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589 results for “Vascular Plants”
TreeGOER 2024 Expansion: Expansion with additional tree and bamboo species identified via the World Checklist of Vascular Plants
<p>The database provides globally observed environmental ranges for an additional list of species not included in the <a href="https://zenodo.org/records/7922927"><strong>TreeGOER database</strong></a>. Candidate species were identified via the <a href="https://powo.science.kew.org/about-wcvp"><strong>World Checklist of Vascular Plants</strong> (WCVP) version 11</a>. Many of the additional species were hybrids or bamboo species that were excluded from <strong>GlobalTreeSearch</strong>. Taxonomical details given in a separate file correspond to information provided by the WCVP, as well as information on the life form of each species. Field <em>n</em> in the taxonomical data sets shows the number of records used to provide range information for the expansion of TreeGOER.</p> <p>Tree species were filtered from the WCVP by selecting species records with an empty <em>acceptedNameUsageID</em> field (a field that refers to a current name if not empty) and afterwards filtering for records where the <em>lifeform_description</em> field contained one from the categories of <u>tree</u> (3580 candidate species for the TreeGOER 2024 expansion), shrub or <u>tree</u> (3129), scrambling shrub or <u>tree</u> (138), climbing shrub or <u>tree</u> (58), succulent shrub or <u>tree</u> (40), succulent <u>tree</u> (37), scrambling <u>tree</u> (32), liana or <u>tree</u> (6), , tuberous <u>tree (3)</u>, tuberous shrub or <u>tree</u> (3), semisucculent <u>tree</u> (2), or semisucculent shrub or <u>tree</u> (3)</p> <p>Species that could <strong><u>not</u></strong> be matched with the <a href="https://tools.bgci.org/global_tree_search.php">GlobalTreeSearch database (version 1.7)</a> were candidates for the expansion of species documented in TreeGOER. Standardization to the WCVP was achieved via the <a href="https://bsapubs.onlinelibrary.wiley.com/doi/full/10.1002/aps3.11388">WorldFlora R package</a>, using the same scripts available in this Rpub: . <a href="https://rpubs.com/Roeland-KINDT/1134151">https://rpubs.com/Roeland-KINDT/1134151</a>.</p> <p>Occurrence data were obtained from the <strong>Global Biodiversity Information Facility</strong> via the following downloads. Downloads were facilitated by prior identification of the <strong>GBIF usageKey</strong> via the <a href="https://docs.ropensci.org/rgbif/reference/name_backbone.html">rgbif::name_backbone</a> function, afterwards filtering records that matched with a current species name in the GBIF backbone taxonomy, using package <a href="https://cran.r-project.org/package=rgbif">rgbif</a> version 3.7-9.</p> <ul> <li>batch 1: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.upqqve">https://doi.org/10.15468/dl.upqqve</a></li> <li>batch 2: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.fhqdpg">https://doi.org/10.15468/dl.fhqdpg</a></li> <li>batch 3: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.w3k3n7">https://doi.org/10.15468/dl.w3k3n7</a></li> <li>batch 4: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.xqp7qg">https://doi.org/10.15468/dl.xqp7qg</a></li> <li>batch 5: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.t92qsg">https://doi.org/10.15468/dl.t92qsg</a></li> <li>batch 6: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.7ug5z5">https://doi.org/10.15468/dl.7ug5z5</a></li> <li>batch 7: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.8tp9p8">https://doi.org/10.15468/dl.8tp9p8</a></li> <li>batch 8: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.ewdj7m">https://doi.org/10.15468/dl.ewdj7m</a></li> <li>batch 9: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.gccja8">https://doi.org/10.15468/dl.gccja8</a></li> <li>batch 10: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.jg7gzs">https://doi.org/10.15468/dl.jg7gzs</a></li> <li>batch 11: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.6gww7b">https://doi.org/10.15468/dl.6gww7b</a></li> <li>batch 12: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.9h8axh">https://doi.org/10.15468/dl.9h8axh</a></li> <li>batch 13: GBIF.org (27 March 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.mswf23">https://doi.org/10.15468/dl.mswf23</a></li> </ul> <p> </p> <p>For bamboo species, identified by a similar process as documented above but now filtering in the WCVP for the lifeform of <u>bamboo</u>, occurrence data were obtained from the Global Biodiversity Information Facility via the following downloads:</p> <ul> <li>batch 1: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.6xt5qu">https://doi.org/10.15468/dl.6xt5qu</a></li> <li>batch 2: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.tdmva4">https://doi.org/10.15468/dl.tdmva4</a></li> <li>batch 3: GBIF.org (08 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.u2gpxv">https://doi.org/10.15468/dl.u2gpxv</a></li> </ul> <p> </p> <p>After downloading the GBIF occurrence data sets, the same procedures were used to calculate the globally observed environmental ranges as in the TreeGOER database which have been described by Kindt, R. (2023). <strong>TreeGOER: A database with globally observed environmental ranges for 48,129 tree species</strong>. Global Change Biology, 00, 1–16. <a href="https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914">https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914</a>. </p> <p> </p> <p>A new check for the availability of species observations was made also for species listed in the <a href="https://worldagroforestry.org/output/globalusefulnativetrees"><strong>GlobalUsefulNativeTrees database</strong></a>, but not in TreeGOER. Taxonomical details for these species are given as a 'set 2' in the database.</p> <p>Downloads from the Global Biodiversity Information Facility were:</p> <ul> <li>batch 1: GBIF.org (04 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.ajwegx">https://doi.org/10.15468/dl.ajwegx</a></li> <li>batch 2: GBIF.org (04 April 2024) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.hxk5be">https://doi.org/10.15468/dl.hxk5be</a></li> </ul> <p> </p> <p>Version 2024.06 included a new field in the Tmo10 zones files of 'A18' that flags 717 species that occur in zones where all months have a mininum temperature of 18 degrees or above, using similar methods as the 2024.06 version of TreeGOER.</p> <p> </p> <p>The development of the <strong>TreeGOER 2024 Expansion</strong> was supported by the <strong>Darwin Initiative</strong> to project DAREX001 of <em>Developing a Global Biodiversity Standard certification for tree-planting and restoration</em>, by <strong>Norway’s International Climate and Forest Initiative through the Royal Norwegian Embassy in Ethiopia</strong> to the <em>Provision of Adequate Tree Seed Portfolio</em> project in Ethiopia, by the <strong>Green Climate Fund</strong> through the IUCN-led <em>Transforming the Eastern Province of Rwanda through Adaptation</em> project and through the <em>Readiness proposal on Climate Appropriate Portfolios of Tree Diversity for Burkina Faso</em>, by the <strong>Bezos Earth Fund</strong> to the <em>Bezos Quality Tree Seed for Africa in Kenya and Rwanda</em> project and by the <strong>German International Climate Initiative (IKI)</strong> to the regional tree seed programme on <em>The Right Tree for the Right Place for the Right Purpose in Africa</em>. When using <strong>TreeGOER 2024 Expansion</strong> in your work, cite the publication (Kindt <a href="https://onlinelibrary.wiley.com/doi/10.1111/gcb.16914">2023</a>) as well as this repository using the DOI (<a href="../doi/10.5281/zenodo.11208040">https://zenodo.org/doi/10.5281/zenodo.11208040</a>).</p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p>
Fig. 2 in The Flora Of Vascular Plants In The Nature Reserve "Pašuliene Forest"
Fig. 2. Territory of the nature reserve "Pašuliene Forest" and vicinity in two-verst map published in 1833, issued in Russia (left), and in tophographical map of 1925, issued in Latvia (right).
Fig. 2 - A in Report 2020 on plant biodiversity in Italy: native and alien vascular flora
Fig. 2 - A) Poa magellensis F.Conti & Bartolucci. Endemic to Italy, described in 2020. / Specie endemica italiana descritta nel 2020. (Photo: / Foto: Fabrizio Bartolucci). B) Gymnospermium scipetarum Paparisto & Qosja ex E.Mayer & Pulević subsp. eddae Rosati, Farris, Fascetti & Selvi. Endemic to Italy, described in 2018. / Sottospecie endemica italiana descritta nel 2018. (Photo: / Foto: Leonardo Rosati).
Fig. 1 in Report 2020 on plant biodiversity in Italy: native and alien vascular flora
Fig. 1 - Hieracium tolstoii Fen. & Zahn. Endemic to Italy, recognized as extinct in 2019. / Specie endemica italiana dichiarata estinta nel 2019 (FI051948; Scan / Scansione: Erbario dell'Università di Firenze).
Linked collectors and determiners for: Checklist of vascular plants of the projected landscape reserve "Lesovyi Kanyon" (Kherson region, Ukraine).
Natural history specimen data linked to collectors and determiners held within, "Checklist of vascular plants of the projected landscape reserve "Lesovyi Kanyon" (Kherson region, Ukraine)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2">https://bionomia.net/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2">https://gbif.org/dataset/e67236c3-799a-47dd-b3ed-ccd8c231f0d2</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Herbarium UGDA - Vascular Plants Collection.
Natural history specimen data linked to collectors and determiners held within, "Herbarium UGDA - Vascular Plants Collection". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="http://bionomia.net/dataset/ecafe5de-e81e-4766-848d-326fafd87876">https://bionomia.net/dataset/ecafe5de-e81e-4766-848d-326fafd87876</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/ecafe5de-e81e-4766-848d-326fafd87876">https://gbif.org/dataset/ecafe5de-e81e-4766-848d-326fafd87876</a>. Formatted as a Frictionless Data package.
Fig. 4 in Vascular plant diversity of the Gogunsan Archipelago in the Korean Peninsula
Fig. 4. Dendrograms showing the degree of Sørensen similarity based on vascular flora data of the Gogunsan Archipelago.
Fig. 5 in Vascular plant diversity of the Gogunsan Archipelago in the Korean Peninsula
Fig. 5. Dendrograms showing the degree of Sørensen similarity based on native flora data (except invasive alien plants, ruderal plants) of the Gogunsan Archipelago.
Fig. 1 - Anthyllis apennina F in Report 2021 on plant biodiversity in Italy: native and alien vascular flora
Fig. 1 - Anthyllis apennina F.Conti & Bartolucci, an Italian endemic described in 2021 (Monte Tricella, Abruzzo, Italy. Photo: Fabio Conti). Anthyllis apennina F.Conti & Bartolucci, specie endemica italiana descritta nel 2021 (Monte Tricella, Abruzzo, Italia. Foto: Fabio Conti).
Fig. 3 in Report 2021 on plant biodiversity in Italy: native and alien vascular flora
Fig. 3 - Ophrys japigiae Turco, D'Emerico, Dura, Gennaio & Medagli, an Italian endemic described in 2021 (Ugento, Puglia, Italy. Photo: Francesco Chetta). / Ophrys japigiae Turco, D'Emerico, Dura, Gennaio & Medagli, specie endemica italiana descritta nel 2021 (Ugento, Puglia, Italy. Foto: Francesco Chetta).
Fig. 2 - A in Report 2021 on plant biodiversity in Italy: native and alien vascular flora
Fig. 2 - A) Odontarrhena bertolonii (Desv.) Jord. & Fourr. subsp. cesalpinoana Selvi, an Italian endemic described in 2021 (Monte Petroso, Toscana, Italy. Photo: Federico Selvi); B) Centaurea phalacrica Brullo, Cambria, Crisafulli, Tavilla & Sciandr., an Italian endemic described in 2021 (Capo Rasocolmo, Sicilia, Italy. Photo: Gianmarco Tavilla). / Odontarrhena bertolonii (Desv.) Jord. & Fourr. subsp. cesalpinoana Selvi, sottospecie endemica italiana descritta nel 2021 (Monte Petroso, Toscana, Italia. Foto: Federico Selvi); B. Centaurea phalacrica Brullo, Cambria, Crisafulli, Tavilla & Sciandr., specie endemica italiana descritta nel 2021 (Capo Rasocolmo, Sicilia, Italia. Foto: Gianmarco Tavilla).
D-PLACE dataset derived from Kreft and Jetz 2007 'Global patterns and determinants of vascular plant diversity'
<p>Cite the source of the dataset as:</p> <blockquote> <p>Kreft H, Jetz W. Global patterns and determinants of vascular plant diversity. Proc Natl Acad Sci. 2007;104: 5925–5930.</p> </blockquote>
Linked collectors and determiners for: Vascular plants from European Russia in the CSBG SB RAS Digital herbarium.
Natural history specimen data linked to collectors and determiners held within, "Vascular plants from European Russia in the CSBG SB RAS Digital herbarium". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/85f9137e-8aec-4e0b-9ed6-0af4dbe491e8">https://bionomia.net/dataset/85f9137e-8aec-4e0b-9ed6-0af4dbe491e8</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/85f9137e-8aec-4e0b-9ed6-0af4dbe491e8">https://gbif.org/dataset/85f9137e-8aec-4e0b-9ed6-0af4dbe491e8</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Universidad de Navarra, Herbarium: PAMP-Vascular Plants.
Natural history specimen data linked to collectors and determiners held within, "Universidad de Navarra, Herbarium: PAMP-Vascular Plants". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/d7c78847-d662-44c4-a550-5a812dbcc71b">https://bionomia.net/dataset/d7c78847-d662-44c4-a550-5a812dbcc71b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/d7c78847-d662-44c4-a550-5a812dbcc71b">https://gbif.org/dataset/d7c78847-d662-44c4-a550-5a812dbcc71b</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: TB Lee Herbarium Vascular Plant Collection Phase II.
Natural history specimen data linked to collectors and determiners held within, "TB Lee Herbarium Vascular Plant Collection Phase II". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/6258c1c8-b27e-4497-8079-ac084029b81b">https://bionomia.net/dataset/6258c1c8-b27e-4497-8079-ac084029b81b</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/6258c1c8-b27e-4497-8079-ac084029b81b">https://gbif.org/dataset/6258c1c8-b27e-4497-8079-ac084029b81b</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: TUL Herbarium: Tula Oblast collections of vascular plants.
Natural history specimen data linked to collectors and determiners held within, "TUL Herbarium: Tula Oblast collections of vascular plants". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/5788c83a-0e0a-42c1-8fcd-3b27ce7a672a">https://bionomia.net/dataset/5788c83a-0e0a-42c1-8fcd-3b27ce7a672a</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/5788c83a-0e0a-42c1-8fcd-3b27ce7a672a">https://gbif.org/dataset/5788c83a-0e0a-42c1-8fcd-3b27ce7a672a</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: NHMO DNA Bank Vascular plants collection.
Natural history specimen data linked to collectors and determiners held within, "NHMO DNA Bank Vascular plants collection". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e73369d9-fa93-47f9-932c-e101b6dd8507">https://bionomia.net/dataset/e73369d9-fa93-47f9-932c-e101b6dd8507</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e73369d9-fa93-47f9-932c-e101b6dd8507">https://gbif.org/dataset/e73369d9-fa93-47f9-932c-e101b6dd8507</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Typotheca of the higher vascular plants stored in M.G. Popov Herbarium (NSK) at the Central Siberian botanical garden SB RAS.
Natural history specimen data linked to collectors and determiners held within, "Typotheca of the higher vascular plants stored in M.G. Popov Herbarium (NSK) at the Central Siberian botanical garden SB RAS". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e7a2f416-fea5-41bb-8f17-5217fcaa74d7">https://bionomia.net/dataset/e7a2f416-fea5-41bb-8f17-5217fcaa74d7</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e7a2f416-fea5-41bb-8f17-5217fcaa74d7">https://gbif.org/dataset/e7a2f416-fea5-41bb-8f17-5217fcaa74d7</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Vascular Plant Herbarium, Oslo (O) UiO.
Natural history specimen data linked to collectors and determiners held within, "Vascular Plant Herbarium, Oslo (O) UiO". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e45c7d91-81c6-4455-86e3-2965a5739b1f">https://bionomia.net/dataset/e45c7d91-81c6-4455-86e3-2965a5739b1f</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e45c7d91-81c6-4455-86e3-2965a5739b1f">https://gbif.org/dataset/e45c7d91-81c6-4455-86e3-2965a5739b1f</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: UCR - University of California, Riverside Herbarium - Vascular Plants.
Natural history specimen data linked to collectors and determiners held within, "UCR - University of California, Riverside Herbarium - Vascular Plants". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e523cf2d-4fc2-48d8-aa75-80ecbc90b3f5">https://bionomia.net/dataset/e523cf2d-4fc2-48d8-aa75-80ecbc90b3f5</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e523cf2d-4fc2-48d8-aa75-80ecbc90b3f5">https://gbif.org/dataset/e523cf2d-4fc2-48d8-aa75-80ecbc90b3f5</a>. Formatted as a Frictionless Data package.
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