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153 results for “Signs and Symptoms”
SympTEMIST Corpus: Gold Standard annotations for clinical symptoms, signs and findings information extraction
<p><strong>SympTEMIST</strong> stands for Symptoms TExt MIning Shared Task. It is a shared task and set of resources focused on the <strong>detection of mentions, normalization and indexing of symptoms, signs and findings in medical documents</strong> in <strong>Spanish</strong>. SympTEMIST is complementary to the DisTEMIST (https://temu.bsc.es/distemist) and MedProcNER/ProcTEMIST (https://temu.bsc.es/medprocner) corpora as they all use the same document collection.</p> <p> </p> <p><strong>Please cite if you use this dataset:</strong></p> <p>"Lima-López, S., Farré-Maduell, E., Gasco-Sánchez, L., Rodríguez-Miret, J. and Krallinger, M. (2023). Overview of SympTEMIST at BioCreative VIII: corpus, guidelines and evaluation of systems for the detection and normalization of symptoms, signs and findings from text. In: <em>Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the era of Generative Models</em>."</p> <p> </p> <p>This repository includes the:</p> <ul> <li><strong>Train </strong>and<strong> Test Set </strong>for the three subtasks</li> <li><strong>SYMPTEMIST gazetteer </strong>of <strong>SNOMED symptoms, signs & findings </strong></li> <li><strong>Multilingual </strong>Silver Standard<strong> </strong>in <strong>9 languages:</strong> <ul> <li><em><strong>English</strong></em></li> <li><em><strong>Portuguese</strong></em></li> <li><em><strong>French</strong></em></li> <li><em><strong>Italian</strong></em></li> <li><em><strong>Romanian</strong></em></li> <li><em><strong>Catalan</strong></em></li> <li><em><strong>Swedish</strong></em></li> <li><em><strong>Dutch</strong></em></li> <li><em><strong>Czech</strong></em></li> </ul> </li> <li><strong>Background set</strong> of over 15,000 clinical cases.</li> <li><strong>Spanish</strong> Silver Standard (predictions by participants over the background set)</li> </ul> <p> </p> <p>Please read the README file attached for more information on folder structure and file format.</p> <p> </p> <p>SympTEMIST was developed by the Barcelona Supercomputing Center's NLP for Biomedical Information Analysis and used as part of BioCREATIVE 2023. For more information on the corpus, annotation scheme and task in general, please visit: https://temu.bsc.es/symptemist.</p> <p> </p> <p><strong>Resources:</strong></p> <ul> <li><a href="https://temu.bsc.es/symptemist/"><strong>Task web</strong></a></li> <li><a href="https://biocreative.bioinformatics.udel.edu/"><strong>BioCreative web</strong></a></li> <li><strong>Citation: </strong>Lima-López, S., Farré-Maduell, E., Gasco-Sánchez, L., Rodríguez-Miret, J. and Krallinger, M. (2023). Overview of SympTEMIST at BioCreative VIII: corpus, guidelines and evaluation of systems for the detection and normalization of symptoms, signs and findings from text. In: <em>Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the era of Generative Models</em>.</li> <li><a href="../records/8246440"><strong>Annotation guidelines</strong></a></li> <li><a href="../records/10103191"><strong>BioCreative/AMIA workshop proceedings</strong></a></li> <li><a href="../doi/10.5281/zenodo.10104546"><strong>Overview paper</strong></a></li> <li><a href="https://www.youtube.com/playlist?list=PLyLDDulunoofv79Pci0-y2rGP5GOBoZhp"><strong>Youtube videos (overview & teams)</strong></a></li> <li><a href="https://www.slideshare.net/MartinKrallinger/symptemist-shared-task-on-symptoms-signs-and-findings-detection-and-normalization-task-overview-talk-at-biocreative-viii-workshop-amia-2023"><strong>SympTEMIST overview talk slides at BioCreative/AMIA workshop</strong></a></li> </ul> <p> </p> <p><strong>License</strong></p> <p>This work is licensed under a <a href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.</p> <p><strong>Contact</strong></p> <p>If you have any questions or suggestions, please contact us at:</p> <p>- Salvador Lima-López (<salvador [dot] limalopez [at] gmail [dot] com>)<br>- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>)</p> <p><strong>Additional resources and corpora</strong></p> <p>If you are interested in SympTEMIST, you might want to check out these corpora and resources:</p> <ul> <li><a href="../records/7614764">DisTEMIST</a> (Corpus of disease mentions and normalization to SNOMED CT, same document collection)</li> <li><a href="../records/8224056">MedProcNER </a>(Corpus of clinical procedure mentions and normalization to SNOMED CT, same document collection)</li> <li><a href="../records/4270158">PharmaCoNER</a> (Corpus of medications, drugs, chemical substances, genes, proteins and vaccine mentions and normalization, same document collection)</li> <li><a href="../records/7116201">MEDDOPROF</a> (Corpus of mentions of professions, occupations and working status and normalization, different document collection with some overlapping documents)</li> <li><a href="../records/8403498">MEDDOPLACE</a> (Corpus of mentions of place-related entity mentions, including departments, nationalities or patient movements etc.. and normalization, different document collection with some overlapping documents)</li> <li><a href="../records/4279323">MEDDOCAN</a> (Corpus of mentions of Personal Health Identifiers (PHI), modified synthetic verions of the document collection)</li> <li><a href="../records/3978041">CANTEMIST</a> (Corpus of cancer tumor morphology mentions and normalization, different document collection)</li> <li><a href="../records/3837305">CodiESp</a> (Corpus of clinical case reportes with assigned clinical codes from ICD10, Spanish version, same document collection)</li> <li><a href="../records/7684093">LivingNER</a> (Corpus of mentions of species, including human/family members, pathogens, food, etc.. and normalization to NCBI Taxonomy, different document collection with some overlapping documents)</li> <li><a href="../records/2560344">SPACCC-POS</a> (Corpus of clinical case reports in Spanish annotated with POS-tags, same document collection)</li> <li><a href="../records/2560338">SPACCC-TOKEN</a> (Corpus of clinical case reports in Spanish annotated with token-tags (word mention boundaries), same document collection)</li> <li><a href="../records/2560338">SPACCC-SPLIT</a> (Corpus of clinical case reports in Spanish annotated with sentence boundary-tags, same document collection)</li> <li><a href="../records/5602914">MESINESP-2</a> (Corpus of manually indexed records with DeCS /MeSH terms comprising scientific literature abstracts, clinical trials, and patent abstracts, different document collection)</li> </ul> <p> </p>
Validation of a Questionnaire to Identify Signs and Symptoms of Nephrogenic Systemic Fibrosis
ClinicalTrials.gov study NCT00869479. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Effect of SHR8058 on Signs and Symptoms of Dry Eye Disease Associated With Meibomian Gland Dysfunction
ClinicalTrials.gov study NCT05515471. IPD Sharing: UNDECIDED. Countries: 1. Publications: 2.
Study of Retinal Findings in People With Signs and Symptoms of Alzheimer s Disease Enrolled in 09-M-0198
ClinicalTrials.gov study NCT02226835. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Description of Sign-and-symptom Associations at Acromegaly Diagnosis.
ClinicalTrials.gov study NCT02012127. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Screening and Evaluation of Patients With Signs and Symptoms of Alzheimer's Disease
ClinicalTrials.gov study NCT00955422. IPD Sharing: Not stated. Countries: 1. Publications: 5.
Immediate Compared With Delayed Chemotherapy in Advanced Colorectal Cancer Without Signs or Symptoms of Disease
ClinicalTrials.gov study NCT00002570. IPD Sharing: NO. Countries: 1. Publications: 1.
The Effect of Reiki and EFT on Symptom Burden, Disease Adaptation, Vital Signs and Catheter-Related Pain in HD Patients
ClinicalTrials.gov study NCT06772467. IPD Sharing: NO. Countries: 1. Publications: 1.
A Study to Assess the Effect of Tocilizumab + Methotrexate on Signs and Symptoms in Patients With Moderate to Severe Active Rheumatoid Arthritis
ClinicalTrials.gov study NCT00106548. IPD Sharing: Not stated. Countries: 17. Publications: 4.
Ketosis Impact on Signs & Symptoms of Schizophrenia and Bipolar disorderS
ClinicalTrials.gov study NCT06426134. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Food Supplements Based on Nettle and Peppermint to Control Signs and Symptoms Induced by Cancer Therapies
ClinicalTrials.gov study NCT04474951. IPD Sharing: NO. Countries: 1. Publications: 3.
A Study of Liquid Certolizumab Pegol as Additional Medication to Methotrexate in the Treatment of Signs and Symptoms of Rheumatoid Arthritis and in Prevention of Joint Damage in Patients With Active R
ClinicalTrials.gov study NCT00160602. IPD Sharing: Not stated. Countries: 15. Publications: 8.
Safety and Effectiveness of EyePeace on Signs and Symptoms of Dry Eye Disease
ClinicalTrials.gov study NCT06158997. IPD Sharing: NO. Countries: 1. Publications: 10.
Evaluation of MolecuLight i:X as an Adjunctive Fluorescence Imaging Tool to Clinical Signs and Symptoms for the Identification of Bacteria-containing Wounds
ClinicalTrials.gov study NCT03540004. IPD Sharing: NO. Countries: 1. Publications: 2.
Evaluation of the Efficacy and Safety of Silodosin in the Treatment of the Signs and Symptoms of BPH
ClinicalTrials.gov study NCT00359905. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Effect of Consuming a Nutraceutical Composition on Signs and Symptoms in Adult Patients With Irritable Bowel Syndrome
ClinicalTrials.gov study NCT07103772. IPD Sharing: NO. Countries: 1. Publications: 8.
Safety and Efficacy of NovaTears® + Omega-3 (0.2%) Eye Drops on Signs and Symptoms of Dry Eye
ClinicalTrials.gov study NCT04521465. IPD Sharing: NO. Countries: 1. Publications: 1.
Pelvic Floor Signs and Symptoms in Women and Men
ClinicalTrials.gov study NCT03558802. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Symptoms and Clinical Signs of Hypogonadism in Testicular Cancer Survivors
ClinicalTrials.gov study NCT02240966. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Validation of Vital Signs and Symptoms for the Diagnosis of Serious Infections in Children in the Paediatric A&E.
ClinicalTrials.gov study NCT01396798. IPD Sharing: Not stated. Countries: 1. Publications: 2.
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