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31 results for “Wikidata Subset”
Generated Wikidata Subset for geneWiki based on dump: GeneWiki_wikidata-20220630
<p>Source file: GeneWiki_wikidata-20220630-all.ttl</p>
Generated Wikidata Subset for geneWiki based on dump: wikidata-20150601-all
<p>Source file: wikidata-20150601-all.ttl</p>
Generated Wikidata Subset for geneWiki based on dump: GeneWiki_wikidata-20210531-all
<p>Source file: GeneWiki_wikidata-20210531-all.ttl.gz</p>
Generated Wikidata Subset for geneWiki based on dump: GeneWiki_wikidata-20180115-all
<p>Source file: GeneWiki_wikidata-20180115-all.ttl.gz</p>
Generated Wikidata Subset for geneWiki based on dump: GeneWiki_wikidata-20190121-all
<p>Source file: GeneWiki_wikidata-20190121-all.ttl.gz</p>
Generated Wikidata Subset for geneWiki based on dump: GeneWiki_wikidata-20170821-all
<p>Source file: GeneWiki_wikidata-20170821-all.ttl.gz</p>
Generated Wikidata Subset for geneWiki based on dump: GeneWiki_wikidata-20201102-all
<p>Source file: GeneWiki_wikidata-20201102-all.ttl.gz</p>
Generated Wikidata Subset for geneWiki based on dump: GeneWiki_wikidata-20160613-all
<p>Source file: GeneWiki_wikidata-20160613-all.ttl.gz</p>
Wikidata subset with revision history information [JSON]
<p>This dataset consists the complete revision history of every instance of the 100 most important classes in Wikidata. It contains 9.3 million classes and around 450 million revisions made to those classes. This dataset was exported from a MongoDB database. After decompressing the files, the resulting JSON files can be imported into MongoDB using the following commands:</p> <pre><code>mongoimport --db=db_name --collection=wd_entities --file=wd_entities.json mongoimport --db=db_name --collection=wd_revisions --file=wd_revisions.json </code></pre> <p>Make sure that <em>db_name</em> is replaced by the database where this data will be imported.</p> <p>Documents within the <em>wd_entities</em> collection have the following schema:</p> <ul> <li><strong>id</strong>: Internal id of the entity used by Wikidata (e.g. 8195238).</li> <li><strong>entity_id</strong>: Public id of the entity in Wikidata (e.g. 'Q42')</li> <li><strong>class_ids</strong>: List of classes that the entity belongs to (e.g. ['Q5', 'Q100'])</li> <li><strong>entity_json</strong>: JSON contents of the entity, following Wikidata's JSON data model (https://doc.wikimedia.org/Wikibase/master/php/md_docs_topics_json.html).</li> </ul> <p>Documents within the <em>wd_revisions</em> collection have the following schema:</p> <ul> <li><strong>id</strong>: Identifier of the revision (e.g. 15921539)</li> <li><strong>entity_id</strong>: Public id of the entity in Wikidata affected by this revision (e.g. 'Q42')</li> <li><strong>class_ids</strong>: List of classes that the entity affected by this revision belongs to (e.g. ['Q5', 'Q100'])</li> <li><strong>parent_id</strong>: Identifier of the previous revision to this one, if it exists (e.g. 15921214)</li> <li><strong>timestamp</strong>: Date where the revision was made, following the ISO 8601 format (e.g. +2019-05-27T09:31:10Z)</li> <li><strong>username</strong>: Username of the user that made the revision.</li> <li><strong>comment</strong>: Comments made by the user in the revision, if any.</li> <li><strong>entity_diff</strong>: List of operations made in this revision, following the JSON Patch format.</li> </ul>
Wikidata subset on items depicting a taxon name
<p>Subset of Wikidata obtained using this Shape Expression: https://github.com/kg-subsetting/biohackathon2022/blob/main/workflows/wdsub/taxonlight.shex</p> <p>And the wdsub tool version 0.0.23: https://github.com/weso/wdsub</p> <p>The input dump is: wikidata-20220103-all</p> <p> </p>
Datalog subsetting input files (Wikidata NTriple subsets)
<p>Two RDF susbets of Wikidata in NTriple format for being used in Souffle engine.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.