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412 results for “SCOPE”
HeLa "Kyoto" cells under the scope
<p><strong>Name</strong>: HeLa “Kyoto” cells under the scope</p> <p><strong>Microscope</strong>: Perkin Elmer Operetta microscope with a 20x N.A. 0.8 objective and an Andor Zyla 5.5 camera.</p> <p><strong>Microscopy data type</strong>: The time-lapse datasets were acquired every 15 minutes, for 60 hours. From the individual plan images (channels, time-points, field of view exported by the PerkinElmer software Harmony) multi-dimension images were generated using the <a href="https://github.com/BIOP/ijp-operetta-importer/releases/tag/Operetta_Importer-0.1.21">Operetta_Importer-0.1.21</a> with a downscaling of 4. </p> <p>Channel 1 : Low Contrast DPC (Digital Phase Contrast)</p> <p>Channel 2 : High Contrast DPC</p> <p>Channel 3 : Brightfield</p> <p>Channel 4 : EGFP-α-tubulin</p> <p>Channel 5 : mCherry-H2B</p> <p><strong>File format</strong>: .tif (16-bit)</p> <p><strong>Image size</strong>: 540x540 (Pixel size: 0.299 nm), 5c, 1z , 240t</p> <p> </p> <p><strong>Cell type</strong>: HeLa “Kyoto” cells, expressing EGFP-α-tubulin and mCherry-H2B ( <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3839080/">Schmitz <em>et al</em>, 2010</a> )</p> <p><strong>Protocol</strong>: Cells were resuspended in <strong>Imaging media</strong> and were seeded in a microscopy grade 96 wells plate ( <a href="https://catalyse-erm.epfl.ch/erd-client/app/secure/sourcesearch/results?p=1&channel=SpendDirectorCatalog">CellCarrier Ultra 96</a>, Perkin Elmer). The day after seeding, and for 60 hours, images were acquired in 3 wells, in 25 different fields of view, every 15 minutes.</p> <p><strong>Imaging media</strong>: DMEM red-phenol-free media (FluoroBrite™ DMEM, Gibco) complemented with Fetal Calf Serum and Glutamax.</p> <p> </p> <p><strong>NOTE: </strong>This dataset was used to automatically generate label images in the following Zenodo entry: <strong> <a href="https://doi.org/10.5281/zenodo.6140064">https://doi.org/10.5281/zenodo.6140064</a></strong></p> <p><strong>NOTE: </strong>This dataset was used to train the cellpose models in the following Zenodo entry:<strong> <a href="https://doi.org/10.5281/zenodo.6140111">https://doi.org/10.5281/zenodo.6140111</a></strong></p>
Social Innovations for Circularity in the Built Environment – a Scoping Review and Classification. Supplementary Data to the Bibliometric Review.
<p>To transition the built environment (BE) towards circularity, i.e., maximizing the time resources spend in the BE, thus minimizing negative environmental impacts of resource usage, social innovations (SI) – understood as new ways of doing, organizing, framing, and knowing – are just as important as technological advancements. This article provides an overview of the state of the knowledge regarding SI that contribute to circularity in the BE, and proposes a framework for coherently classifying such SI in terms of their main categories and effects.</p> <p>To identify and understand the current knowledge regarding social innovations (SI) that contribute to circularity in the built environment (BE), a bibliometric review of scientific literature is conducted. It shows that the term social innovation is not frequently used in this contexts although the buzzwords circularity and circular economy are themselves often framed as SI. To assess the characteristics and contribution of SI to circularity in the BE, a scoping review that includes grey literature into the context was conducted and a framework developed to classify predominant SI using concepts from transition studies as well as the systems thinking approach. The framework is designed to help assess the potential of SI and to identify research and/or action gaps. Key findings are (1) There is a broad diversity of SIs that contribute to circularity in the BE already in the focus of research, although they are not always identified as such; (2) Most SI focus on either the design or the demolition phase (i.e., market related phases), whereas user-centered SI are less frequently discussed; and (3) It is crucial to also consider potential sustainability goal conflicts in order to guide policies that address SI as a solution.</p> <p>These datasets are the basis to the bibliometric literature review.</p>
SCOPE Climate: temperature
<p>SCOPE Climate (Spatially COherent Probabilistic Extended Climate dataset) is a 25-member ensemble of 142-year high-resolution reconstructions of precipitation, temperature and Penmann-Monteith reference evapotranspiration over France, from 1 January 1871 to 29 December 2012. SCOPE Climate results from the statical downscaling of the global extended reanalysis 20CR V2 with the SCOPE method (Caillouet et al., 2016, 2017). SCOPE Climate provides an ensemble of 25 equally-plausible spatially-coherent gridded multivariate time series. Data are available at a daily time step on a 8 km grid over France as 25 files in NetCDF format. Reconstructed values cover grid cells located only within metropolitan France national borders (including Corsica). The SCOPE Climate dataset is fully described by Caillouet et al. (2019).</p> <p>This dataset provides reconstructions of temperature as a 25-member ensemble of gridded time series. Temperature values from member 1 should be used with reconstructed precipitation/evapotranspiration values from member 1 (and so on). The corresponding precipitation dataset can be found at http://doi.org/10.5281/zenodo.1299760, and the evapotranspiration dataset at http://doi.org/10.5281/zenodo.1251843.</p>
SCOPE Climate: Penman-Monteith reference evapotranspiration
<p>SCOPE Climate (Spatially COherent Probabilistic Extended Climate dataset) is a 25-member ensemble of 142-year high-resolution reconstructions of precipitation, temperature and Penmann-Monteith reference evapotranspiration over France, from 1 January 1871 to 29 December 2012. SCOPE Climate results from the statical downscaling of the global extended reanalysis 20CR V2 with the SCOPE method (Caillouet et al., 2016, 2017). SCOPE Climate provides an ensemble of 25 equally-plausible spatially-coherent gridded multivariate time series. Data are available at a daily time step on a 8 km grid over France as 25 files in NetCDF format. Reconstructed values cover grid cells located only within metropolitan France national borders (including Corsica). The SCOPE Climate dataset is fully described by Caillouet et al. (2019).</p> <p>This dataset provides reconstructions of Penman-Monteith reference evapotranspiration as a 25-member ensemble of gridded time series. Reconstructed evapotranspiration values from member 1 should be used with reconstructed precipitation/temperature values from member 1 (and so on). The corresponding precipitation dataset can be found at http://dx.doi.org/10.5281/zenodo.1299760, and the temperature dataset at http://dx.doi.org/10.5281/zenodo.1299712.</p>
SCOPE Climate: precipitation
<p>SCOPE Climate (Spatially COherent Probabilistic Extended Climate dataset) is a 25-member ensemble of 142-year high-resolution reconstructions of precipitation, temperature and Penmann-Monteith reference evapotranspiration over France, from 1 January 1871 to 29 December 2012. SCOPE Climate results from the statical downscaling of the global extended reanalysis 20CR V2 with the SCOPE method (Caillouet et al., 2016, 2017). SCOPE Climate provides an ensemble of 25 equally-plausible spatially-coherent gridded multivariate time series. Data are available at a daily time step on a 8 km grid over France as 25 files in NetCDF format. Reconstructed values cover grid cells located only within metropolitan France national borders (including Corsica). The SCOPE Climate dataset is fully described by Caillouet et al. (2019).</p> <p>This dataset provides reconstructions of precipitation as a 25-member ensemble of gridded time series. Precipitation values from member 1 should be used with reconstructed temperature/evapotranspiration values from member 1 (and so on). The corresponding temperature dataset can be found at http://doi.org/10.5281/zenodo.1299712, and the evapotranspiration dataset at http://doi.org/10.5281/zenodo.1251843.</p>
Cretaceous-scope supplementary material to "The Cretaceous World: Plate Tectonics, Paleogeography, and Paleoclimate"
<p>Cretaceous Supplemental Materials for the study ‘<em>The Cretaceous World: Plate Tectonics, Paleogeography and Paleoclimate</em>’ by C.R. Scotese C. Vérard, L. Burgener, R. P. Elling and A.T. Kocsis (<a href="https://doi.org/10.1144/sp544-2024-28">https://doi.org/10.1144/sp544-2024-28</a>). Please cite this article if you use any material here in your publication.</p> <p>Please see the included '<em>Cretaceous Supplemental Materials Explanation.docx</em>' document for description of supplementary items and table of contents. </p>
Phanerozoic-scope supplementary material to "The Cretaceous World: Plate Tectonics, Paleogeography, and Paleoclimate" from the PALEOMAP project
<p>Phanerozoic Supplemental Materials for the study ‘<em>The Cretaceous World: Plate Tectonics, Paleogeography and Paleoclimate</em>’ by C.R. Scotese C. Vérard, L. Burgener, R. P. Elling and A.T. Kocsis (<a href="https://doi.org/10.1144/sp544-2024-28">https://doi.org/10.1144/sp544-2024-28</a>). Please cite this article if you use any material here in your publication.</p> <p>Please see the included '<em>Phanerozoic Supplemental Materials Explanation.docx</em>' document for description of supplementary items and table of contents. </p>
KM2112 SCOPE-PARAGON-1 CTD data
<table> <tbody> <tr> <td>The 2021 SCOPE-PARAGON research expedition was a coordinated effort to characterize particle dynamics and remineralization in the upper 500 m of the North Pacific Subtropical Gyre. Despite the importance of particles as key sites of biological activity in an otherwise dilute seawater medium, there remain major gaps in our understanding of the specific processes and organisms controlling particle transformations. The 2021 SCOPE-PARAGON cruise was directed towards understanding the processes and rates of biological particulate matter transformations (e.g., production, decomposition, sinking) as well as the ecological interactions that occur in association with suspended and sinking particles. These targeted studies of particle dynamics at Station ALOHA leveraged ongoing ecological and biogeochemical modeling efforts in SCOPE. Time stamps are in UTC.</td> </tr> </tbody> </table>
TN412 SCOPE-Gradients-5 CTD data
<p>The SCOPE-Gradients program was designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. The studies were grounded by three hypotheses derived from ecological theory and manifested by the Darwin ecosystem model output. 1) Optimal supply ratios of fixed nitrogen and iron result in enhanced productivity across the transition zone. 2) The size distribution of organisms (PSD) across the transition zone are predictable under steady state conditions. 3) Trends in elemental and macro-molecular composition of primary producers will vary predictably across the transition zone. We employed a suite of interdisciplinary sampling strategies on process cruises transecting across the North Pacific subtropical gyre, the transition zone and into the subpolar gyres in order to determine whether the theory underlying our models and driving hypotheses are sufficiently robust to predict in situ observations.</p>
Data archive for "Modified rice bran arabinoxylan as a nutraceutical in health and disease — A scoping review with bibliometric analysis"
<p>v1.0.0 Release with the publication of the paper on PLoS One</p> <p>Ooi, S. L., Micalos, P. S., & Pak, S. C. (2023). Modified rice bran arabinoxylan as a nutraceutical in health and disease—A scoping review with bibliometric analysis. PLOS ONE, 18(8), e0290314. https://doi.org/10.1371/journal.pone.0290314</p> <p><strong>Full Changelog</strong>: https://github.com/sooi10/RBACScoping/commits/NetworkAnalysis</p>
Research data for a scoping review on circular cities
<p>This dataset includes the research data used in a scoping review of the social impacts associated with a transition to circular cities. The dataset is a supplement to the article "The lack of social impact considerations in transitioning towards urban circular economies: a scoping review", which was published in the Sustainable Cities and Society journal (<a href="https://doi.org/10.1016/j.scs.2021.103394">https://doi.org/10.1016/j.scs.2021.103394</a>).</p>
Geographic Scope of Randomized Clinical Trials from Africa
<p><strong>Overview</strong></p> <p>This map reports the geographic scope of randomized controlled trials (RCTs) conducted in Africa, as found in PubMed. The map highlights a discrepancy between actual trial location and how trials are reported: although reports of research from Africa are often labeled as being "African" in scope, RCTs are rarely continent-wide and many countries are not represented in even a single study. The intent of the map is to visualize actual trial locations, hopefully leading to a more accurate portrayal of RCT study sites on the African continent.</p> <p><strong>Data Source and Tools</strong></p> <p>Data for the map was extracted from PubMed and the map was created in ArcGIS Online.</p> <p><strong>Audience</strong></p> <p>The map was created for an original research poster at the 2022 International Congress on Peer Review and Scientific Publication (see "Attribution" below). Its audience is researchers, clinicians, policy makers, librarians, scholarly communications stakeholders, and editors in chief interested in improving the accuracy of the reported scope of research in Africa to better inform health care research, policy, and resource distribution.</p> <p><strong>Design</strong></p> <p>A PubMed search using Medical Subject Headings and keywords representing Africa, African, and RCTs was run to identify citations published between 1968 and February 2022. The citation titles and abstracts were screened against established inclusion/exclusion criteria, with included studies continuing through a full text review and data extraction process. Total RCT representation per country was then mapped in ArcGIS with higher RCT counts represented by darker shading. The map highlights the variance in RCT representation across the continent, with some countries represented in up to 80 RCTs and many countries represented in none.</p> <p><strong>Attribution</strong></p> <p>Folafoluwa Olutobi Odetola and Marisa L. Conte conceived the research question, crafted the PubMed search, and analyzed the citation data; Tyler Nix created the map. Special thanks to Caroline Kayko (University of Michigan) for her input in the creation of the map. </p> <p>See the original research poster at:</p> <p>Odetola, FO; Conte, ML. Geographical Scope of Randomized Clinical Trials from Africa. [Poster]. 9th International Congress on Peer Review and Scientific Publication, September 8-10, 2022, Chicago, IL. Available from: <a href="https://peerreviewcongress.org/abstract/geographical-scope-of-randomized-clinical-trials-from-africa/">https://peerreviewcongress.org/abstract/geographical-scope-of-randomized-clinical-trials-from-africa/</a></p> <p>The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.</p>
Data Extraction table summarizing studies in the scoping review on co-creation of patient education materials
<p>Data extraction table for scoping review on best practices for co-creating patient-facing educational materials</p>
FK180310 SCOPE-Falkor cruise, Seaglider 626, Mission 2
<p>The SCOPE-Falkor cruise was a month long expedition, primarily to conduct mapping of the deep chlorophyll maximum (DCM) within a mesoscale cyclonic eddy. The procedure was to utilize two Long Range Autonomous Vehicles (AUVs) near the center of the eddy and to capture the microbial ecology within the DCM over several diel cycles. Two autonomous Seagliders, sg148 (mission 15) and sg626 (mission 2) were deployed along the exterior boundary of the cyclonic eddy to conduct spatial surveys of salinity, chlorophyll, optics, and oxygen, diving generally from 200 to 600 meters depth. Since the R/V Falkor and the LRAUVs would be drifting near each other and sampling close to the center of the cyclonic eddy, both Seagliders were to give the regional context by simultaneously traversing the margin of the eastern edge of the cyclonic eddy and western edge of the anti-cyclonic eddy.</p>
SCOPE VLP abundance
<p>Whole sea water collected and filtered with 0.22µm sytinge filter. Samples were then frooze in-80 and kept for analysis.For analysis, samples were filter on 0.02µm anodisc filter, stained with sybr green II and visualized using epiflourcence microscope.</p>
Data set for "Quantitative and Qualitative bibliometric scope toward the Synthesis of Rose Oxide as a Natural Product in perfumery"
<p>This is the bibliometric data for "Quantitative and Qualitative bibliometric scope toward the Synthesis of Rose Oxide as a Natural Product in perfumery" study which were derived from SCOPUS database, on 23<sup>rd</sup> September 2019, based on title search.</p>
Dataset for: Research data management in academic institutions: a scoping review
<p><strong>Overview</strong></p> <p>This dataset contains the raw data for the manuscript: <br> Perrier L, Blondal E, Ayala AP, Dearborn D, Kenny T, Lightfoot D, Reka R, Thuna M, Trimble L, MacDonald H. Research data management in academic institutions: A scoping review. PLOS One. 2017 May 23;12(5):e0178261. doi: 10.1371/journal.pone.0178261.</p> <p>Full-text available at: <a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0178261 ">http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0178261 </a></p> <p><strong>Data and Documentation Files</strong> </p> <p>Five files make up the dataset: </p> <ol> <li>Data Dictionary: RDMScopingReview_DataDictionary.pdf</li> <li>Data Abstraction Sheet: RDMScopingReview_StudyCharacteristics.csv</li> <li>Data Abstraction Sheet: RDMScopingReview_Setting.csv</li> <li>Data Abstraction Sheet: RDMScopingReview_DataCollectionTools.csv</li> <li>Data Abstraction Sheet: RDMScopingReview_Outcomes.csv</li> </ol> <p>Contact: Laure Perrier: <a href="https://orcid.org/0000-0001-9941-7129">orcid.org/0000-0001-9941-7129</a></p>
PRISMA-P (Preferred Reporting Items for Systematic Review and Meta-Analysis Protocols) of the research entitled "Development of Competences for the Fashion Designer: a Scope Review
<p>PRISMA-P (Preferred Reporting Items for Systematic review and Meta-Analysis Protocols) 2015 checklist: recommended items to address in a systematic review protocol and Check list CAPSI - Critical analysis of the articles related to the specific objective: map the current themes that permeate the competencies of fashion design professionals through a scoping review.</p>
TN397 SCOPE-Gradients-4 cruise, Wirewalker
<p>This dataset was collected during the 4th SCOPE-Gradients cruise. The SCOPE-Gradients program was designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. The Wirewalker is a wave-powered drifting profiler designed to collect autonomous, vertically-resolved oceanographic observations. The profiler moves along a wire that is suspended between a float at the sea surface and a weight placed at a depth of tens or hundreds of meters. The system horizontal displacement follows the ocean currents. Wirewalker measurements include temperature, salinity, depth, beam attenuation, backscattering, chlorophyll fluorescence, CDOM fluorescence, downwelling irradiance in four spectral bands, and dissolved oxygen concentration.</p>
KM2209 SCOPE-PARAGON-2 cruise, Wirewalker
<p>This dataset was collected during the 2022 SCOPE-PARAGON-2 cruise. This cruise was directed towards understanding the processes and rates of biological particulate matter transformations (e.g., production, decomposition, sinking) as well as the ecological interactions that occur in association with suspended and sinking particles. These targeted studies of particle dynamics at Station ALOHA leveraged ongoing ecological and biogeochemical modeling efforts in SCOPE. The Wirewalker is a wave-powered drifting profiler designed to collect autonomous, vertically-resolved oceanographic observations. The profiler moves along a wire that is suspended between a float at the sea surface and a weight placed at a depth of tens or hundreds of meters. The system horizontal displacement follows the ocean currents. Wirewalker measurements include temperature, salinity, depth, beam attenuation, backscattering, chlorophyll fluorescence, CDOM fluorescence, downwelling irradiance in four spectral bands, and dissolved oxygen concentration.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.