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192 results for “Trichoderma”
Context-dependent effects of Trichoderma seed inoculation on anthracnose disease and seed yield of bean (Phaseolus vulgaris): ambient conditions override cultivar-specific differences
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Data for: Endophyte genomes support greater metabolic gene cluster diversity compared with non-endophytes in Trichoderma
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FIGURE 1. Maximum likelihood tree reconstructed from tef1 in Trichoderma orarium (Hypocreales): a new species from Taiwan
FIGURE 1. Maximum likelihood tree reconstructed from tef1 sequences. The newly described species is displayed in blue bold. We indicated bootstrap values at the nodes based on 1000 replicates only exceeding 50%. Bar scale represents 0.01 substitutions per nucleotide position. T. inhamatum and T. bannaense were used as outgroup. The tef1 sequence accession numbers are provided in parentheses following the strain numbers. "T" denotes type strains.
FIGURE 2. Trichoderma orarium BCRC 18F0041. A–C. Colonies after 7 d in Trichoderma orarium (Hypocreales): a new species from Taiwan
FIGURE 2. Trichoderma orarium BCRC 18F0041. A–C. Colonies after 7 d at 25 ˚C; A. from above on PDA, B. from below on PDA, C. from above on SNA. D–L. Conidiophores, phialides, and conidia formed on SNA. M–N. Conidia. Scale bar = 10 µm. Photographs by Y.-H. Wei.
FIGURE 3. A in Trichoderma bombaxalis sp. nov., isolated from rhizosphere soils of Lycium barbarum
FIGURE 3. A. Cultures at 25 °C after 7 days on xylan medium. B. Following Congo red dyeing and decolorization on xylan medium. C. Cultures at 25 °C after 7 days on CMC-Na medium. D. Following Congo red dyeing and decolorization on CMC-Na medium.
FIGURE 1 in Trichoderma bombaxalis sp. nov., isolated from rhizosphere soils of Lycium barbarum
FIGURE 1. Phylogenetic tree based on maximum likelihood analysis of the combined ITS, RPB2 and TEF1-a dataset. Trichoderma protrudens and T. turrialbense are the outgroup taxa. Bootstrap values higher than 70% from RAxML (MPBP) (left) and Bayesian posterior probabilities greater than 0.95 (BIPP) (right) are given above the nodes. Asterisks indicate bootstrap values of less than 70% or Bayesian posterior probabilities lower than 0.95.T indicates ex-type isolates; isolates obtained in this study are in red.
Data for growth of marine Trichoderma sp. T2 in ambr250 to produce mucic acid
<p>These files contain data published in the journal article by Tamminen et al. 2022 ...</p> <p>There are 3 files. One contains online and offline data generated when cultivating Trichoderma sp. VTT D-221704 (formerly referred to as T2) or Trichoderma reesei D-161646 on glucose and D-galacturonate containing medium in fed-batch cultivation in the ambr250 robotic microbioreactor system. One file contains CO2 data from 2 L bioreactor cultivations published earlier by Vidgren et al., 2020 for which the CO2 data was not included. And one file contains similar CO2 data from a 1 L and a 250 L bioreactor cultivation, published earlier by Paasikallio et al. 2017, without the CO2 data being referred to.</p>
FIGURE 2. Trichoderma changiae A–C. Colonies after 7 d in Trichoderma changiae (Hypocreales), a new species isolated from a native orchid in Taiwan
FIGURE 2. Trichoderma changiae A–C. Colonies after 7 d at 25 °C, overview on: PDA (A), CMA (B), SNA (C). D–M. Conidiophores, phialides, and conidia. N–O. Clamydospores. P. Conidia. Sources: A–E, G–H, N–P from BCRC 24F0002; F, I–M from BCRC 24F0007. Scale bar = 10 µm. Photographs by Y.-H. Wei.
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 in Trichoderma changiae (Hypocreales), a new species isolated from a native orchid in Taiwan
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 sequences using Maximum-likelihood analysis. The new species Trichoderma changiae is highlighted in bold blue. Bootstrap values above 50% from RAxML-HPC2 on XSEDE (left) and posterior probabilities above 0.95 from Bayesian analysis (right) are displayed at the nodes. The scale bar represents 0.05 substitutions per nucleotide position. Trichoderma vulgatum was used as the outgroup. "T" denotes type strains.
FIGURE 3. Trichoderma clavaticapitatum a. Fresh stromata. b Dry stromata. c in New species and new Chinese record of Hypocreaceae from China
FIGURE 3. Trichoderma clavaticapitatum a. Fresh stromata. b Dry stromata. c. Close-up view of perithecia. d. Perithecia after rehydration. e. Median section through stroma. f. Section of cortical tissue. g. Subperithecial tissues in section. h. Perithecia in section. i–m. Asci with part-ascospores. Scale bars: a, b = 1 cm, c = 0.5 mm, d = 1 mm, e–h = 50 μm, i–m = 10 μm.
FIGURE 7 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 7. Trichoderma tenue (HMAS 273785). a–c. Cultures at 25 C (a. CMD, 9 d; b. PDA, 12 d; c. SNA, 12 d). d. Conidiation tufts (PDA, 12 d). e–j. Conidiophores (CMD, 6 d). k. Conidia (CMD, 6 d). Scale bars: a–c = 20 mm; d = 1 mm; e–j = 20 μm; k = 10 μm.
FIGURE 5 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 5. Trichoderma perviride (HMAS 273786). a–c. Cultures after 13 d at 25 C (a. CMD, b. PDA, c. SNA). d–i. Conidiophores (CMD, 4 d). j. Conidia (CMD, 4 d). Scale bars: a–c = 20 mm; d–i = 20 μm; j = 10 μm.
FIGURE 8 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 8. Trichoderma viridulum (HMAS 273865). a−c. Cultures after 7 d at 25 C (a. CMD; b. PDA; c. SNA). d–i. Conidiophores and phialides (SNA, 7 d). j. Conidia (SNA, 7 d). Scale bars: a–c = 20 mm; d, e, i = 20 μm; f–h, j = 10 μm.
FIGURE 2 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 2. Trichoderma angustum (HMAS 273784). a−c. Cultures after 14 d at 25 C (a. CMD; b. PDA; c. SNA). d. Conidiation pustules (SNA, 16 d). e–j. Conidiophores and phialides (e–h. SNA, 14 d; i, j. CMD, 9 d); k. Chlamydospores (SNA, 14 d); l. Conidia (SNA, 14 d). Scale bars: a–c = 20 mm; d = 400 μm; e–k = 20 μm; l = 5 μm.
FIGURE 1 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 1. Maximum parsimony phylogram reconstructed from the combined sequences of RPB2 and TEF1-α. MPBP (left) above 50% and BIPP (right) above 90% are indicated at the nodes. New species proposed are indicated in boldface. TreeBASE no. S19229.
FIGURE 6 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 6. Trichoderma purpureum (HMAS 273787). a–e. Stromata on nature substrate. f. Rehydrated mature stroma; g. Rehydrated stroma in 3% KOH. h. Longitudinal section of a stroma. i. Perithecium in section. j. Cortical and subcortical tissue in section. k. Subperithecial tissue in section. l. Stroma base in section. m. Ascus with part-ascospores. Scale bars: a = 2 mm; b, c = 1 mm; d–g = 0.4 mm; h = 200 μm; i = 50 μm; j–l = 20 μm; m = 5 μm.
FIGURE 4 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 4. Trichoderma globoides (HMAS 248747). a–c. Cultures after 13 d at 25 C (a. CMD, b. PDA, c. SNA). d–k. Conidiophores (SNA, 5 d). l. Conidia (CMD, 5 d). Scale bars: a–c = 20 mm; d–f, j, k = 20 μm; g–i, l= 10 μm.
FIGURE 3 in Seven new species of Trichoderma (Hypocreales) in the Harzianum and Strictipile clades
FIGURE 3. Trichoderma crystalligenum (HMAS 273783). a–e. Stromata on nature substrate. f. Rehydrated mature stroma; g. Rehydrated stroma in 3% KOH. h. Perithecium in section. i. Cortical and subcortical tissue in section. j. Subperithecial tissue in section. k. Stroma base in section. l, m. Portion of ascus with part-ascospores. n–p. Cultures at 25 C (n. CMD, 25 d; o. PDA, 14 d; p. SNA, 17 d). q–u. Conidiophores (SNA, 20 d). v. Crystals in agar (CMD, 30 d). w: Chlamydospores (SNA, 20 d); x. Conidia (SNA, 20 d). Scale bars: a, d, f, g = 400 μm; b = 1 mm; c = 500 μm; e = 200 μm; h = 50 μm; i–k, w = 20 μm; l, m, s–u = 5 μm; n–p = 20 mm; q, r, x = 10 μm; v = 100 μm.
FIGURE 8 in Seven soil-inhabiting new species of the genus Trichoderma in the Viride clade
FIGURE 8. Trichoderma vulgatum (HMAS 248796). A–C. Cultures after 7 d at 25 °C (A. CMD; B. PDA; C. SNA); D–K. Conidiophores and phialides (PDA, 3 d); L–N. Conidia (PDA, 3 d). Scale bars: A–C = 20 mm; D–E = 20 μm; F–I = 10 μm; J–N = 5 μm.
FIGURE 4 in Seven soil-inhabiting new species of the genus Trichoderma in the Viride clade
FIGURE 4. Trichoderma bifurcatum (HMAS 248795). A–C. Cultures at 25 °C (A. CMD, 25 d; B. PDA, 7 d; C. SNA, 20 d); D–E. Conidiation pustules (CMD, 25 d); F–N. Conidiophores and phialides (PDA, 5 d); O–Q. Conidia (CMD, 25 d). Scale bars: A–C = 20 mm; D–E = 200 μm; F = 20 μm; G–I = 10 μm; J–Q = 5 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.