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50 results for “Theobroma”
Predicted Secreted Proteins for the Citrus Stem-End Rot Fungal Pathogen Lasiodiplodia theobromae CITRA15
<p>Lasiodiplodia theobromae (L. theobromae) belongs to a diverse genus of fungal pathogens associated with perennial tropical fruit plants worldwide. In citrus, L. theobromae causes stem-end rot (SER), a damaging postharvest disease that is aggravated when trees are also infected with the citrus greening bacterium, a Candidatus Liberibacter asiaticus. Due to the latent infection of L. theobromae during the preharvest stage, it is also difficult to control by chemical and physical treatment. We sequenced and assembled the first genome of isolate CITRA15 of L. theobromae obtained from citrus, providing a resource for future research on postharvest and preharvest disease management of citrus and other fruit crops and diagnostics. Here we want to share a set of i) 10,496 predicted coding gene sequences (cds) and ii) 10,496 predicted proteins and ii) 1,016 predicted secreted proteins using SignalP v2.0 and TMHMM v2.0.</p> <p> </p>
FIGURE 6. Eriomacrotergum flechtmanni n. gen. et n in Eriomacrotergum flechtmanni n. gen. n. sp. (Trombidiformes: Eriophyidae), a new eriophyoid mite from the cupuaçu tree, Theobroma grandiflorum, from northern Brazil
FIGURE 6. Eriomacrotergum flechtmanni n. gen. et n. sp. A. Propodosoma, female, enlarged dorsal view; anterior idiosoma is wax covered, preventing observation of annuli. Notation: a—wax, b—anterior portion of prodorsal shield; B. Prodorsal shield, enlarged dorsal view; C. External genitalia, female; D. Internal genitalia, female.
FIGURE 4. Eriomacrotergum flechtmanni n. gen. et n in Eriomacrotergum flechtmanni n. gen. n. sp. (Trombidiformes: Eriophyidae), a new eriophyoid mite from the cupuaçu tree, Theobroma grandiflorum, from northern Brazil
FIGURE 4. Eriomacrotergum flechtmanni n. gen. et n. sp., nymph. ND. Dorsal habitus; NV. Ventral habitus. Some setae from gnathosoma- pedipalp coxal seta (ep) and dorsal pedipalp genual seta (d)- and from legs- paraxial fastigial tarsal seta (ft') and anterolateral seta on coxisternum I (1b)- could not be clearly visualized, probably due to its reduced size.
FIGURE 3. Eriomacrotergum flechtmanni n. gen. et n in Eriomacrotergum flechtmanni n. gen. n. sp. (Trombidiformes: Eriophyidae), a new eriophyoid mite from the cupuaçu tree, Theobroma grandiflorum, from northern Brazil
FIGURE 3. Eriomacrotergum flechtmanni n. gen. et n. sp., female. LR. Lateral right habitus; LL. Lateral left habitus; L1. Leg I, antaxial view; L2. Leg II, antaxial view.
FIGURE 5. Eriomacrotergum flechtmanni n. gen. et n in Eriomacrotergum flechtmanni n. gen. n. sp. (Trombidiformes: Eriophyidae), a new eriophyoid mite from the cupuaçu tree, Theobroma grandiflorum, from northern Brazil
FIGURE 5. Eriomacrotergum flechtmanni n. gen. et n. sp. A. Dorsal habitus, female; B. Lateral habitus, female; C. Lateral habitus, nymph.
FIGURE 2. Eriomacrotergum flechtmanni n. gen. et n in Eriomacrotergum flechtmanni n. gen. n. sp. (Trombidiformes: Eriophyidae), a new eriophyoid mite from the cupuaçu tree, Theobroma grandiflorum, from northern Brazil
FIGURE 2. Eriomacrotergum flechtmanni n. gen. et n. sp. V. Ventral habitus, female; GF. External genitalia, female; GM. External genitalia, male; IGF. Internal genitalia, female; E. Ventral view of empodium, female (enlarged).
FIGURE 1. Eriomacrotergum flechtmanni n. gen. et n in Eriomacrotergum flechtmanni n. gen. n. sp. (Trombidiformes: Eriophyidae), a new eriophyoid mite from the cupuaçu tree, Theobroma grandiflorum, from northern Brazil
FIGURE 1. Eriomacrotergum flechtmanni n. gen. et n. sp., female dorsal habitus. D1. With wax; D2. Without wax.
FIGURE 4. Tetra theobromae n in Two new eriophyoid mite species (Trombidiformes: Eriophyoidea) from the cocoa tree, and a note on Shevtchenkella biseta (Nalepa)
FIGURE 4. Tetra theobromae n. sp. L. Lateral habitus, female; GM. External genitalia, male; GF. External genitalia, female; IGF. Internal genitalia, female; E. Dorsal view of empodium, female (enlarged); L1. Leg I, antaxial view, female; L2. Leg II, antaxial view, female.
FIGURE 3. Tetra theobromae n in Two new eriophyoid mite species (Trombidiformes: Eriophyoidea) from the cocoa tree, and a note on Shevtchenkella biseta (Nalepa)
FIGURE 3. Tetra theobromae n. sp. D. Dorsal habitus. V. Ventral habitus. PS. Prodorsal shield, female.
Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the Chocolate Tree
<p>Genomic structural variants (SVs) can play important roles in adaptation and speciation. Yet, the overall fitness effects of SVs are poorly understood, partly because accurate population-level identification of SVs requires multiple high-quality genome assemblies. Here, we use 31 chromosome-scale, haplotype-resolved genome assemblies of Theobroma cacao – an outcrossing, long-lived tree species that is the source of chocolate – to investigate the fitness consequences of SVs in natural populations. Among the 31 accessions, we find over 160 thousand SVs, which together cover eight times more of the genome than SNPs and short indels (125 Mb vs. 15 Mb). Our results indicate that a vast majority of these SVs are deleterious: they segregate at low frequencies and are depleted from functional regions of the genome. We show that SVs influence gene expression, which likely impairs gene function and contributes to the detrimental effects of SVs. We also provide empirical support for a theoretical prediction that SVs, particularly inversions, increase genetic load through the accumulation of deleterious nucleotide variants as a result of suppressed recombination.<br> Despite the overall detrimental effects, we identify individual SVs bearing signatures of local adaptation, several of which are associated with genes differentially expressed between populations. Genes involved in pathogen resistance are strongly enriched among these candidates, highlighting the contribution of SVs on this important local adaptation trait. Beyond revealing new empirical evidence for the evolutionary importance of SVs, these 31 de novo assemblies provide a valuable resource for genetic and breeding studies in T. cacao. </p>
Photodynamic inactivation of Lasiodiplodia theobromae: lighting the way towards an environmentally friendly phytosanitary treatment
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Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the Chocolate Tree
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Effect of Phytochemicals From Theobroma Cacao on Mental Energy
ClinicalTrials.gov study NCT01651793. IPD Sharing: YES. Countries: 1. Publications: 0.
Elevated temperature and carbon dioxide alters growth and leaf-chemical composition in two important neotropical crops, Coffee (Coffea arabica) and Cacao (Theobroma cacao)
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Identification of self- and pathogen-targeted miRNAs from resistant and susceptible Theobroma cacao variety to black pod disease
GEO Series GSE244955. Theobroma cacao. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes
GEO Series GSE131341. Lasiodiplodia theobromae. 6 samples. Type: Expression profiling by high throughput sequencing.
Two contrasting genotypes of Theobroma cacao differ in their transcriptional response and in accumulation of reactive oxygen species in response to treatment with salicylic acid
GEO Series GSE64022. Theobroma cacao. 32 samples. Type: Expression profiling by array.
Dual RNA-Sequencing of Vitis vinifera During Lasiodiplodia theobromae Infection Unveils Host-Pathogen Interactions
GEO Series GSE129109. Lasiodiplodia theobromae; Vitis vinifera. 24 samples. Type: Expression profiling by high throughput sequencing.
Theobroma subincanum Mart. from Colombia collected by A. Camargo, E. Álvarez, F. Toro #31
<p><strong>File Name</strong>: <span>TOLI-23234-ZAR-05-17.jpg</span></p> <p><strong>CÓDIGO FOTO</strong>: <span>TOLI-23234-ZAR-05-17-</span></p> <p><strong>Fotografía</strong>: <span>SI</span></p> <p><strong>Nº TOLI</strong>: <span>TOLI-23234</span></p> <p><strong>PARCELA</strong>: <span>ZAR-05</span></p> <p><strong>CÓDIGO</strong>: <span>17</span></p> <p><strong>Nº COLECTA</strong>: <span>31</span></p> <p><strong>NUEVOS COLECTORES</strong>: <span>Alejandro Camargo, Felipe Toro & Esteban Alvarez</span></p> <p><strong>COLECTORES</strong>: <span>A. Camargo, E. Álvarez, F. Toro</span></p> <p><strong>Nº MUESTRAS MONTADAS</strong>: <span>2</span></p> <p><strong>Homologación</strong>: <span>No homologado</span></p> <p><strong>Nueva fecha del evento </strong>: <span>30/11/2018.</span></p> <p><strong>Fecha del evento</strong>: <span>15/10/2006.</span></p> <p><strong>Proyecto </strong>: <span>Recursos Botánicos Disponibles en Línea (BRAVO) para la flora Colombiana</span></p> <p><strong>Hábitat</strong>: <span>Bosque húmedo tropical (bh-T)</span></p> <p><strong>Comentario del evento</strong>: <span>Bosque de tierra firme</span></p> <p><strong>Continente</strong>: <span>SA</span></p> <p><strong>Pais</strong>: <span>Colombia</span></p> <p><strong>Estado/Provincia</strong>: <span>Amazonas</span></p> <p><strong>Municipio</strong>: <span>Leticia</span></p> <p><strong>Localidad</strong>: <span>Resguardo Indígena Ticuna-Huitoto Km 6-11.</span></p> <p><strong>Elevación minima en metros</strong>: <span>200</span></p> <p><strong>Elevación maxima en metros</strong>: <span>300</span></p> <p><strong>Latitud</strong>: <span>-4.004</span></p> <p><strong>Longitud original</strong>: <span>-69.896</span></p> <p><strong>datum geodésico</strong>: <span>WGS 84</span></p> <p><strong>Latitud decimal</strong>: <span>-4.004</span></p> <p><strong>Longitud decimal</strong>: <span>-69.896</span></p> <p><strong>Identificado por</strong>: <span>Diego Suescún</span></p> <p><strong>Fecha de identificación</strong>: <span>15/02/2019.</span></p> <p><strong>Nombre cientifico</strong>: <span>Theobroma subincanum Mart.</span></p> <p><strong>Reino</strong>: <span>Plantae</span></p> <p><strong>Filo</strong>: <span>Magnoliophyta</span></p> <p><strong>Clase</strong>: <span>Equisetopsida</span></p> <p><strong>Orden</strong>: <span>Malvales</span></p> <p><strong>Familia nueva</strong>: <span>Malvaceae</span></p> <p><strong>Género nuevo</strong>: <span>Theobroma </span></p> <p><strong>especie nueva</strong>: <span>subincanum </span></p> <p><strong>Autoría del nombre científico</strong>: <span>Mart.</span></p> <p><strong></strong>: <span>Malvaceae</span></p> <p><strong>genero herbario</strong>: <span>Theobroma</span></p> <p><strong>especie herbario</strong>: <span>subincanum</span></p> <p><strong>Especie de herbario para TNRS</strong>: <span>Theobroma subincanum</span></p> <p><strong>Especie corregida herbario y desde TNRS</strong>: <span>Theobroma subincanum</span></p> <p><strong>Familia corregida desde TNRS</strong>: <span>Malvaceae</span></p> <p><strong></strong>: <span>2342</span></p>
Theobroma sp. from Colombia collected by Jaime Cabezas #1475
<p><strong>File Name</strong>: <span>TOLI-27868-AMA-01-B21-18.jpg</span></p> <p><strong>CÓDIGO FOTO</strong>: <span>TOLI-27868-AMA-01-B21-18</span></p> <p><strong>Nº TOLI</strong>: <span>TOLI-27868</span></p> <p><strong>PARCELA</strong>: <span>AMA-01</span></p> <p><strong>CÓDIGO</strong>: <span>B21-18</span></p> <p><strong>Nº COLECTA</strong>: <span>1475</span></p> <p><strong>COLECTORES</strong>: <span>Jaime Cabezas</span></p> <p><strong>Nº MUESTRAS MONTADAS</strong>: <span>1</span></p> <p><strong>Homologación</strong>: <span>Homologado</span></p> <p><strong>Fecha del evento</strong>: <span>27/11/2018.</span></p> <p><strong>Proyecto </strong>: <span>Recursos Botánicos Disponibles en Línea (BRAVO) para la flora colombiana</span></p> <p><strong>Continente</strong>: <span>SA</span></p> <p><strong>Pais</strong>: <span>Colombia</span></p> <p><strong>Estado/Provincia</strong>: <span>Chocó</span></p> <p><strong>Municipio</strong>: <span>Nuquí</span></p> <p><strong>Centro poblado / Cabecera municipal</strong>: <span>Reserva El Amargal</span></p> <p><strong>Elevación minima en metros</strong>: <span>50</span></p> <p><strong>Elevación maxima en metros</strong>: <span>50</span></p> <p><strong>Latitud</strong>: <span>5.578268</span></p> <p><strong>Longitud original</strong>: <span>-77.500026</span></p> <p><strong>datum geodésico</strong>: <span>WGS 84</span></p> <p><strong>Latitud decimal</strong>: <span>5.578268</span></p> <p><strong>Longitud decimal</strong>: <span>-77.500026</span></p> <p><strong>Identificado por</strong>: <span>L. Corrales</span></p> <p><strong>Fecha de identificación</strong>: <span>07/10/2019.</span></p> <p><strong>Familia antigua</strong>: <span>Malvaceae</span></p> <p><strong>Especie antigua</strong>: <span>cf. Apeiba sp.</span></p> <p><strong>Nombre cientifico</strong>: <span>Theobroma sp.</span></p> <p><strong>Reino</strong>: <span>Plantae</span></p> <p><strong>Filo</strong>: <span>Magnoliophyta</span></p> <p><strong>Clase</strong>: <span>Equisetopsida</span></p> <p><strong>Familia nueva</strong>: <span>Malvaceae</span></p> <p><strong>Género nuevo</strong>: <span>Theobroma</span></p> <p><strong>especie nueva</strong>: <span>sp.</span></p> <p><strong>genero herbario</strong>: <span>Theobroma</span></p> <p><strong>especie herbario</strong>: <span>sp.</span></p> <p><strong>Especie de herbario para TNRS</strong>: <span>Theobroma sp.</span></p> <p><strong>Especie corregida herbario y desde TNRS</strong>: <span>Theobroma indet</span></p> <p><strong>Familia corregida desde TNRS</strong>: <span>Malvaceae</span></p> <p><strong></strong>: <span>39</span></p>
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