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FIGURE 10 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 10. Phyllodromica iberica morph #3. A–F male, SEM pictures of different tergal glandular structures in dorsal view. (A, B), (E, F) Two different forms of glandular structures of tergites 7 and 8 of two specimens; white arrow heads in A point to the bulge-like cuticule limitations of the antero-lateral borders of the bristle fields which is absent in the other form (white arrow heads in E); on tergite 8 bristles are also present in the central region of the tergite (white arrow heads in B, F); (C, D) Medio-anterior part of tergite 8 of two further specimens showing variously developed conelike processes. The unnatural shape of the tergite in B (compared with F) is due to an mounting artefact. G, H female. (G) Thoracal nota; (H) abdominal tergite 5. Abbreviations: a artificial structures (originated during SEM preparation procedure), bf bristle field, cp conelike process, r ridge between bristle fields, tt transversal trough. Same scale for (A, E), (B, F) and (C, D). Identification: (A, B) Sp 388/M1, (E, F) Sp 512/M1, (C) Sp 186/M7, (D) Sp 361/M2, (G, H) Sp 380/W1.
FIGURE 11 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 11. Phyllodromica iberica morph #3, male. A Tergite 8; B-E Tergite 6; in C, enlargement of the left half of the tergite depicted in B with narrow transversal torus-like structure (between white arrows) bearing bristles (white spots) in enhanced density; in D, lack of torus-like structure, only bristles (white spots) in enhanced density. D, E Tergite 6, two examples of different tergite colouration. F–H Abdominal tergites 6–8 of one specimen. (F) Tergite 6; (G) tergite 7, bristle fields antero-lateral without bulge-like cuticule limitations (white arrows); (H) tergite 8, conelike process nearly completely missing. I–L Abdominal tergites 6–8 of one specimen. (I) Tergite 6; (K) tergite 7, white arrows point to the shallow pouches appearing as crescent–shaped black shadows; (L) tergite 8, well developed conelike process. Same scale for (A, G, H, K, L) and (B, D, E, F, I). Identification: (A) Sp 395/M1, (B, C) Sp 148b/M1, (D) Sp 460/M1, (E) Sp 387a/M1, (F, G, H) Sp 270a/M1, (I, K, L) Sp 335/5.
FIGURE 9 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 9. Phyllodromica iberica morph #3, male. A Thoracal nota. B–F Abdominal tergites 5–9. (B) Tergite 5; (C) tergite 6; (D) tergite 7 and (E) tergite 8 with glandular structures in the anterior part of the tergites; (F) tergite 9. G Terminalia with tergite 10 (sa), cerci and paraprocts. H Hook of left phallomere with the posterior end on the top. I Subgenital plate with remaining genital sclerites (without hook). Abbreviations: a apodemes of subgenital plate, ap anterior process, bf bristle field, c cercus, cl claw of hook, cs cleft sclerite, ea endophallic apodeme, hs helmet sclerite, ml median lobe, rp right paraproct, R3 sclerite of the right phallomere, s stylus, sa supraanal plate, sh shaft, st stalk, sub subgenital plate, tt transversal trough, v velum. Same scale for (B, C, G) and (D, E, H). Identification: Sp 380/M2.
FIGURE 8. A–E in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 8. A–E Phyllodromica iberica morph #2, male. (A–D) Different colour patterns of tergite 6; (E) helmet sclerite. F, G Phyllodromica iberica morph #2, female. (F) Thoracal nota; (G) abdominal tergite 5. H Right front leg of Phyllodromica iberica morph #1, male in frontal view. I Right front leg of Phyllodromica quadracantha, male in frontal view. Abbreviations: fr "frontal" part of helmet sclerite, cox coxa, fem femur, hs helmet sclerite re "rear" of helmet sclerite, tib tibia, tm tegmen. Same scale for (A–D), (F, G) and (H, I). Identification: (A) Sp 266/2, (B) Sp 365/3, (C) Sp 365a/M14, (D) Sp 365a/M8, (E) Sp 267c/M1, (F, G) Sp 267c/W2, (H) Sp 510/M11, (I) Sp 203d/M1 (holotype)..
FIGURE 7 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 7. Phyllodromica iberica morph #2, male, SEM pictures of tergite 6 and the tergal glandular structures. A–C Tergite 6. (A) Latero-frontal view from slightly above, white arrows point to two shallow longitudinal depressions posteriorly of the torus (to); (B) dorsal view of the whole tergite; (C) transversal torus with bristles (between arrows) of the right half of the tergite. As a result of the preparation procedure for SEM the posterior margin of the tergite and its emargination in the middle (in B) appear narrower than under natural conditions. D, E Tergite 7. (D) Lateral view of tergite from slightly above; (E) glandular region in dorsal view. F–H Tergite 8. (F) Dorsal view of the whole tergite with median emargination in the distribution of the bristles (white arrow heads); (G) latero-frontal view from slightly above; (H) lateral view of the anterior part of the tergite. Abbreviations: bf bristle field, cm central mound, cp conelike process, m mound, se sinusoidal edge, sp shallow pit, to transversal torus, tr transversal ridge, tt transversal trough. Same scale for (A, B) and (D, F, G). Identification: (A–C) Sp 267b/M6, (D–H) Sp 267b/M4.
FIGURE 12 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 12. Phyllodromica quadracantha, male (holotype). A Thoracal nota. B–F Abdominal tergites 5–9. (B) Tergite 5; (C) tergite 6; (D) tergite 7 and (E) tergite 8 with glandular structures in the anterior part of the tergites; (F) tergite 9. G Terminalia with tergite 10 (sa), cerci and paraprocts. H Hook of left phallomere with the posterior end on the top. I Subgenital plate with remaining genital sclerites (without hook). Abbreviations: ap anterior process, bf bristle field, c cercus, ml median lobe, rp right paraproct, sa supraanal plate, tr transversal ridge, tt transversal trough. Same scale for (B, C, G) and (D, E, H). Identification: Sp 203d/M1 (holotype).
FIGURE 13 Phyllodromica quadracantha. A–C in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 13 Phyllodromica quadracantha. A–C male, SEM pictures of glandular structures of tergites 7 and 8 in dorsal view. (A) Tergite 7; (B) tergite 8, bristles are present also in the median tergite region (white arrow heads); (C) anteriormedian region of tergite 8, no conelike process present. D–H female. (D) Thoracal nota; (E) Tergite 5; (F) Subgenital plate; (G) dorsal complex of genitalia in ventral view, posterior end on top, without additional sclerite between pl and is (compare Fig. 2 D, E); (H) ventral komplex of genitalia: laterosternal shelf with intersternal folds between the arms. Abbreviations: a apodemal process, bd dorsal sclerite of basivalvula, bv ventral sclerite of basivalvula, c cercus, i intersternal fold, is intercalary sclerite, l laterosternal shelf, ls laterosternite IX, pl posterior lobe of valvifer II, pp paraproct, pt paratergites, tr transversal ridge, T9 tergite 9, T10 tergite 10, v valves. Same scale for (D, E). Identification: (A–D) Sp 499/M1, (E–I) Sp 203d/W1.
FIGURE 6 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 6. Phyllodromica iberica morph #2, male. A Thoracal nota. B–F Abdominal tergites 5–9. (B) Tergite 5; (C) tergite 6 with a narrow transversal torus (white arrow heads) bearing bristles (white spots) in extraordinary density; (D) tergite 7, white arrow heads point to the shallow pouches appearing as crescent–shaped black shadows; (E) tergite 8; (F) tergite 9 on glass rod. G Terminalia with tergite 10 (sa), cerci and paraprocts. H Hook of left phallomere with the posterior end on the top. I Subgenital plate with remaining genital sclerites (without hook). Abbreviations: ap anterior process, bf bristle field cm central mound, cp conelike process, m mound, ml median lobe, mp medio-anterior process of right paraproct, r ridge between bristle fields, rp right paraproct, sa supraanal plate, se sinusoidal edge, sp shallow pit, tt transversal trough. Same scale for (B, C, G) and (D, E, H). Identification: Sp 267c/M2.
FIGURE 5 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 5. Phyllodromica iberica morph #1, A–E, male. (A) Tergite 7 and (B) tergite 8 of a male specimen differing from the holotype in its colouration; (C) membrane glands of the left lateral region on the anterior border of tergite 6; (D) right paraproct; (E) distal end of tibia of the right mid leg (bearing 5 distal spines) in posterior view. F–I, female. (F, H) Different colour pattern of pronotum; (G, I) tergite 5. Abbreviations: mg membrane glands, mp medio-anterior process of right paraproct, rp right paraproct, sp spinelike process of right paraproct, tar tarsus, tib tibia. Same scale for (C, D) and (F–I). Identification: (A, B) Sp 330/3, (C, D) Sp 292b/M3 (holotype), (E) Sp 510/M1, (F, G) Sp 292b/W1, (H, I) Sp 292b/W2.
FIGURE 4 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 4. Phyllodromica iberica morph #1, male, SEM pictures of tergal glandular structures. A–C, G Tergite 7. (A) Latero-frontal view from slightly above, anterior wall of trough slightly hollowed out anteriorly (white arrows); (B) lateral view of the glandular region from slightly above; (C) glandular region in dorsal view; (G) bristles of bristle field. D– F, H, I Tergite 8. (D) Dorsal view of the whole tergite, median emargination in the distribution of the bristles (white arrow heads); (E) latero-frontal view from slightly above; (F) dorsal view of the conelike process; (H) porous surface of the central mound; (I) soft villi on the surface of the conelike process. Abbreviations: bf bristle field, cm central mound, cp conelike process, m mound, r ridge, se sinusoidal edge, sp shallow pit, tt transversal trough. Identification: (A–C, E– I) Sp 270a/M4, (D) Sp 85/11.
FIGURE 3 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 3. Phyllodromica iberica morph #1, male (holotype). A Thoracal nota. B–F Abdominal tergites 5–9. (B) Tergite 5 and (C) tergite 6 with membranous glands in the lateral region of the anterior margin of tergites (black arrows); (D) tergite 7, white arrow heads point to the shallow pouches appearing as crescent–shaped black shadows; (E) tergite 8; (F) tergite 9 on glass rod. G Terminalia with tergite 10 (sa), cerci and paraprocts. H Hook of left phallomere with the posterior end on the top. I Subgenital plate with remaining genital sclerites (without hook). Abbreviations: ap anterior process, bf bristle field, c cercus, cm central mound, cp conelike process, ll lateral lobe, m mound, mes mesonotum, met metanotum, ml median lobe, mp medio-anterior process, pml posterior median lobe, pro pronotum, r ridge between bristle fields, rp right paraproct, sa supraanal plate, se sinusoidal edge, sp shallow pits, tm tegmen, tr transversal ridge, tt transversal trough. Same scale for (B, C, G) and (D, E, H). Identification: Sp 292b/M3 (holotype).
FIGURE 2 in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 2. Phyllodromica subaptera (female). A Thoracal nota. B Abdominal tergite 5. C Subgenital plate with two apodemal processes (a). D Dorsal complex of genitalia with additional sclerite (as): ventral view, posterior end on top. E Additional sclerite in higher enlargement (equivalent to "black frame" in D). F Ventral complex of genitalia: laterosternal shelf with intersternal folds between the arms. Abbreviations: as additional sclerite, a apodemal process, bd dorsal sclerite of basivalvula, bv ventral sclerite of basivalvula, c cercus, i intersternal fold, is intercalary sclerite, l laterosternal shelf, ls laterosternite IX, pl posterior lobe of valvifer II, pp paraproct, pt paratergites, T9 tergite 9, T10 tergite 10, v valves. Same scale for (B, C) and (D, F). Identification: Sp 203c/W4.
FIGURE 1. A–C P in Revision and phylogeny of the subaptera-group of Phyllodromica (Blattoptera: Blattellidae: Ectobiinae), including a parthenogenetic species and the evaluation of COI sequences for species identification (DNA barcoding)
FIGURE 1. A–C P. iberica morph #1, habitus. (A) Male in dorsal view; (B) female in dorsal and (C) ventral view. D Oothek of P. quadracantha (lateral view). Abbreviations: a antenna, c cercus, fl coxa of foreleg, h head, hl coxa of hindleg, mes mesonotum, met metanotum, ml coxa of midleg, pm palpus maxillaris, pro pronotum, sub subgenital plate, T2–T10 tergites 2–10, tm tegmen. Same scale in A and B. Localities: (A–C) Sp 449a, (D) Sp 500.
Data for morphometric analysis and DNA barcode sequence for the new fish species Polymixia hollisterae
<p>Two datasets are provided to support the journal article (https://doi.org/10.1643/i2020112) by T. C. Grande and M. V. H. Wilson naming the new Bermuda fish species <em>Polymixia hollisterae</em>. The first dataset is for 2-D multivariate morphometric comparisons of selected specimens and species of the fish genus <em>Polymixia</em>. The file is in TPS format, as a plain text file, for use in the application MorphoJ. The data are for 27 specimens with pixel coordinates for 34 landmarks digitized in ImageJ and used to generate Fig. 13 in the referenced publication. The second dataset, published here courtesy of Dr. R. Eytan, is a mitochondrial DNA barcode sequence in fasta format for the second paratype specimen, a small juvenile of the new species. The specimen is only the third one known of the new species and the only one not from Bermuda. It was collected in the north-central Gulf of Mexico and is now deposited in the Harvard University MCZ fish collection as catalog number MCZ 174218. The fasta file can be used as input to the barcode identification function at boldsystems.org, although its original identification in BOLD was incorrect.</p>
Combinatorial Barcode Scripts for the manuscript 'Scalable Combinatorial Synthesis of Synthetic DNA Barcode Sequences'
<p>Raw data and custom Python code for the manuscript 'Scalable Combinatorial Synthesis of Synthetic DNA Barcode Sequences'.</p>
FIGURE 1 in Actinarctus doryphorus (Tanarctidae) DNA barcodes and phylogenetic reinvestigation of Arthrotardigrada with new A. doryphorus and Echiniscoididae sequences
FIGURE 1. Actinarctus doryphorus specimens sampled at Roscoff, France, of which the cytochrome c oxidase subunit I (COI), 18S and 28S rDNA fragments were amplified. Light microscopic images of live animals. Characteristics of the species include e.g. telescopic legs (le) with four-terminal toes (to), the cuticular wing-like structure (alae), which contains epicuticular pillars (pi) and a set of head appendages, including external cirri (ec), internal cirri (ic) and primary clavae (pc) (see Persson et al. 2019 for more details). A. Specimen 06, presumably female. B. Specimen 07, presumably juvenile. C. Specimen 08, presumably male. D. Specimen 10, presumably juvenile. E. Specimen 12, female. F. Specimen 17, presumably juvenile. G. Specimen 18, presumably female. H. Specimen 22, presumably male. I. Specimen 23, presumably male. COI was obtained from all specimens, 18S from specimen no. 08, 10, 12, 17 and 18, and 28S from specimen no. 08 and 10. Specimens in A, C, E, F, H and I are seen ventrally, whereas B, D and G are seen dorsally. Anterior is up (and left in D, F). Pharyngeal bulb (pb), sensory organ of the fourth leg (p4). Scale bar = 20 µm in D, F otherwise 30 µm.
FIGURE 4 in Actinarctus doryphorus (Tanarctidae) DNA barcodes and phylogenetic reinvestigation of Arthrotardigrada with new A. doryphorus and Echiniscoididae sequences
FIGURE 4. Phylogenetic tree inferred from BI analyses of the combined 18S/28S rDNA dataset. Unavailable 18S sequences were substituted with N's (indicated by "no 18S"). Actinarctus doryphorus is placed together with Tanarctus and Arthrotardigrada is inferred to be paraphyletic. Posterior probabilities (upper value) relating to BI analyses and bootstrap values (lower) from ML analyses are shown at the nodes. (–) indicates bootstrap values <50.
FIGURE 3 in Actinarctus doryphorus (Tanarctidae) DNA barcodes and phylogenetic reinvestigation of Arthrotardigrada with new A. doryphorus and Echiniscoididae sequences
FIGURE 3. Phylogenetic tree inferred from BI analyses of the 18S rDNA dataset. Arthrotardigrada is inferred to be paraphyletic. Posterior probabilities (upper value) relating to BI analyses and bootstrap values (lower) from ML analyses are shown at the nodes. (–) indicates bootstrap values <50.
FIGURE 2 in Actinarctus doryphorus (Tanarctidae) DNA barcodes and phylogenetic reinvestigation of Arthrotardigrada with new A. doryphorus and Echiniscoididae sequences
FIGURE 2. Phylogenetic tree inferred from BI analyses of the 28S rDNA dataset. Actinarctus doryphorus is placed together with Tanarctus sequences within a maximum supported Tanarctidae. Arthrotardigrada is inferred to be paraphyletic. Posterior probabilities (upper value) relating to BI analyses and bootstrap values (lower) from ML analyses are shown at the nodes. (–) indicates bootstrap values <50.
Data from: Next-generation sequencing for rodent barcoding: species identification from fresh, degraded and environmental samples
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