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67
datasets available to search
ShareScore release 0.9.0
Dataset results
67 results for “Temporal genomics”
Data from: Genomic regions underlying metabolic and neuronal signaling pathways are temporally consistent outliers in a moving avian hybrid zone
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Genome reduction is associated with bacterial pathogenicity across different scales of temporal and ecological divergence - between species core gene alignments
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Plasmodium falciparum genomic surveillance reveals spatial and temporal trends, association of genetic and physical distance, and household clustering
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The genome-wide signature of short-term temporal selection
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Grasshopper genome reveals long-term conservation of the X chromosome and temporal variation in X chromosome evolution
<p>We present the first chromosome-level genome assembly of the grasshopper, <em>Locusta migratoria</em>, one of the largest insect genomes. We use coverage differences between females (XX) and males (X0) to identify the X chromosome gene content, and find that the X chromosome shows both complete dosage compensation in somatic tissues and an underrepresentation of testes-expressed genes. Remarkably, X-linked gene content from <em>L. migratoria </em>is highly conserved across four insect orders, namely Orthoptera, Hemiptera, Coleoptera and Diptera, and the 800 Mb grasshopper X chromosome is homologous to the fly ancestral X chromosome despite 400 million years of divergence, suggesting either repeated origin of sex chromosomes with highly similar gene content, or long-term conservation of the X chromosome. We use this broad conservation of the X chromosome to test for temporal dynamics to Fast-X evolution, and find evidence of a recent burst evolution for new X-linked genes in contrast to slow evolution of X-conserved genes. Additionally, our results reveal the X chromosome represents a hotspot for adaptive protein evolution related migration and the locust swarming phenotype. Overall, our results reveal a remarkable case of conservation and adaptation on the X chromosome.</p>
Temporal Genomics Mechanisms Underlying Disease and Aging [DNA Methylation]
GEO Series GSE227809. Homo sapiens. 182 samples. Type: Methylation profiling by array.
Genome-wide microRNA expression profiles of rat hippocampus in a chronic temporal lobe epilepsy model induced by amygdala stimulation
GEO Series GSE52443. Rattus norvegicus. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Fibroblasts as an in vitro model of circadian genetic and genomic studies: A temporal analysis (RNA-Seq)
GEO Series GSE263713. Homo sapiens. 78 samples. Type: Expression profiling by high throughput sequencing.
Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons [ChIP-Seq]
GEO Series GSE166011. Mus musculus. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Temporal dynamics and genomic programming of plasma cell fates
GEO Series GSE240813. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein
GEO Series GSE48875. Human betaherpesvirus 5. 33 samples. Type: Genome binding/occupancy profiling by genome tiling array; Expression profiling by genome tiling array.
Genome-wide DNA methylation profiling in the superior temporal gyrus reveals epigenetic signatures associated with Alzheimer's disease
GEO Series GSE76105. Homo sapiens. 68 samples. Type: Methylation profiling by genome tiling array.
Temporal genomic analysis of melanoma rejection identifies regulators of tumor immune evasion [scc35]
GEO Series GSE247057. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Temporal Genomics Mechanisms Underlying Disease and Aging [RNA-Seq]
GEO Series GSE227812. Homo sapiens. 221 samples. Type: Expression profiling by high throughput sequencing.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [ChIP-seq]
GEO Series GSE155149. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Temporal and spatial niche partitioning in a retrotransposon community of the Drosophila melanogaster genome
GEO Series GSE274394. Drosophila melanogaster. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Temporal genomic analysis of melanoma rejection identifies regulators of tumor immune evasion [scc]
GEO Series GSE247058. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [PChi-C]
GEO Series GSE155153. Mus musculus. 16 samples. Type: Other.
Spatio-temporal evolution of the primary glioblastoma genome (aCGH)
GEO Series GSE63035. Homo sapiens. 36 samples. Type: Genome variation profiling by array.
Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons [RNA-Seq]
GEO Series GSE166012. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.