Find research datasets worth reusing

RB559 srp-8(ok291)V | 2011-09-06T13:29:11+01:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=FTDTrs9tXxc</li> <li>strain : RB559</li> <li>timestamp : 2011-09-06T13:29:11+01:00</li> <li>gene : srp-8</li> <li>chromosome : V</li> <li>allele : ok291</li> <li>strain_description : srp-8(ok291)V</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : clockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : srp-8 (ok291)V on food L_2011_09_06__13_29_11___2___6</li> <li>total time (s) : 898.967</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.48768</li> <li>number of segmented skeletons : 26997</li> </ul>

RB559 srp-8(ok291)V | 2011-09-20T11:59:32+01:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=QQcgLYjTMKM</li> <li>strain : RB559</li> <li>timestamp : 2011-09-20T11:59:32+01:00</li> <li>gene : srp-8</li> <li>chromosome : V</li> <li>allele : ok291</li> <li>strain_description : srp-8(ok291)V</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : srp-8 (ok291)V on food R_2011_09_20__11_59_32___2___3</li> <li>total time (s) : 898.967</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.45604</li> <li>number of segmented skeletons : 26421</li> </ul>

RB559 srp-8(ok291)V | 2011-08-11T09:58:46+01:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=6dhKEdlqiUE</li> <li>strain : RB559</li> <li>timestamp : 2011-08-11T09:58:46+01:00</li> <li>gene : srp-8</li> <li>chromosome : V</li> <li>allele : ok291</li> <li>strain_description : srp-8(ok291)V</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : srp-8 (ok291)V on food R_2011_08_11__09_58_46___2___1</li> <li>total time (s) : 899.0</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.52306</li> <li>number of segmented skeletons : 26658</li> </ul>

RB559 srp-8(ok291)V | 2011-09-20T12:19:00+01:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=dskUSAKDmOk</li> <li>strain : RB559</li> <li>timestamp : 2011-09-20T12:19:00+01:00</li> <li>gene : srp-8</li> <li>chromosome : V</li> <li>allele : ok291</li> <li>strain_description : srp-8(ok291)V</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : clockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : srp-8 (ok291)V on food L_2011_09_20__12_19___3___4</li> <li>total time (s) : 898.227</li> <li>frames per second : 24.0385</li> <li>video micrometers per pixel : 4.58157</li> <li>number of segmented skeletons : 21581</li> </ul>

RB559 srp-8(ok291)V | 2011-08-11T10:19:00+01:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=31pka4MsUjE</li> <li>strain : RB559</li> <li>timestamp : 2011-08-11T10:19:00+01:00</li> <li>gene : srp-8</li> <li>chromosome : V</li> <li>allele : ok291</li> <li>strain_description : srp-8(ok291)V</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : srp-8 (ok291)V on food R_2011_08_11__10_19___3___2</li> <li>total time (s) : 898.102</li> <li>frames per second : 24.0385</li> <li>video micrometers per pixel : 4.53662</li> <li>number of segmented skeletons : 21323</li> </ul>

RB559 srp-8(ok291)V | 2011-09-20T11:37:44+01:00

<blockquote> This experiment is part of the C.elegans behavioural database. For more information and the complete collection of experiments visit http://movement.openworm.org </blockquote> <ul> <li>preview link : https://www.youtube.com/watch?v=-GymMGFbia4</li> <li>strain : RB559</li> <li>timestamp : 2011-09-20T11:37:44+01:00</li> <li>gene : srp-8</li> <li>chromosome : V</li> <li>allele : ok291</li> <li>strain_description : srp-8(ok291)V</li> <li>sex : hermaphrodite</li> <li>stage : adult</li> <li>ventral_side : anticlockwise</li> <li>media : NGM agar low peptone</li> <li>arena : <ul> <li>style : petri</li> <li>size : 35</li> <li>orientation : away</li> </ul> </li> <li>food : OP50</li> <li>habituation : 30m wait</li> <li>who : Laura Grundy</li> <li>protocol : Method in E. Yemini et al. doi:10.1038/nmeth.2560. Worm transferred to arena 30 minutes before recording starts.</li> <li>lab : <ul> <li>name : William R Schafer</li> <li>location : MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK</li> </ul> </li> <li>software : <ul> <li>name : tierpsy (https://github.com/ver228/tierpsy-tracker)</li> <li>version : cbfc23eb4f1ac2f29be75ade7a937eed58a5b219</li> <li>featureID : @OMG</li> </ul> </li> <li>base_name : srp-8 (ok291)V on food R_2011_09_20__11_37_44___1___2</li> <li>total time (s) : 899.0</li> <li>frames per second : 30.03</li> <li>video micrometers per pixel : 4.44972</li> <li>number of segmented skeletons : 26692</li> </ul>

A Randomized, Double-blind, Placebo-controlled Study of Delandistrogene Moxeparvovec (SRP-9001) for Duchenne Muscular Dystrophy (DMD)

ClinicalTrials.gov study NCT03769116. IPD Sharing: Not stated. Countries: 1. Publications: 1.

A Gene Transfer Therapy Study to Evaluate the Safety of Delandistrogene Moxeparvovec (SRP-9001) in Participants With Duchenne Muscular Dystrophy (DMD)

ClinicalTrials.gov study NCT03375164. IPD Sharing: Not stated. Countries: 1. Publications: 2.

Phase I/II Study of SRP-4053 in DMD Patients

ClinicalTrials.gov study NCT02310906. IPD Sharing: Not stated. Countries: 4. Publications: 2.

A Gene Transfer Therapy Study to Evaluate the Safety and Efficacy of Delandistrogene Moxeparvovec (SRP-9001) in Participants With Duchenne Muscular Dystrophy (DMD)

ClinicalTrials.gov study NCT05096221. IPD Sharing: Not stated. Countries: 9. Publications: 5.

Supplementary material 4 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment with the SRP RNA sequences of Dumesic et al. (2015; Stereum hirsutum, Heterobasidion irregulare, and Heterobasidion annosum) aligned to our newly generated ITS sequences of Russula and Lactarius.

Supplementary material 3 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

ITS/SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment comprising the 63 public ITS1 sequences with SRP RNA found in them, the three newly generated sequences, and the SRP RNA sequences from Dumesic et al. (2015) (Stereum hirsutum, Heterobasidion irregulare, and Heterobasidion annosum).

Supplementary material 2 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

ITS multiple sequence alignment : Explanation note: A multiple sequence alignment in the NEXUS format (Maddison et al. 1997) comprising all 63 matching ITS sequences, plus the three newly generated ones (KU356730, KU356731, and KU356732). The alignment was produced in MAFFT without manual adjustment (Katoh and Standley 2013). The alignment is composed of partial nSSU (bases 1-34 in the alignment), the full ITS1 (bases 35-678), the full 5.8S (bases 679-838), the full ITS2 (bases 839-1395), and partial nLSU (bases 1396-end). The SRP RNA occupies position 203-474 in the alignment. The alignment is provided for overview purposes only; the two-order nature of the taxa (Boletales and Russulales) coupled with the high variability of the ITS region jointly mean that the alignment will not be suited for phylogenetic inference.

Supplementary material 1 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Output from cmsearch and primers used : Explanation note: A) The output from cmsearch showing all 63 relevant matches to the three ectomycorrhizal lineages. B) Detail of the primers used to re-amplify the specimens.

closedIPD-NOFeb 2026View details →

Single Sitting SRP vs Supra-gingival Scaling Followed by Sub-gingival SRP After One Week

ClinicalTrials.gov study NCT05449964. IPD Sharing: NO. Countries: 1. Publications: 1.

FM-SRP and Tooth Extraction Improve Type 2 Diabetes Mellitus in Periodontitis

ClinicalTrials.gov study NCT02874963. IPD Sharing: UNDECIDED. Countries: 1. Publications: 23.

Evaluation of Albumin Platelet-Rich Fibrin Following SRP in Patients With Periodontitis

ClinicalTrials.gov study NCT07363135. IPD Sharing: Not stated. Countries: 1. Publications: 0.

PerioWave Re-Treatment Protocol Compared to Scaling and Root Planing (SRP) and a Single Treatment With PerioWave

ClinicalTrials.gov study NCT00336661. IPD Sharing: Not stated. Countries: 1. Publications: 45.

closedIPD-NOFeb 2026View details →

Cardiac Rehabilitation of Stroke Survivors (SRP-CROSS)

ClinicalTrials.gov study NCT05651945. IPD Sharing: NO. Countries: 1. Publications: 24.