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58 results for “agent based model”
Wildlife response to disturbances in agent-based models: synthesis on current development and challenges (Systematic Review)
<p>This dataset was obtained from a systematic screening of 124 articles presenting agent-based models of wildlife response to disturbances. It is part of a manuscript for submission to the journal Methods in Ecology and Evolution. The manuscript is entitled: Wildlife response to disturbances in agent-based models: synthesis on current development and challenges.</p>
Data from: Agent-based versus correlative models of species distributions: Evaluation of predictive performance with real and simulated data
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Simulated results from an agent-based model examining inequality and innovation in social networks
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Data from: Rapid evolution of prehistoric dogs from wolves by natural and sexual selection emerges from an agent-based model
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When should bees be flower constant? An agent-based model highlights the importance of social information and foraging conditions
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Falls Lake Agent-based Model Critical Transitions Dataset
<p>Data files are provided here. They are output from the Falls Lake ABM at <a href="https://github.com/maskarb/FallsLakeABM">https://github.com/maskarb/FallsLakeABM</a>. Four management scenarios are simulated for 16 shifting climate scenarios. Management Scenario 1 is no management. Management Scenario 2 is retrofitting. Management Scenario 3 is retrofitting with light drought restrictions. Management Scenario 4 is retrofitting with severe drought restrictions. The 16 shifting climate scenarios correspond to shifting factors equal to 0.25 - 1.0, increasing in 0.05 increments. For each of the 64 settings (16 climate settings X 4 management scenarios), 100 simulations were run to capture stochasticity.</p> <p>Files in Results-mgmt-x folders show the agent-based modeling results for each simulation. Data files (for example, res-mgmt-1-s-0.25-5.txt) describe the storage and deficit for each of the simulations in million cubic meters, reported at a monthly timestep. Columns 5-9, inflow, storage, outflow, totalWaterSupply, waterSupply, report monthly flows. </p> <p>Files in EWS-mgmt-X-window-25 shows the value of each early warning signals indicator calculated for log-transformed reservoir storage for each of 100 simulations, for management strategies 1-4 and shifting factors. Winsize is set at 25%, which means that EWS indicators are not calculated until time step 300, or 25% of 1200 time steps.</p>
Data from: Modelling mobile agent-based ecosystem services using kernel weighted predictors
1. Agriculture benefits from ecosystem services provided by mobile agents, such as biological pest control by natural enemies and pollination by bees. However, methods that can generate spatially explicit predictions and maps of these ecosystem services based on empirical data are still scarce. 2. Here we propose a generic statistical model to derive kernel functions to characterize the spatial distribution of ecosystem services provided by mobile agents. The model is similar in spirit to a generalized linear model, and uses data of landscape composition and ecosystem services assessed at target sites to estimate parameters of the kernel. The approach is tested in a simulation study and illustrated by an empirical case study on parasitism rates of the diamondback moth Plutella xylostella. 3. The simulation study shows that the scale parameter of the exponential power kernel can be estimated with limited bias, whereas estimation of the shape parameter is difficult. For the case study the model provides biologically relevant estimates for the kernel associated with parasitism of Plutella xylostella. These estimates can be used to generate ecosystem service maps for existing or planned landscapes. The case study reveals that predictions can be sensitive to the parameter values for the width and shape of the kernel, and to the link function used in the statistical model. 4. In the last two decades numerous empirical studies assessed ecosystem services at target sites and related these to the surrounding landscape. Our method can take advantage of these data by estimating underlying kernels that can be used to map the spatial distribution of ecosystem services. However, empirical data that can discriminate between alternative kernel shapes remain critical.
A comparison of model-based and model-free agents in solving semi-automatically generated PPDDL problems - Plots
<p>A collection of all plots generated for deriving the conclusions seen in "<span><span>A comparison of model-based and model-free agents in solving semi-automatically generated PPDDL problems</span></span>".</p>
Simulation results of the agent-based model of urban insurgence with the effect of gathering sites and Koopman mode analysis
<p>The data set contains the simulation results of the agent-based model of urban insurgence with the effect of gathering sites and Koopman mode analysis. Some details on the agent-based model (without gathering sites) can be found in [Maria Fonoberova, Vladimir A. Fonoberov, Igor Mezic, Jadranka Mezic and P. Jeffrey Brantingham, Nonlinear Dynamics of Crime and Violence in Urban Settings, Journal of Artificial Societies and Social Simulation, 15(1), 2, http://jasss.soc.surrey.ac.uk/15/1/2.html, DOI: 10.18564/jasss.1921].</p> <p>Files in folder "0bar" are related to the case with 0 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "1bar" are related to the case with 1 preferential gathering site.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and average distance from the preferential gathering site. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "2bars" are related to the case with 2 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars2.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "3bars" are related to the case with 3 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars3.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "4bars" are related to the case with 4 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars4.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "5bars" are related to the case with 5 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars5.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "10bars" are related to the case with 10 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars10.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "20bars" are related to the case with 20 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars20.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "30bars" are related to the case with 30 preferential gathering sites.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars30.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "prob25" are related to the case with 5 preferential gathering sites and 25% probability of agents moving towards them.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars5_prob0.25.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "prob50" are related to the case with 5 preferential gathering sites and 50% probability of agents moving towards them.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars5_prob0.50.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "prob75" are related to the case with 5 preferential gathering sites and 75% probability of agents moving towards them.</p> <p>Each file with name starting with Actives has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens. The last value is not used. These files are provided for lattice sizes from 100x100 to 600x600 and for different random seeds.</p> <p>Each file with name starting with Day for each non-intimidated agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship, total number of days of being active and -1. Last two values are not used. If an agent is LEO, then last four values are -1. These files are provided for each time step of the simulation, each lattice size and the corresponding random seed used. For example, file "Day_10000_100_111_bars5_prob0.75.txt" provides information on the lattice situation at time step 10000 with lattice size 100 and random seed 111.</p> <p>Files in folder "KMD" have detailed information for the case with 3 preferetial gathering sites and lattice size 200x200.</p> <p>File "2016_Actives_LD200_seed111_bars3.txt" has one row for each time step of the simulation and has columns that are: number of active citizens, number of intimidated citizens, number of LEOs, number of non-intimidated citizens.</p> <p>Each file with name starting with Day for each active / intimidated (jailed) / non-intimidated (notjailed) agent has his/her x-coordinate, y-coordinate, agent's state, agent's risk aversion, agent's hardship. Each file with name starting with Day for each LEO (cop) has his/her x-coordinate, y-coordinate, agent's state and -1, -1, -1. Last 3 entrees are not used. These files are provided for each time step of the simulation.</p>
Simulation results of two agent-based models of logistics systems
<p>The data set contains the simulation results of the two different agent-based models of logistics systems: <br> 1. A medical treatment facility (MTF) model, consisting of agents representing wounded soldiers and fixed sites representing medical facilities.<br> 2. A ship fueling (SF) simulation, consisting of agents representing fuel transport ships and fixed sites representing fuel-using bases.</p> <p>Folders in folder "MTF" are related to the MTF model.</p> <p>Files in folder "casualty_rateX" are related to the case with casualty rate of X new casualties per time step, where X = 30, 50, 70, . . . , 330.</p> <p>Each file "RunN_casualtyX_fullness.txt" has the "fullness" (defined as the ratio of the number of patients at a site to the total patient capacity of that site) of each site for each time step, where the run number N = 1, 2, 3, . . . , 100.</p> <p>Each file "RunN_casualtyX_dow.txt" has the total number of Dead Of Wounds that occur in all sites in each time step, where the run number N = 1, 2, 3, . . . , 100.</p> <p>Folders in folder "SF" are related to the SF model.</p> <p>Files in folder "siteMaxX" are related to the case with an initial (and maximum) site fuel value of X units, where X = 25, 50, 75, . . . , 200.</p> <p>Each file "assetTowedFuelHistory_siteMaxX_N.txt" has the number of towed fuel units for each asset for each time step for run number N, where N = 1, 2, 3, . . . , 100.</p> <p>Each file "assetUseFuelHistory_siteMaxX_N.txt" has the number of onboard fuel units for each asset for each time step for run number N, where N = 1, 2, 3, . . . , 100.</p> <p>Each file "siteHistory_siteMaxX_N.txt" has the number of fuel units at each site for each time step for run number N, where N = 1, 2, 3, . . . , 100.</p>
A simple framework for agent-based modeling with extracellular matrix: Simulation results
<h1>Data for "A simple framework for agent-based modeling with extracellular matrix"</h1> <p> </p> <div>Metzcar, J., Duggan, Ben S., Fischer, B., Murphy, M., Heiland, R., Macklin, P. A simple framework for agent-based modeling with extracellular matrix. bioRxiv. doi: 10.1101/2022.11.21.514608</div> <div> </div> <div><a href="https://www.biorxiv.org/content/10.1101/2022.11.21.514608">Link to preprint</a></div> <div> <p>This repository contains the data for each subfigure (and video) in the preprint cited and linked abvoe, as well as the original figures and videos themselves. We have tried to include original model file (<code>PhysiCell_settings.xml</code> or other <code>*.xml</code> file) used to generate each results with each file set as well as the code (see python scripts) to make images and videos that appear in the pre-print - both within the files and base modules and examples in a separate folder.</p> <p>The data can be regenerated using release 2.0, <a href="https://github.com/PhysiCell-Models/collective-invasion/releases/tag/v2.1">2.1</a>, and <a href="https://github.com/PhysiCell-Models/collective-invasion/releases/tag/v2.2.1">2.2.1</a>. Release 2.1 is recommended for reproducing more exactly the results for the fibrosis, invasive carcinoma, and series of leader-follower results as the results archived here were produced using a set of two random number generators (one from PhysiCell and one from BioFVM). 2.2.1, used to produce the invasive cellular front results, consolidates the use of random number generators to just one (the PhysiCell one). As such, in 2.2.1, the random number generator seed may need changed to produce stochastic replicates, even when multithreading.</p> </div> <p> </p> <div>The following file sets are in this download:</div> <ul> <li>Fig2_SM_3_simple_tests.zip <ul> <li>Has results for Figure 2 and SM Figure 3</li> </ul> </li> <li>Fig3_fibrosis.zip <ul> <li>Results from fibrosis simulation (originally Figure 3, now Figure 4)</li> </ul> </li> <li>Fig4_invasive_carcinoma.zip <ul> <li>Results from invasive carcinoma simulation (originally Figure 4, now Figure 5)</li> </ul> </li> <li>Fig5_collective_migration_initial_tests.zip <ul> <li>Results from initial leader follower model development (originally Figure 5, now Figure 6)</li> </ul> </li> <li>Fig6_instant_remodeling.zip <ul> <li>Results from instant remodeling leader follower model scenariods (originally Figure 6, now Figure 7)</li> </ul> </li> <li>Fig7b_leader_follower.zip <ul> <li>Results from leader-follower collective migration scenario (origianlly Figure 7b, now Figure 8b)</li> </ul> </li> <li>images_and_vidoes_for_paper.zip <ul> <li>has all the images, videos, and some figures from the main body of the paper and the supplmental material. Updated in this version.</li> </ul> </li> <li>Invasive_cellular_front.zip <ul> <li>Has results for each ECM scenario: random, parallel, and perpindicular orientations and mixed ECM conditions. New to this data repository.</li> </ul> </li> <li>python_imaging.zip <ul> <li>Base modules and examples for producing images (tested on Python 3.9). Updated in in this verison</li> </ul> </li> <li>SM_Fig_4b_leader_follower_decreased_remodeling.zip</li> <li>stochastic_replicates.zip <ul> <li>Contains stochastic replicates for the collective migration, fibrosis, and invasive carcinoma models and source code for all.</li> </ul> </li> <li>stochastic_replicates_invasive_cellular_front.zip <ul> <li>Contains stochastic replicates for the invasive cellular front scenarios. New to this data repository.</li> </ul> </li> </ul>
Cellular population data (Agent-based model CRC)
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Data and Scripts for "Timing matters in Macrophage / CD4+ T cell interactions: An agent-based model comparing Mycobacterium tuberculosis host-pathogen interactions between latently infected and naïve individuals"
<p>This contains the data and graphing scripts necessary to recreate all figures in the paper "Timing matters in Macrophage / CD4+ T cell interactions: An agent-based model comparing Mycobacterium tuberculosis host-pathogen interactions between latently infected and naïve individuals". Supplemental Material for the paper is also provided here. Please refer to the README.md for instructions on how to use. The model can be found at: https://github.itap.purdue.edu/ElsjePienaarGroup/LTBINaiveinvitroModel/ along with the uncalibrated parameter files and scripts to run on HPCs.</p>
Data from: Computational research on mobile pastoralism using agent-based modeling and satellite imagery
Dryland pastoralism has long attracted considerable attention from researchers in diverse fields. However, rigorous formal study is made difficult by the high level of mobility of pastoralists as well as by the sizable spatio-temporal variability of their environment. This article presents a new computational approach for studying mobile pastoralism that overcomes these issues. Combining multi-temporal satellite images and agent-based modeling allows a comprehensive examination of pastoral resource access over a realistic dryland landscape with unpredictable ecological dynamics. The article demonstrates the analytical potential of this approach through its application to mobile pastoralism in northeast Nigeria. Employing more than 100 satellite images of the area, extensive simulations are conducted under a wide array of circumstances, including different land-use constraints. The simulation results reveal complex dependencies of pastoral resource access on these circumstances along with persistent patterns of seasonal land use observed at the macro level.
Multi-center Study of Artificial Intelligence Model for Gadolinium-based Contrast Agent Reduction in Brain MRI (MAGNET)
ClinicalTrials.gov study NCT05754476. IPD Sharing: YES. Countries: 1. Publications: 3.
Data from: Investigating behavioral drivers of seasonal Shiga-Toxigenic Escherichia Coli (STEC) patterns in grazing cattle using an agent-based model
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Data from: Modelling mobile agent-based ecosystem services using kernel weighted predictors
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Data from: Computational research on mobile pastoralism using agent-based modeling and satellite imagery
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Data from: Modelling social care provision in an agent-based framework with kinship networks
Current demographic trends in the UK include a fast-growing elderly population and dropping birth rates, and demand for social care amongst the aged is rising. The UK depends on informal social care -- family members or friends providing care -- for some 50% of care provision. However, lower birth rates and a graying population mean that care availability is becoming a significant problem, causing concern amongst policy-makers that substantial public investment in formal care will be required in decades to come. In this paper we present an agent-based simulation of care provision in the UK, in which individual agents can decide to provide informal care, or pay for private care, for their loved ones. Agents base these decisions on factors including their own health, employment status, financial resources, relationship to the individual in need, and geographical location. Results demonstrate that the model can produce similar patterns of care need and availability as is observed in the real world, despite the model containing minimal empirical data. We propose that our model better captures the complexities of social care provision than other methods, due to the socioeconomic details present and the use of kinship networks to distribute care amongst family members.
Data from: Modeling the internet of things, self-organizing and other complex adaptive communication networks: a cognitive agent-based computing approach
Background: Computer Networks have a tendency to grow at an unprecedented scale. Modern networks involve not only computers but also a wide variety of other interconnected devices ranging from mobile phones to other household items fitted with sensors. This vision of the "Internet of Things" (IoT) implies an inherent difficulty in modeling problems. Purpose: It is practically impossible to implement and test all scenarios for large-scale and complex adaptive communication networks as part of Complex Adaptive Communication Networks and Environments (CACOONS). The goal of this study is to explore the use of Agent-based Modeling as part of the Cognitive Agent-based Computing (CABC) framework to model a Complex communication network problem. Method: We use Exploratory Agent-based Modeling (EABM), as part of the CABC framework, to develop an autonomous multi-agent architecture for managing carbon footprint in a corporate network. To evaluate the application of complexity in practical scenarios, we have also introduced a company-defined computer usage policy. Results: The conducted experiments demonstrated two important results: Primarily CABC-based modeling approach such as using Agent-based Modeling can be an effective approach to modeling complex problems in the domain of IoT. Secondly, the specific problem of managing the Carbon footprint can be solved using a multiagent system approach.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.