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AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Greece
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Luxembourg
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Germany
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Belgium
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Ireland
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - France
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Cyprus
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Bulgaria
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Hungary
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Slovenia
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Poland
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Latvia
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - The Netherlands
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Slovakia
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Norway
<p>This dataset contains the results of the surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
AI results complementing the 2021 Annual Report on surveillance for Avian Influenza in poultry and wild birds in Member States of the European Union - Iceland
<p>This dataset contains the results of the EU co-funded surveillance activities conducted in 2021, which consisted of:</p> <ul> <li>Serological surveys to monitor the circulation of AIV subtypes H5 and H7 in poultry (active surveillance). These surveys should preferentially target poultry species or production systems with increased risk for introduction of avian influenza (AI).</li> <li>Passive surveillance aiming at the virological detection of AI in wild birds found dead or moribund.</li> </ul>
Annual report on surveillance for avian influenza in poultry and wild birds in Member States of the European Union in 2021 – monthly maps
<p>Here you can find the monthly maps referred to in the 'Annual report on surveillance for avian influenza in poultry and wild birds in Member States of the European Union in 2021' by EFSA. Figure legend for all figures: Monthly observations and samples from wild birds on the EFSA list of target species for 2021 by NUTS3 region. The green colour scale represents the number of wild bird observations from the target species, as per data provided by the EuroBirdPortal project. The black dots represent the number of wild bird samples from target species tested within the countries' avian influenza passive surveillance programmes. Wild bird samples reported at NUTS2 level are not shown on these maps.</p>
Hone et al, 2013: avian data
<p>Hone, David; O__Gorman, Eoin J. (2013): Body Size datasets for PLOS ONE paper doi:10.1371. figshare.</p> <p>http://dx.doi.org/10.6084/m9.figshare.627530 Retrieved 16:42, Apr 09, 2015 (GMT)</p> <p> </p>
Systematics of the avian family Alaudidae using multilocus and genomic data
<p>SNP datasets (gzipped VCF files) and tree output (newick-formatted trees in .trees files) associated with the publication <em>Systematics of the avian family Alaudidae using multilocus and genomic data</em> by Alström et al. (2023).</p> <p>In the VCF files, samples have intermediary sequence names. Below is a key (sorted per name in VCF file) to taxon and ID. Further information can be found in Dataset SM1 in the original publication.</p> <table> <tbody> <tr> <td><strong>VCF_name</strong></td> <td><strong>Taxon</strong></td> <td><strong>ID</strong></td> </tr> <tr> <td>A_hamertoni_hamertoni_1982_3_71</td> <td>Alaemon hamertoni hamertoni</td> <td>NHMUK 1982.3.71</td> </tr> <tr> <td>A_hamertoni_tertia_1982_3_12</td> <td>Alaemon hamertoni tertia</td> <td>NHMUK 1982.3.12</td> </tr> <tr> <td>A_phoenicura_1949_25_4559</td> <td>Ammomanes phoenicura</td> <td>NHMUK 1949.25.4559</td> </tr> <tr> <td>Ala_alaudipes</td> <td>Alaemon alaudipes alaudipes</td> <td>DZUG U5653 </td> </tr> <tr> <td>Alauda_arvensis_KZ</td> <td>Alauda arvensis dulcivox</td> <td>DZUG U0587 </td> </tr> <tr> <td>Alaudala_seebohmi</td> <td>Alaudala cheleensis seebohmi</td> <td>DZUG U5316</td> </tr> <tr> <td>AmmocincU4892_S121</td> <td>Ammomanes cinctura</td> <td>DZUG U4892</td> </tr> <tr> <td>AmmodesU5745_S28</td> <td>Ammomanes deserti</td> <td>DZUG U5745</td> </tr> <tr> <td>AmmodesU5748_S106</td> <td>Galerida cristata magna</td> <td>DZUG U5748</td> </tr> <tr> <td>C_duponti_margaritae_1952_51_107</td> <td>Chersophilus duponti margaritae</td> <td>NHMUK 1952.51.107</td> </tr> <tr> <td>Cal_brachydactyla</td> <td>Calandrella brachydactyla rubiginosa</td> <td>DZUG U5655</td> </tr> <tr> <td>CalbarlU5662_S32</td> <td>Calendulauda erythroclamys patae</td> <td>DZUG U5662</td> </tr> <tr> <td>CalsabotaU2344_S33</td> <td>Calendulauda sabota suffusca</td> <td>DZUG U2344</td> </tr> <tr> <td>CheralboU5652_S52</td> <td>Chersomanes albofasciata</td> <td>DZUG U5652</td> </tr> <tr> <td>E_leucotis_BMNH_1952.25.36</td> <td>Eremopterix leucotis</td> <td>NHMUK 1952.25.36</td> </tr> <tr> <td>ErealpeU4610_S144</td> <td>Eremophila alpestris brandti</td> <td>DZUG U4610</td> </tr> <tr> <td>Eremalauda_dunni</td> <td>Eremalauda eremodites</td> <td>DZUG U4578</td> </tr> <tr> <td>Eremopterix_hova_FMNH449163</td> <td>Eremopterix hova</td> <td>FMNH 449163</td> </tr> <tr> <td>G_deva_1949_whi_1_8153</td> <td>Galerida deva</td> <td>NHMUK 1949.whi.1.8153</td> </tr> <tr> <td>G_malabarica_1949_whi_1_7738</td> <td>Galerida malabarica</td> <td>NHMUK 1949.whi.1.7738</td> </tr> <tr> <td>HetarchU2811_S34</td> <td>Heteromirafra archeri ("sidamoensis")</td> <td>DZUG U2811</td> </tr> <tr> <td>Heteromirafra_ruddi</td> <td>Heteromirafra ruddi</td> <td>DZUG U5661 </td> </tr> <tr> <td>Lullula_arborea_U544</td> <td>Lullula arborea</td> <td>UWBM 64680 </td> </tr> <tr> <td>M_a_africana_BMNH_1927.5.26.5</td> <td>Corypha [Mirafra] africana africana</td> <td>NHMUK 1927.5.26.5</td> </tr> <tr> <td>M_africana_athi_1951_13_2495</td> <td>Corypha [Mirafra] africana athi</td> <td>NHMUK 1951.13.2495</td> </tr> <tr> <td>M_africana_athi_1968_48_2</td> <td>Corypha [Mirafra] africana athi</td> <td>NHMUK 1968.48.2</td> </tr> <tr> <td>M_albicauda_1916_12_1_840</td> <td>Mirafra albicauda </td> <td>NHMUK 1916.12.1.840</td> </tr> <tr> <td>M_ashi_1982_3_4</td> <td>Corypha [Mirafra] ashi</td> <td>NHMUK 1982.3.4</td> </tr> <tr> <td>M_collaris_BMNH_1923.8.7.2633</td> <td>Amirafra [Mirafra] collaris</td> <td>NHMUK 1923.8.7.2633</td> </tr> <tr> <td>M_collaris_BMNH_1923.8.7.2634</td> <td>Amirafra [Mirafra] collaris</td> <td>NHMUK 1923.8.7.2634</td> </tr> <tr> <td>M_cordofanica_1932_8_6_261</td> <td>Mirafra cordofanica</td> <td>NHMUK 1932.8.6.261</td> </tr> <tr> <td>M_cordofanica_1932_8_6_262</td> <td>Mirafra cordofanica</td> <td>NHMUK 1932.8.6.262</td> </tr> <tr> <td>M_gilletti_1982_3_10</td> <td>Calendulauda [Mirafra] gilletti arorihensis</td> <td>NHMUK 1982.3.10</td> </tr> <tr> <td>M_gilletti_1982_3_9</td> <td>Calendulauda [Mirafra] gilletti degodiensis</td> <td>NHMUK 1982.3.9</td> </tr> <tr> <td>M_hypermetra_BMNH_1912.12.23.317</td> <td>Corypha [Mirafra] hypermetra hypermetra</td> <td>NHMUK 1912.12.23.317</td> </tr> <tr> <td>M_rufa_lynesi_1922_12_8_1553</td> <td>Calendulauda [Mirafra] rufa rufa </td> <td>NHMUK 1922.12.8.1553</td> </tr> <tr> <td>M_rufa_nigriticola_1932_8_6_253</td> <td>Calendulauda [Mirafra] rufa nigriticola</td> <td>NHMUK 1932.8.6.253</td> </tr> <tr> <td>M_somalica_somalica_1919_10_6_27</td> <td>Corypha [Mirafra] somalica somalica</td> <td>NHMUK 1919.10.6.27</td> </tr> <tr> <td>MelcalaU0583_S124</td> <td>Melanocorypha calandra psammochroa</td> <td>DZUG U0583</td> </tr> <tr> <td>MelyeltU0580_S35</td> <td>Melanocorypha yeltoniensis</td> <td>DZUG U0580</td> </tr> <tr> <td>Mirafra_alb_ZMB_2000.9488</td> <td>Mirafra albicauda </td> <td>ZMB 2000.9488</td> </tr> <tr> <td>Mirafra_albi_ZMB_49.225</td> <td>Mirafra albicauda </td> <td>ZMB 49.225 (holotype)</td> </tr> <tr> <td>Mirafra_degodiensis</td> <td>Calendulauda [Mirafra] gilletti degodiensis</td> <td>DZUG U2808</td> </tr> <tr> <td>Mirafra_rufocinnamomea_U5657</td> <td>Amirafra [Mirafra] rufocinnamomea fischeri</td> <td>FMNH 484672 (= DZUG U5657)</td> </tr> <tr> <td>MirchenU5660_S37</td> <td>Mirafra cheniana</td> <td>DZUG U5660</td> </tr> <tr> <td>MirchenU5759_S36</td> <td>Mirafra cheniana</td> <td>DZUG U5759</td> </tr> <tr> <td>MirfascU5758_S60</td> <td>Corypha [Mirafra] fasciolata</td> <td>DZUG U5758 </td> </tr> <tr> <td>Panurus</td> <td>Panurus biarmicus</td> <td>1ET92164|SAMN13107499</td> </tr> <tr> <td>Ramphocoris</td> <td>Ramphocoris clotbey</td> <td>CEFE Rhcl1 (= DZUG U5651)</td> </tr> <tr> <td>Spizocorys_fringillaris_U5659</td> <td>Spizocorys fringillaris</td> <td>DZUG U5659</td> </tr> <tr> <td>Spizocorys_obbiensis_1908_5_28_104</td> <td>Spizocorys obbiensis</td> <td>NHMUK 1908.5.28.104</td> </tr> </tbody> </table> <p> </p> <p>For convenience, the same data sorted per taxon:</p> <table> <tbody> <tr> <td><strong>VCF_name</strong></td> <td><strong>Taxon</strong></td> <td><strong>ID</strong></td> </tr> <tr> <td>Ala_alaudipes</td> <td>Alaemon alaudipes alaudipes</td> <td>DZUG U5653 </td> </tr> <tr> <td>A_hamertoni_hamertoni_1982_3_71</td> <td>Alaemon hamertoni hamertoni</td> <td>NHMUK 1982.3.71</td> </tr> <tr> <td>A_hamertoni_tertia_1982_3_12</td> <td>Alaemon hamertoni tertia</td> <td>NHMUK 1982.3.12</td> </tr> <tr> <td>Alauda_arvensis_KZ</td> <td>Alauda arvensis dulcivox</td> <td>DZUG U0587 </td> </tr> <tr> <td>Alaudala_seebohmi</td> <td>Alaudala cheleensis seebohmi</td> <td>DZUG U5316</td> </tr> <tr> <td>M_collaris_BMNH_1923.8.7.2633</td> <td>Amirafra [Mirafra] collaris</td> <td>NHMUK 1923.8.7.2633</td> </tr> <tr> <td>M_collaris_BMNH_1923.8.7.2634</td> <td>Amirafra [Mirafra] collaris</td> <td>NHMUK 1923.8.7.2634</td> </tr> <tr> <td>Mirafra_rufocinnamomea_U5657</td> <td>Amirafra [Mirafra] rufocinnamomea fischeri</td> <td>FMNH 484672 (= DZUG U5657)</td> </tr> <tr> <td>AmmocincU4892_S121</td> <td>Ammomanes cinctura</td> <td>DZUG U4892</td> </tr> <tr> <td>AmmodesU5745_S28</td> <td>Ammomanes deserti</td> <td>DZUG U5745</td> </tr> <tr> <td>A_phoenicura_1949_25_4559</td> <td>Ammomanes phoenicura</td> <td>NHMUK 1949.25.4559</td> </tr> <tr> <td>Cal_brachydactyla</td> <td>Calandrella brachydactyla rubiginosa</td> <td>DZUG U5655</td> </tr> <tr> <td>M_gilletti_1982_3_10</td> <td>Calendulauda [Mirafra] gilletti arorihensis</td> <td>NHMUK 1982.3.10</td> </tr> <tr> <td>M_gilletti_1982_3_9</td> <td>Calendulauda [Mirafra] gilletti degodiensis</td> <td>NHMUK 1982.3.9</td> </tr> <tr> <td>Mirafra_degodiensis</td> <td>Calendulauda [Mirafra] gilletti degodiensis</td> <td>DZUG U2808</td> </tr> <tr> <td>M_rufa_nigriticola_1932_8_6_253</td> <td>Calendulauda [Mirafra] rufa nigriticola</td> <td>NHMUK 1932.8.6.253</td> </tr> <tr> <td>M_rufa_lynesi_1922_12_8_1553</td> <td>Calendulauda [Mirafra] rufa rufa </td> <td>NHMUK 1922.12.8.1553</td> </tr> <tr> <td>CalbarlU5662_S32</td> <td>Calendulauda erythroclamys patae</td> <td>DZUG U5662</td> </tr> <tr> <td>CalsabotaU2344_S33</td> <td>Calendulauda sabota suffusca</td> <td>DZUG U2344</td> </tr> <tr> <td>CheralboU5652_S52</td> <td>Chersomanes albofasciata</td> <td>DZUG U5652</td> </tr> <tr> <td>C_duponti_margaritae_1952_51_107</td> <td>Chersophilus duponti margaritae</td> <td>NHMUK 1952.51.107</td> </tr> <tr> <td>M_a_africana_BMNH_1927.5.26.5</td> <td>Corypha [Mirafra] africana africana</td> <td>NHMUK 1927.5.26.5</td> </tr> <tr> <td>M_africana_athi_1951_13_2495</td> <td>Corypha [Mirafra] africana athi</td> <td>NHMUK 1951.13.2495</td> </tr> <tr> <td>M_africana_athi_1968_48_2</td> <td>Corypha [Mirafra] africana athi</td> <td>NHMUK 1968.48.2</td> </tr> <tr> <td>M_ashi_1982_3_4</td> <td>Corypha [Mirafra] ashi</td> <td>NHMUK 1982.3.4</td> </tr> <tr> <td>MirfascU5758_S60</td> <td>Corypha [Mirafra] fasciolata</td> <td>DZUG U5758 </td> </tr> <tr> <td>M_hypermetra_BMNH_1912.12.23.317</td> <td>Corypha [Mirafra] hypermetra hypermetra</td> <td>NHMUK 1912.12.23.317</td> </tr> <tr> <td>M_somalica_somalica_1919_10_6_27</td> <td>Corypha [Mirafra] somalica somalica</td> <td>NHMUK 1919.10.6.27</td> </tr> <tr> <td>Eremalauda_dunni</td> <td>Eremalauda eremodites</td> <td>DZUG U4578</td> </tr> <tr> <td>ErealpeU4610_S144</td> <td>Eremophila alpestris brandti</td> <td>DZUG U4610</td> </tr> <tr> <td>Eremopterix_hova_FMNH449163</td> <td>Eremopterix hova</td> <td>FMNH 449163</td> </tr> <tr> <td>E_leucotis_BMNH_1952.25.36</td> <td>Eremopterix leucotis</td> <td>NHMUK 1952.25.36</td> </tr> <tr> <td>AmmodesU5748_S106</td> <td>Galerida cristata magna</td> <td>DZUG U5748</td> </tr> <tr> <td>G_deva_1949_whi_1_8153</td> <td>Galerida deva</td> <td>NHMUK 1949.whi.1.8153</td> </tr> <tr> <td>G_malabarica_1949_whi_1_7738</td> <td>Galerida malabarica</td> <td>NHMUK 1949.whi.1.7738</td> </tr> <tr> <td>HetarchU2811_S34</td> <td>Heteromirafra archeri ("sidamoensis")</td> <td>DZUG U2811</td> </tr> <tr> <td>Heteromirafra_ruddi</td> <td>Heteromirafra ruddi</td> <td>DZUG U5661 </td> </tr> <tr> <td>Lullula_arborea_U544</td> <td>Lullula arborea</td> <td>UWBM 64680 </td> </tr> <tr> <td>MelcalaU0583_S124</td> <td>Melanocorypha calandra psammochroa</td> <td>DZUG U0583</td> </tr> <tr> <td>MelyeltU0580_S35</td> <td>Melanocorypha yeltoniensis</td> <td>DZUG U0580</td> </tr> <tr> <td>M_albicauda_1916_12_1_840</td> <td>Mirafra albicauda </td> <td>NHMUK 1916.12.1.840</td> </tr> <tr> <td>Mirafra_alb_ZMB_2000.9488</td> <td>Mirafra albicauda </td> <td>ZMB 2000.9488</td> </tr> <tr> <td>Mirafra_albi_ZMB_49.225</td> <td>Mirafra albicauda </td> <td>ZMB 49.225 (holotype)</td> </tr> <tr> <td>MirchenU5660_S37</td> <td>Mirafra cheniana</td> <td>DZUG U5660</td> </tr> <tr> <td>MirchenU5759_S36</td> <td>Mirafra cheniana</td> <td>DZUG U5759</td> </tr> <tr> <td>M_cordofanica_1932_8_6_261</td> <td>Mirafra cordofanica</td> <td>NHMUK 1932.8.6.261</td> </tr> <tr> <td>M_cordofanica_1932_8_6_262</td> <td>Mirafra cordofanica</td> <td>NHMUK 1932.8.6.262</td> </tr> <tr> <td>Panurus</td> <td>Panurus biarmicus</td> <td>1ET92164|SAMN13107499</td> </tr> <tr> <td>Ramphocoris</td> <td>Ramphocoris clotbey</td> <td>CEFE Rhcl1 (= DZUG U5651)</td> </tr> <tr> <td>Spizocorys_fringillaris_U5659</td> <td>Spizocorys fringillaris</td> <td>DZUG U5659</td> </tr> <tr> <td>Spizocorys_obbiensis_1908_5_28_104</td> <td>Spizocorys obbiensis</td> <td>NHMUK 1908.5.28.104</td> </tr> </tbody> </table> <p>Questions can be directed to the corresponding authors.</p>
Dissemination of information in event-based surveillance, a case study of Avian Influenza - dataset
<p>This dataset contains a set of tables corresponding to the manual analysis of outbreak-related reports detected by two event-based surveillance tools, PADI-web and HealthMap, supporting the submitted article "Dissemination of information in event-based surveillance, a case study of Avian Influenza".</p> <p>The reports were published between 1 July 2018 and 30<sup>st</sup> June 2019 and described one or several avian influenza outbreaks. We collected 337 reports from PADI-web and 115 from HealthMap. Two epidemiologists identified all the reported events in the news, and classified them as official (notified to the World Organization for Animal Health) or non-official.</p> <p>In order to trace back the source of the event’s information, the epidemiologist manually traced the information pathway of all events mentioned in the PADI-web and HealthMap news. The pathway was deducted from the sources cited in the news. When a source was cited with a hyperlink, we followed the hyperlink to retrace the information pathway as far as possible to the primary source. For each cited source, we created a pair of emitter <em>S<sub>E</sub></em> and receptor sources <em>S<sub>R</sub></em>. We labelled each new source with its type (e.g. online news source, national veterinary authority, etc.). We also recorded their geographical focus (local, national or international) and their specialization in the animal health news coverage (general or specialized).</p> <p>The script for data analyses is available at https://github.com/SarahVal/EBS-network.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.