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63 results for “allele frequency”
Allele scores and frequencies of 66 microsatellite locus loci in Solenopsis invicta
<p>Allele scores and frequencies of 66 microsatellite loci in <em>Solenopsis invicta </em>samples were analyzed from 65 populations and 1,074 individuals.</p> <p>65 populations were collected from South Korea, China, Taiwan, and the United States.</p>
Allele scores and frequencies of 66 microsatellite locus loci in Solenopsis geminata
<p>Allele scores and frequencies of 66 microsatellite loci in <em>Solenopsis geminata</em> samples were analyzed from 18 populations and 131 individuals.</p> <p>Eighteen populations were collected from South Korea, Laos, Myanmar, Thailand, and the United States.</p>
gnomAD Allele Frequency SQLite database V2.1.1
<p>This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of 56G for WGS v3.1.1 (about 760.000.000 variants), and allows scientists to look for minor allele frequencies of variants really fast (A query containing 300.000 variants takes ~40s.) Look here for more information: https://github.com/KalinNonchev/gnomAD_MAF</p> <p>Genomic variant database</p> <p>gnomAD Allele Frequency SQLite database V2.1.1 for hg19</p>
gnomAD Allele Frequency SQLite database V3.1.1
<p>This package scales the huge gnomAD files (on average ~120G/chrom) to a SQLite database with a size of 56G for WGS v3.1.1 (about 760.000.000 variants), and allows scientists to look for minor allele frequencies of variants really fast (A query containing 300.000 variants takes ~40s.) Look here for more information: https://github.com/KalinNonchev/gnomAD_MAF</p> <p>Genomic - variant database</p> <p>gnomAD Allele Frequency SQLite database V3.1.1 for hg38</p>
Allele frequency files for population genomic and phenotypic association analyses
<p>Adaptation to local environments involves evolution of ecologically important traits and underlying physiological processes. One challenge in studying the genetic architecture of local adaptation is to achieve high marker density to detect candidate genes in natural populations that often have small blocks of linkage disequilibrium. Here, we used low coverage whole-genome resequencing (lcWGR) to identify genome regions involved in thermal adaptation in wild redband trout <i>Oncorhynchus mykiss gairdneri</i>, a subspecies of rainbow trout that inhabits ecosystems ranging from cold montane forests to high elevation deserts.</p>
Data from: Contemporary evolution of sea urchin gamete-recognition proteins: experimental evidence of density-dependent gamete performance predicts shifts in allele frequencies over time
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Data from: Positive selection of deleterious alleles through interaction with a sex-ratio suppressor gene in African buffalo: a plausible new mechanism for a high frequency anomaly
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Data from: Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies)
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Data from: A new method for studying population genetics of cyst nematodes based on Pool-Seq and genome-wide allele frequency analysis
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Data from: Accuracy of allele frequency estimation using pooled RNA-Seq
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Allele frequency files for population genomic and phenotypic association analyses
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Data from: How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data
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Synchronized file of allele frequencies for: Using seasonal genomic changes to understand historical adaptation to new environments: parallel selection on stickleback in highly-variable estuaries
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Data from: Geographic variation in Megalorchestia californiana allele frequencies may be caused by winter rather than summer temperatures
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Data from: Genome-wide analysis of allele frequency change in sunflower crop-wild hybrid populations evolving under natural conditions
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Data from: Microevolution of S-allele frequencies in wild cherry populations: respective impacts of negative frequency dependent selection and genetic drift
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Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies
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Geographic allele frequency variation in the 1000 Genomes hg38 NYGC dataset
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Data from: Controlling for p-value inflation in allele frequency change in experimental evolution and artificial selection experiments
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Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus)
<p>Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here we report hundreds of loci underlying ecological adaptation to different geographic areas and spawning conditions. Four of these represent megabase inversions confirmed by long read sequencing. The genetic architecture underlying ecological adaptation in herring deviates from expectation under a classical infinitesimal model for complex traits because of large shifts in allele frequencies at hundreds of loci under selection.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.