>vi.</strong> Run-up series measured according to the x-coordinate (<em>runup</em>) </p>
A method for correcting staggered pulse repetition time (PRT) and dual Pulse Repetition Frequency (PRF) processor errors
<p>A method for correcting dual-PRF and staggered-PRT induced radial velocity errors. This method is being developed by the authors at the University of Oklahoma and is considered to be a work in progress. v2 of the algorithm will be made available in the coming months (late 2019 or early 2020).</p>
Fig. 2 in Allopatric chromosomal variation in Nematocharax venustus Weitzman, Menezes & Britski, 1986 (Actinopterygii: Characiformes) based on mapping of repetitive sequences
Fig. 2. Representative karyotype of Nematocharax venustus. Bar = 5 µm.
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.