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79
datasets available to search
ShareScore release 0.9.0
Dataset results
79 results for “Three-dimensional Genome”
H3K9ac-marked three-dimensional genome dynamics in rice under drought stress [RNA-Seq]
GEO Series GSE242459. Oryza sativa. 8 samples. Type: Expression profiling by high throughput sequencing.
Simultaneous single-cell three-dimensional genome and gene expression profiling Uncovers Dynamic Enhancer Connectivity Underlying Olfactory Receptor Choice [olfactory, single-cell RNA & Hi-C]
GEO Series GSE239969. Mus musculus. 822 samples. Type: Expression profiling by high throughput sequencing; Other.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (ChIP-seq)
GEO Series GSE185880. Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Histone H3K4 methylation regulation and three-dimensional aggregating distribution of a subset of genomic loci mediated by CHD3 homolog PKL in Arabidopsis [ChIP-Seq]
GEO Series GSE305651. Arabidopsis thaliana. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus. [ChIP-seq I]
GEO Series GSE147193. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice
GEO Series GSE240128. Mus musculus; Homo sapiens. 1743 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus. [RNA-seq]
GEO Series GSE147278. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
The three-dimensional genomic organization changes in terminal erythropoiesis reveal independence of chromatin condensation from nuclear condensation
GEO Series GSE185470. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure
GEO Series GSE120166. Homo sapiens. 4 samples. Type: Other.
Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression
GEO Series GSE131025. Mus musculus. 44 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations [Hi-C]
GEO Series GSE73782. Homo sapiens. 13 samples. Type: Other.
A three-dimensional map of the human genome at kilobase resolution reveals prinicples of chromatin looping
GEO Series GSE63525. Homo sapiens; Mus musculus. 200 samples. Type: Other.
The three-dimensional structure of the EBV genome plays a crucial role in regulating viral gene expression in EBVaGC
GEO Series GSE239995. Homo sapiens; human gammaherpesvirus 4. 29 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Three-dimensional genome structures of single mammalian sperm [GAM]
GEO Series GSE277016. Homo sapiens. 830 samples. Type: Other.
Histone H3K4 methylation regulation and three-dimensional aggregating distribution of a subset of genomic loci mediated by CHD3 homolog PKL in Arabidopsis [9-day-old seedlings, RNA-Seq]
GEO Series GSE305692. Arabidopsis thaliana. 24 samples. Type: Expression profiling by high throughput sequencing.
HNF1B induced three-dimensional genome analysis of patient-derived pancreas neoplasm organoids
GEO Series GSE202023. Homo sapiens. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Three-dimensional genome structures of single mammalian sperm [scHi-C]
GEO Series GSE276999. Homo sapiens; Mus musculus. 717 samples. Type: Other.
Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
GEO Series GSE50199. Plasmodium falciparum 3D7. 4 samples. Type: Other.
Three-dimensional genomic structure and cohesin occupancy correlates with transcriptional activity during spermatogenesis
GEO Series GSE132054. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus. [ChIP-seq II]
GEO Series GSE147279. Homo sapiens. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.