Find research datasets worth reusing

opencc-by-4.0Jan 2022View details →

Supplementary Figures, Files and Datasets: Reduction of Metastasis via Epigenetic Modulation in a Murine Model of Metastatic Triple Negative Breast Cancer (TNBC)

*denotes authors contributed equally to this work FileS1_Figures_Proofread.pdf: (Updated) Supplementary Figures (Figure S1: RNA-sequencing experimental design; Figure S2: Experiments measuring proliferation between drug-treated and control conditions indicate no significant difference 6 hrs. after scratch; Figure S3: Effect of 4SC-202 treatment on 4T1 tumor volume in mice; Figure S4: Differential expression between 4SC-202- and Vorinostat-treated 4T1 tumors; Figure S5: Top underexpressed differentially expressed genes 4SC-202 vs Control; Figure S6: HDACi target genes are not differentially expressed in RNA-sequencing data from 4SC-202-treated mice relative to control mice; Figure S7: Differential expression and expression of genes implicated gene ontology biological processes of interest; Figure S8: IPA visualization of the Regulation of Epithelial Mesenchymal Transition By Growth Factors Pathway emphasizing influence of 4SC-202-induced consensus DEGs; Figure S9: 4SC-202 modulates gene networks related to Cancer, Endocrine System Disorders, and Organismal Injury and Abnormalities; Figure S10: 4SC-202 modulates gene networks related to Cancer, Cellular Movement, and Organismal Injury and Abnormalities; Figure S11: 4SC-202 modulates gene networks related to Cell-mediated Immune Response, Cellular Movement, and Hematological System Development and Function; Figure S12: 4SC-202 differentially modulates gene networks related to Cellular Movement, Hematological System Development and Function, and Immune Cell Trafficking relative to Vorinostat); File S2: DAVID 4SC vs. Control 70DEG results: DAVID Annotation 4SC-202 vs Control 70 DEGs: Full functional annotation clustering results from DAVID Bioinformatics Resource for the 4SC-202-induced, consensus differentially expressed genes.; File S3: DAVID 4SC vs. Vori 33 DEGs results: DAVID Annotation 4SC-202 vs Control 33 DEGs: Full functional annotation clustering results from DAVID Bioinformatics Resource for the 4SC-202 versus Vorinostat consensus differentially expressed genes.; File S4: IPA 70 All Results: IPA Canonical Pathways Enrichment 70 DEGs: Full Ingenuity Pathway Analysis (IPA) canonical pathways enrichment results for the 4SC-202-induced, consensus differentially expressed genes.; File S5: IPA 33 Summary: Ingenuity Pathway Analysis (IPA) summary of the enrichment results for the 4SC-202-induced, consensus differentially expressed genes against Vorinostat.; File S6: Experiment RIN Numbers: RNA extraction quality control step, one of the various steps of quality control within the RNA-sequencing workflow. These RNA Integrity numbers are from the Agilent 2100 Bioanalyzer that looks for RNA contamination and degradation.; File S7: 4SC vs. Control all DEGs: Workflow results including all DEGs for 4SC-202 vs Control: Full excel file that contains all of the DEGs from the results of all workflows for 4SC-202.

opencc-by-4.0Apr 2024View details →

Triple oxygen isotope variability of precipitation in a tropical mountainous region

Triple oxygen isotope data associated with monthly integrated precipitation and discrete (subsurface-sourced) tap water samples collected over one year from sites across Panama.

opencc-by-4.0May 2024View details →

Data for Stochastically accelerated perturbative triples correction in coupled cluster calculations

This files contains all the data used to perform the plots in the "Stochastically accelerated perturbative triples correction in coupled cluster calculations" article.

Supplementary online material for KIC 4150611: A quadruply eclipsing heptuple star system with a g-mode period-spacing pattern. Eclipse modelling of the triple and spectroscopic analysis

Additional figures and data supplementary to the published (or soon-to-be-published) paper KIC 4150611: A quadruply eclipsing heptuple star system with a g-mode period-spacing pattern Eclipse modelling of the triple and spectroscopic analysis.

Triple-resonance NMR spectra of Tau 1-239 protein fragment acquired at 5 C, 10 C and 15 C

Dataset used in a paper "Using temperature coefficients to support resonance assignment of intrinsically disordered proteins" by Paulina Putko, Javier Agustin Romero, Christian F. Pantoja, Markus Zweckstetter, Krzysztof Kazimierczuk, and Anna Zawadzka-Kazimierczuk The following spectra have been collected: <table> <tbody> <tr> <td>Experiments T : 5 C</td> <td>NUS points (Recorded)</td> <td>NS (scans) (Recorded)</td> </tr> <tr> <td>HNCO</td> <td>600</td> <td>4</td> </tr> <tr> <td>HN(CA)CO</td> <td>1000</td> <td>16</td> </tr> <tr> <td>HNCA</td> <td>600</td> <td>8</td> </tr> <tr> <td>HN(CO)CA</td> <td>450</td> <td>8</td> </tr> <tr> <td> CBCA(CO)NH (HAHB)CBCA(CO)NH </td> <td>1000</td> <td> </td> </tr> <tr> <td>Experiments T : 10 C</td> <td>NUS points (Recorded)</td> <td>NS (scans) (Recorded)</td> </tr> <tr> <td>HNCO</td> <td>600</td> <td>4</td> </tr> <tr> <td>HN(CO)CA</td> <td>450</td> <td>8</td> </tr> <tr> <td>(HAHB)CBCA(CO)NH</td> <td>1000</td> <td>8</td> </tr> <tr> <td>Experiments T : 15 C</td> <td>NUS points (Recorded)</td> <td>NS (scans) (Recorded)</td> </tr> <tr> <td>HNCO</td> <td> 600</td> <td> 4</td> </tr> <tr> <td>HN(CO)CA</td> <td> 450</td> <td> 8</td> </tr> <tr> <td>(HAHB)CBCA(CO)NH</td> <td> 1000</td> <td> 8</td> </tr> <tr> <td> </td> <td> </td> <td> </td> </tr> </tbody> </table>

opencc-by-nc-4.0Feb 2018View details →

Supplementary dataset for 'A randomised phase III trial of carboplatin compared with docetaxel in BRCA1/2 mutated and pre-specified triple negative breast cancer "BRCAness" subgroups: the TNT Trial'

This dataset corresponds to the PAM50 gene expression profiling of primary tumour samples that were collected as part of the TNT clinical trial (ISRCTN97330959, NCT00532727, CRUK/07/012). NanoString® platform nCounter analysis was performed on the RNA extracts at the Institute of Cancer Research and Royal Marsden Hospital. The manuscript describing the trial outcome is currently under review in Nature Medicine.

opencc-by-sa-4.0Dec 2017View details →

Data supporting "Universality of Free Fall Shown by Orbital Motion of a Pulsar in a Stellar Triple System"

This is a collection of data supporting the research paper "Orbital Motion of a Pulsar in a Stellar Triple System Shows Universality of Free Fall". The main data content (the ".tim" file) is a set of pulse arrival times, the primary input to the fitting process, in tempo2 format. These times are annotated with post-fit residuals and derivatives with respect to fit parameters using the tempo2 format's per-TOA flags. Additional files include the data that went into several figures, plus the above converted to CSV format - but note that the CSV format does not record the pulse arrival times with sufficient precision to permit fitting. Derivative and uncertainty information may permit reanalysis of the systematics.

opencc-by-4.0Jul 2018View details →

Data File for Manuscript "Comprehensive Molecular Simulation on Triple Negative Breast Cancer Transcriptomics Features of mir-145 and 3' UTR of ARF6 mRNA"

This is a data file for the manuscript "Comprehensive Molecular Simulation on Triple Negative Breast Cancer Transcriptomics Features of mir-145 and 3’ UTR of ARF6 mRNA". It comprises of molecular docking (AUTODOCK VINA 4) and dynamics data (NAMD and VMD).

opencc-by-4.0Nov 2018View details →

The TRIple-frequency and Polarimetric radar Experiment for improving process observation of winter precipitation dataset

The combined TRIple-frequency and Polarimetric radar Experiment for improving process observation of winter precipitation (TRIPEx) was a joint field experiment of the University of Cologne, the University of Bonn, the Karlsruhe Institute of Technology (KIT), and the Research Center Jülich. TRIPEx took place at the Jülich Observatory for Cloud Evolution (JOYCE) from 11 November 2015 until 04 January 2016.  During this experiment, the X-, Ka- and W-band ground-based Doppler radars were used vertically pointing to observe the clouds. Here we provide the level 2 of the dataset collected during this campaign. Several step processing were applied to minimize the radar offset and attenuation. In addition, we provide the attenuation correction and the quality flags for each  processing steps to allow the user to retrieve the data without our correction. The raw and the level 1 of the dataset are available for the users on request from the corresponding author.

opencc-by-4.0Mar 2019View details →

The TRIple-frequency and Polarimetric radar Experiment for improving process observation of winter precipitation (version 2)

The combined TRIple-frequency and Polarimetric radar Experiment for improving process observation of winter precipitation (TRIPEx) was a joint field experiment of the University of Cologne, the University of Bonn, the Karlsruhe Institute of Technology (KIT), and the Research Center Jülich. TRIPEx took place at the Jülich Observatory for Cloud Evolution (JOYCE) from 11 November 2015 until 04 January 2016.  During this experiment, the X, Ka and W Band ground-based Doppler radars were used vertically pointing to observe the clouds. Here we provide level 2 of the dataset collected during this campaign. Several step processing were applied to minimize the radar offset and attenuation. In addition, we provide the attenuation correction and the quality flags for each processing steps to allow the user to retrieve the data without our correction. The raw and the level 1 of the dataset are available for the users on request from the corresponding author.

opencc-by-4.0Jul 2019View details →

Density-pressure isotherms of the 2D Lennard Jones fluid between the triple point temperature and the critical temperature

Pressure-density isotherms of the 2D truncated-shifted Lennard-Jones fluid, with \(r_{c} = 2.5 \sigma\): \(V\left(r\right) = \begin{cases} U\left(r\right) - U\left(r_{c}\right) & \text{if } 0 < r < r_{c}\\ 0 & \text{if } r \geq r_{c} \end{cases}\) with \(U\left(r\right) = 4 \varepsilon \left(\left(\frac{\sigma}{r}\right)^{12}-\left(\frac{\sigma}{r}\right)^{6}\right)\) All thermodynamic quantities are reduced with respect to the Lennard-Jones parameters \(\sigma\) and \(\epsilon\) : <ul> <li>Number 2D density \(\rho^{*} = \sigma^{2}\rho\)</li> <li>2D pressure \(P^{*} = \frac{\sigma^{2}}{\varepsilon}P\)</li> <li>Temperature \(T^{*} = \frac{k_{B} T}{\varepsilon}\)</li> </ul> The temperatures of the isotherms are \(T^{*} = 0.40\), \(T^{*} = 0.41\), \(T^{*} = 0.42\), \(T^{*} = 0.43\), and \(T^{*} = 0.44\) which corresponds to the range of liquid-gas coexistence, between the triple point temperature (\(T_{t}^{*} \approx 0.40\)) and the critical temperature (\(T_{c}^{*} \approx 0.46\)). Here are reported the isotherms for the gas and liquid phases and the coexistence points. The liquid and gas isotherms are obtained by Molecular Dynamics with the LAMMPS software (<a href="https://lammps.sandia.gov/">https://lammps.sandia.gov/</a>). The density and temperature are imposed (Langevin thermostat) and the pressure is computed with the virial estimate. The simulations are performed for 2D systems of dimensions \(L_{x} = 44.9 \sigma\) and \(L_{y} = 46.7 \sigma\) containing between 1300 and 1900 particles in the liquid phase, and 4 to 200 particles in the gas phase. The systems are equilibrated over \(3 \cdot 10^{7}\) times steps. Then, the computation of the thermodynamic properties is performed over a variable number of time steps in order to reach a targeted accuracy (standard deviation of the pressure). The longest simulations (liquid approaching cavitation) require about \(10^{9}\) time steps of computation. The block averaging method is used to estimate the standard deviation of pressure. The data are provided in csv files named as follows : 'liq_TX.XX.txt' for the liquid at temperature \(T^{*} = X.XX\), and 'gas_TX.XX.txt' for the gas at temperature \(T^{*} = X.XX\). The first column is the inverse number density \(1/\rho^{*}\), the second column is the pressure \(P^{*}\), and the last column is the standard deviation of the pressure \(\Delta P^{*}\). The coexistence points are obtained by Gibbs ensemble Monte Carlo with an in house code. The temperature is imposed and the liquid and gas densities and the coexistence pressure (virial estimate) are computed. The csv file 'coexistence.txt' contains the coexistence data in the following order: the first column is the temperature \(T^{*}\), the second and third columns are the average and standard deviation of the inverse of the gas number density \(1/\rho_{gas}^{*}\) and \(\Delta\left(1/\rho_{gas}^{*}\right)\), the forth and fifth columns are the average and standard deviation of the inverse of the liquid number density \(1/\rho_{liq}^{*}\) and \(\Delta\left(1/\rho_{liq}^{*}\right)\), and the sixth and seventh columns are the average and standard deviation of the coexistence pressure \(P^{*}\) and \(\Delta P^{*}\). The files 'chart_gas.pdf' and 'chart_liq.pdf' provide graphical display of the data, for the gas and liquid phases respectively.

opencc-by-4.0Dec 2016View details →

Figure 1 in Capturing Males of Pestiferous Fruit Flies (Diptera: Tephritidae): Is the Combination of Triple-Lure Wafers and Insecticidal Strips as Effective as Standard Treatments?

Figure 1. Captures of Ceratitis capitata, Bactrocera dorsalis, and Bactrocera cucurbitae males in Jackson traps baited with standard lures or triple-lure wafers over a 12-week interval in October-December, 2013, in a coffee field near Haleiwa, Oahu. Symbols represent mean values of 15 traps; error bars represent 1 SE.

Figure 1 in A tritrophic interaction at the Brazilian triple frontier: new record of parasitism on Conocephalus saltator (Sausurre, 1859) (Orthoptera, Tettigoniidae)

Figure 1 Individuals of Conocephalus saltator. A: Adult male; B: Adult female; C: Male nymph; D: Female nymph; E: Male nymph, feeding on grass seeds.

Figure 3 in A tritrophic interaction at the Brazilian triple frontier: new record of parasitism on Conocephalus saltator (Sausurre, 1859) (Orthoptera, Tettigoniidae)

Figure 3 All reared specimens of Perilampus sp. A: specimen 477, lateral view; B: specimen 477, dorsal view; C: specimen 40; D: specimen 337; E: specimen 55.

opencc-by-4.0Oct 2024View details →

A MEMBRANE INLET LASER SPECTROMETER FOR IN SITU MEASUREMENT OF TRIPLE WATER ISOTOPOLOGUES

This dataset contains laboratory test results characterizing the performance of a new instrument designed for in situ measurement of water isotopes. The system combines Optical Feedback Cavity-Enhanced Absorption Spectroscopy (OFCEAS) with a dual inlet pervaporation system.

Figure 8. Stenothoe menezgweni, DIVA 2 in Stenothoidae (Crustacea: Amphipoda) of hydrothermal vents and surroundings on the Mid-Atlantic Ridge, Azores Triple Junction zone

Figure 8. Stenothoe menezgweni, DIVA 2, PL26, holotype female. (1) Antenna 1; (2) scale as accessory flagellum; (3) antenna 2; (4) maxilliped; (5) gnathopod 1; (6) gnathopod 2; (7) pereiopod 3; (8) pereiopod 5. Scale bars: 100 mm.

Figure 1 in Stenothoidae (Crustacea: Amphipoda) of hydrothermal vents and surroundings on the Mid-Atlantic Ridge, Azores Triple Junction zone

Figure 1. Torometopa saldanhae, ATOS, PL115-13, holotype male. (1) Head; (2) antenna 1; (3) antenna 2; (4) mandible; (5) maxilla 1; (6) maxilla 2; (7) maxilliped; (8) gnathopod 1; (9) gnathopod 2; (10) pereiopod 3; (11) epimeral plate 3. Scale bars: 100 mm.

Figure 6 in Stenothoidae (Crustacea: Amphipoda) of hydrothermal vents and surroundings on the Mid-Atlantic Ridge, Azores Triple Junction zone

Figure 6. Stenothoe marvela, MARVEL, PL1199, holotype female. (1) Maxilliped; (2) pereiopod 4; (3) pereiopod 5; (4) pereiopod 6; (5) pereiopod 7; (6) uropod 1; (7) uropod 2; (8) uropod 3; (9) telson. Scale bars: 100 mm.

Figure 5 in Stenothoidae (Crustacea: Amphipoda) of hydrothermal vents and surroundings on the Mid-Atlantic Ridge, Azores Triple Junction zone

Figure 5. Stenothoe marvela, MARVEL, PL1199, holotype female. (1) Habitus; (2) antenna 1; (3) antenna 2; (4) mandible; (5) maxilla 1; (6) maxilla 2; (7) gnathopod 1; (8) gnathopod 2; (9) pereiopod 3; (10) epimeral plate 3. Scale bars: 100 mm.

Figure 3. Stenothoe divae, DIVA 1 in Stenothoidae (Crustacea: Amphipoda) of hydrothermal vents and surroundings on the Mid-Atlantic Ridge, Azores Triple Junction zone

Figure 3. Stenothoe divae, DIVA 1, DV11-5. (1, 2, 5, 6) Holotype male and (4) paratype female: (1) habitus; (2) gnathopod 1; (5) pereiopod 3; (6) epimeral plate 3. (3) Holotype male: gnathopod 2. (4) Paratype female: gnathopod 2. Scale bars: 100 mm.