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29 results for “Usnea”
Figure 5 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Figure 5 Sample populations of Usnea subfloridana and explanatory variables mean annual air temperature ('Temp') and geographical longitude of populations ('Long') in the bi-plot of the redundancy analysis (RDA) of the first and second axes. The shape of symbols indicates the geographical location of studied populations (square – south-eastern region of mainland, circle - western island and diamond – north-eastern region) and the size of symbols indicates the number of different alleles found in the studied populations.
Supplementary material 2 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093
Overview of RADseq results after individual steps of RAD analyses :
Figure 3 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093
Figure 3 Genomic variation by non-parametric DAPC. ADAPC plot of the densities of U.antarctica (blue) and U.aurantiacoatra (green) on the first retained discriminant function B Bar plot of group membership probabilities.
Figure 2 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093
Figure 2 Pairwise Gst, G'st and D distribution. Pairwise values of Nei's Gst (green), Hedrick's G'st (blue) and Jost's D (yellow) are plotted by their frequency.
Figure 1 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093
Figure 1 Phylogenetic tree inferred from the U.antarctica and U.aurantiacoatraRADseq data. The clades of each species are highlighted by brackets. Bootstrap values are indicated at the branches. The unit of branch length is substitutions per site. Note that branches leading to both major clades were abbreviated by 0.4 substitutions per site.
Supplementary material 1 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093
Origin of samples used for this study :
Figure 4 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093
Figure 4 Clustered fineRADstructure co-ancestry matrix. A Full dataset including U.antarctica collected on the Antarctic Peninsula in addition to U.antarctica and U.aurantiacoatra collected on King George Island and Elephant Island B Reduced dataset with all U.antarctica and U.aurantiacoatra collected on King George Island and Elephant Island. Two major clades are corresponding to the two species U.antarctica (top-left) and U.aurantiacoatra (bottom-right). The top and left trees were calculated from the co-ancestry matrix to sort the individuals by their population structure. The matrix is diagonally split into the top-right half showing raw data and the bottom-left half displaying aggregated data.
Supplementary material 3 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093
Correlation of RADseq results after individual steps of RAD analyses :
Fig. 5 a 95 in Using haplotype networks, estimation of gene flow and phenotypic characters to understand species delimitation in fungi of a predominantly Antarctic Usnea group (Ascomycota, Parmeliaceae)
Fig. 5 a 95% probability haplotype network for the U. sphacelata group based on a combined dataset of ribosomal IGS and ITS and protein-coding RPB1 sequences. The 3-step nesting level is shown. Haplotypes are represented by colored circles according to the sample localities. The circle size is proportional to the number of sequences sharing a haplotype, except for haplotype H5 comprising too many
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