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6,410 results for “Results”
GWAS Summary Statistics from "Sex and statin-related genetic associations at the PCSK9 gene locus – results of genome-wide association meta-analysis"
<p>GWAMA summary statistics of PCSK9 levels stratified by sex and statin useage in Europeans.</p> <p>When using this data, please cite:</p> <p>Pott, J., Kheirkhah, A., Gadin, J.R. <em>et al.</em> Sex and statin-related genetic associations at the <em>PCSK9</em> gene locus: results of genome-wide association meta-analysis. <em>Biol Sex Differ</em> <strong>15</strong>, 26 (2024). https://doi.org/10.1186/s13293-024-00602-6</p> <p>All txt files contain the following columns:</p> <ul> <li>markername (unique SNP ID)</li> <li>chr</li> <li>bp_hg19 (base position according to hg19)</li> <li>EA (effect allele)</li> <li>OA (other allele)</li> <li>EAF (effect allele frequency)</li> <li>info (minimal info score across all used studies)</li> <li>nSamples (sample size per SNP)</li> <li>nStudies (in case of double-stratified data: number of studies; in case of single-stratified data: 2, as it is a meta-analysis of the two double-stratified data sets)</li> <li>beta (effect estimate)</li> <li>SE (standard error)</li> <li>pval (p-value)</li> <li>I2 (SNP heterogeneity across studies)</li> <li>invalidAssoc (TRUE/FALSE flag if this variant was excluded in our analysis)</li> <li>reason4exclusion (reason why this SNP was excluded)</li> <li>phenotype (phenotyp setting)</li> </ul>
Unified Human Gastrointestinal Proteome clustering results by DPCfam
<p>This dataset contains the result of clustering the Unified Human Gastrointestinal Proteome (UHGP) using the DPCfam algorithm. </p> <p>More details on the DPCfam clustering algorithm can be found in the original publication:</p> <p>Russo, Elena Tea, et al. "DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets." <em>PLOS Computational Biology</em> 18.10 (2022): e1010610. <a href="https://doi.org/10.1371/journal.pcbi.1010610">https://doi.org/10.1371/journal.pcbi.1010610</a></p> <p>All of the putative protein families obtained through DPCfam (including previous results) can be browsed online at our dedicated webserver: <a href="https://dpcfam.areasciencepark.it/uhgp">https://dpcfam.areasciencepark.it/uhgp</a></p> <p>The original protein dataset is version 1.0 of the UHGP-50 dataset, available for download from MGnify at <a href="https://www.ebi.ac.uk/metagenomics/.">https://www.ebi.ac.uk/metagenomics/</a>.</p> <p><strong>FILES DESCRIPTION:</strong></p> <p>Only MCs with seeds with 1) more than 50 elements and 2) average length larger than 50 aminoacids are reported.</p> <p><strong>metaclusters_xml.tar.gz:</strong></p> <ul> <li><strong>dpcfam_uhgp_metaclusters.xml</strong>: Metaclusters' seeds. Metaclusters entries include also some statistical information about each MC (such as size, average length, low complexity fraction, etc.) and Pfam comparison (Dominant Architecture).</li> <li><strong>dpcfam_metaclusters.xsd</strong>: XML schema file for the data. </li> <li><strong>MCxml_to_tables.awk:</strong> Awk script to convert from XML to tabular text files. Use through the parse.sh script.</li> <li><strong>parse.sh</strong>: XML parser. </li> <li><strong>README.md</strong></li> </ul> <p><strong>uhgp_xml.tar.gz: </strong></p> <ul> <li><strong>uhgp_seed_match.xml</strong>: XML file containing all of UHGP-50 proteins and its corresponding sequences, annotated with Pfam and DPCfam metacluster data. Annotations comprise the membership of a protein as a seed or matches found though the profile-hmms of the DPCfam-UHGP and the DPCfam-Uniref clusterings. </li> <li><strong>uhgp_matches.xsd</strong>: XML schema file for the data. </li> <li><strong>xml_to_list.awk:</strong> Awk script to convert from XML to tabular text files. Use through the parse.sh script.</li> <li><strong>xml_to_list_mcfiles.awk:</strong> Awk script to convert from XML to tabular text files (including individual files for metaclusters' seeds). Use through the parse.sh script.</li> <li><strong>parse.sh</strong>: XML parser. </li> <li><strong>README.md</strong></li> </ul> <p><strong>Metacluster Files:</strong></p> <ul> <li><strong>seeds.zip: </strong>Metaclusters' seed sequences. A fasta file for each metacluster before filtering.</li> <li><strong>filtered_seeds.zip: </strong>Metaclusters' seed sequences after clustering at 60 percent identity. </li> <li><strong>metaclusters_hmms.tar.gz: </strong>Metaclusters' profile-hmms. A ".hmm" file for each metacluser. </li> <li><strong>metaclusters_msas.tar.gz: </strong>Metaclusters' multiple sequence alignments, in fasta format. </li> </ul> <p><strong>uhgp_protein_mapping.txt:</strong></p> <ul> <li>Contains a mapping between the identifiers of versions 1.0 and 2.0.2 of UHGP. The first column corresponds to the ID in UHGP-50 1.0 (representatives for the clustering at 50% protein identity), the second column to the ID in version 2.0.2 and the third column to the ID of the representative of the protein for clustering at 100% sequence identity, for which the protein sequence can be found in UHGP-100. </li> </ul>
Inter-Chemical Correlation results for the study: NHANES20172018 (NHANES Survey 2017-2018)
Title: NHANES Survey 2017-2018 <br>Species: Homo sapiens <br>Number of samples: 8433 <br>Number of named analytes: 86 <br>Datasource url: https://wwwn.cdc.gov/nchs/nhanes/search/datapage.aspx?Component=Laboratory <br>
Inter-Chemical Correlation results for the study: ECHOAKA02 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 112 <br>Number of named analytes: 12 <br>Datasource url: https://dash.nichd.nih.gov/study/424675 <br>
Inter-Chemical Correlation results for the study: ECHOAHA02 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 91 <br>Number of named analytes: 11 <br>Datasource url: https://dash.nichd.nih.gov/study/424673 <br>
Inter-Chemical Correlation results for the study: ECHOAHA01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 538 <br>Number of named analytes: 173 <br>Datasource url: https://dash.nichd.nih.gov/study/424672 <br>
Inter-Chemical Correlation results for the study: ECHOAKA01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 243 <br>Number of named analytes: 53 <br>Datasource url: https://dash.nichd.nih.gov/study/424674 <br>
Inter-Chemical Correlation results for the study: ECHOAGA01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 1947 <br>Number of named analytes: 205 <br>Datasource url: https://dash.nichd.nih.gov/study/424671 <br>
Inter-Chemical Correlation results for the study: ECHOAFA02 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 788 <br>Number of named analytes: 168 <br>Datasource url: https://dash.nichd.nih.gov/study/424670 <br>
Inter-Chemical Correlation results for the study: ECHOAFA01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 1419 <br>Number of named analytes: 190 <br>Datasource url: https://dash.nichd.nih.gov/study/424669 <br>
Inter-Chemical Correlation results for the study: ECHOACA01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 360 <br>Number of named analytes: 12 <br>Datasource url: https://dash.nichd.nih.gov/study/424666 <br>
Inter-Chemical Correlation results for the study: ECHOABA05 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 237 <br>Number of named analytes: 46 <br>Datasource url: https://dash.nichd.nih.gov/study/424665 <br>
Inter-Chemical Correlation results for the study: ECHOAAR01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 948 <br>Number of named analytes: 42 <br>Datasource url: https://dash.nichd.nih.gov/study/424653 <br>
Inter-Chemical Correlation results for the study: ECHOAAV01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 1977 <br>Number of named analytes: 53 <br>Datasource url: https://dash.nichd.nih.gov/study/424657 <br>
Inter-Chemical Correlation results for the study: ECHOAAG01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 805 <br>Number of named analytes: 187 <br>Datasource url: https://dash.nichd.nih.gov/study/424649 <br>
Inter-Chemical Correlation results for the study: ECHOAAD01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 95 <br>Number of named analytes: 34 <br>Datasource url: https://dash.nichd.nih.gov/study/424646 <br>
Inter-Chemical Correlation results for the study: ECHOAAC01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 643 <br>Number of named analytes: 77 <br>Datasource url: https://dash.nichd.nih.gov/study/424645 <br>
Inter-Chemical Correlation results for the study: ECHOAAP01 (NA)
Title: cohort name is masked <br>Species: Homo sapiens <br>Number of samples: 1422 <br>Number of named analytes: 183 <br>Datasource url: https://dash.nichd.nih.gov/study/424652 <br>
Inter-Chemical Correlation results for the study: HHEARx2018-2512 (The Role of Environmental Endocrine Disruptors on the Health of Inner City Children)
Title: The Role of Environmental Endocrine Disruptors on the Health of Inner City Children <br>Species: Homo sapiens <br>Number of samples: 651 <br>Number of named analytes: 26 <br>Datasource url: https://hheardatacenter.mssm.edu/PublicFile/ViewPublicFile?projectid=62 <br>
Inter-Chemical Correlation results for the study: HHEARx2018-2120 (The impact of tobacco smoke exposure and environmental exposures on the pulmonary microbiome and outcomes of critically ill children)
Title: The impact of tobacco smoke exposure and environmental exposures on the pulmonary microbiome and outcomes of critically ill children <br>Species: Homo sapiens <br>Number of samples: 1090 <br>Number of named analytes: 12 <br>Datasource url: https://hheardatacenter.mssm.edu/PublicFile/ViewPublicFile?projectid=42 <br>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.