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49 results for “bert”
FIGURE 2 in New isolate of Mononchoides composticola Steel, Moens, Scholaert, Boshoff, Houthoofd & Bert, 2011 (Nematoda: Neodiplogasteridae) from Iran
FIGURE 2. Mononchoides composticola (LM). A–C: Female stoma in left, median and right views, respectively. D: Female pharynx. E: Male pharynx. F: Male lip region. G: Longitudinal crests at cuticule. H: Female rectum. I, J: Male posterior end at spicules and genital papillae levels, respectively.
FIGURE 1 in New isolate of Mononchoides composticola Steel, Moens, Scholaert, Boshoff, Houthoofd & Bert, 2011 (Nematoda: Neodiplogasteridae) from Iran
FIGURE 1. Mononchoides composticola Steel, Moens, Scholaert, Boshoff, Houthoofd & Bert, 2011. A: Entire male. B: Entire female. C, D, F: Anterior end at stoma level. E: Neck. G: Female posterior end. H: Longitudinal line at cuticle. I: Female reproductive system. J: Male posterior end. K: Spicules and genital papillae (lateral view).
ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach
<ol> <li>Pretrain data and results for: <ul> <li>Promoter regions for all genes in 127 different cell lines in ROADMAP </li> <li>CRM (<em>cis</em>-regulatory module) regions longer than 2k bps in 127 different cell lines in ROADMAP</li> <li>Whole genome regions without continuous low signal state ("O") in 4-mer</li> </ul> </li> <li>Fine-tuning data and result for: <ul> <li>[Classification] Promoter regions of high-expressed genes (from RPKM>10 to RPKM>50) compared to not expressed genes (RPKM=0) or low-expressed genes (RPKM>0) with the directory names:<br> <ul> <li>not_n_rpkm0 : RPKM=0 vs. RPKM>0</li> <li>not_n_rpkm10 : RPKM=0 vs. RPKM>10</li> <li>not_n_rpkm20 : RPKM=0 vs. RPKM>20 </li> <li>not_n_rpkm30 : RPKM=0 vs. RPKM>30 </li> <li>not_n_rpkm50 : RPKM=0 vs. RPKM>50 </li> <li>rpkm0_n_rpkm10 : RPKM>0 vs. RPKM>10 </li> <li>rpkm0_n_rpkm20 : RPKM>0 vs. RPKM>20 </li> <li>rpkm0_n_rpkm30 : RPKM>0 vs. RPKM>30 </li> <li>rpkm0_n_rpkm50 : RPKM>0 vs. RPKM>50 </li> <li>rpkm10_n_rpkm20 : RPKM>10 vs. RPKM>20 </li> <li>rpkm10_n_rpkm30 : RPKM>10 vs. RPKM>30 </li> <li>rpkm10_n_rpkm50 : RPKM>10 vs. RPKM>50 </li> <li>rpkm20_n_rpkm30 : RPKM>20 vs. RPKM>30 </li> <li>rpkm20_n_rpkm50 : RPKM>20 vs. RPKM>50 </li> <li>rpkm30_n_rpkm50 : RPKM>30 vs. RPKM>50 </li> </ul> </li> <li>[Regression] Quantitative gene expression prediction for promoter regions</li> <li>CRM regions longer than 2k bps compared to non-CRM regions</li> </ul> </li> </ol>
FIGURE 5 in Two rare species of tylenchids, Discotylenchus biannulatus n. sp. and Labrys chinensis Qing & Bert, 2018 (Nematoda: Tylenchidae) from western Iran
FIGURE 5. Light microphotographs of Iranian population of Labrys chinensis Qing & Bert, 2018. A: Female pharyngeal region; B: Female reproductive system; C: Female cephalic region; D: Female, longitudinal amphidial aperture; E: Male cloacal region; F; Female tail terminus; G: Male spicule and gubernaculum; H: Female lateral field at mid-body. (Scale bars = 10 µm).
FIGURE 2 in Two rare species of tylenchids, Discotylenchus biannulatus n. sp. and Labrys chinensis Qing & Bert, 2018 (Nematoda: Tylenchidae) from western Iran
FIGURE 2. Light microphotographs of Discotylenchus biannulatus n. sp. Female. A: Pharyngeal region; B: Reproductive system; C&D: Lip region; E: Corpus region; F: Tail terminus; G: Lateral field at mid-body. (Scale bars = 10 µm).
FIGURE 4 in Two rare species of tylenchids, Discotylenchus biannulatus n. sp. and Labrys chinensis Qing & Bert, 2018 (Nematoda: Tylenchidae) from western Iran
FIGURE 4. Iranian population of Labrys chinensis Qing & Bert, 2018. A: Entire female; B: Entire male; C: Female, pharyngeal region; D: Female, reproductive system; E: Female, cephalic region; F: Female, lateral field at mid-body; G: Male tail; H&I: Female tail.
FIGURE 1. Discotylenchus biannulatus n in Two rare species of tylenchids, Discotylenchus biannulatus n. sp. and Labrys chinensis Qing & Bert, 2018 (Nematoda: Tylenchidae) from western Iran
FIGURE 1. Discotylenchus biannulatus n. sp. Female. A&B: Pharyngeal region; C: Lip region; D: Entire body; E: Reproductive system; F&G: Tail; H: Lateral field at mid-body.
FIGURE 3 in Two rare species of tylenchids, Discotylenchus biannulatus n. sp. and Labrys chinensis Qing & Bert, 2018 (Nematoda: Tylenchidae) from western Iran
FIGURE 3. Scanning electronic microscopy of Discotylenchus biannulatus n. sp. A: Lip region; B: En face view of lip region showing perioral disc; C: Lip region showing longitudinal amphidial aperture and head annuli; D&E: Details of anterior end showing head shape and body annuli; F: Four incisures in lateral field at mid-body; G: Lateral view of anus region; H: Lateral view of vulva. (Scale bars: A–C = 0.5 µm; D, G = 2 µm; E = 5 µm; F, H = 1 µm).
FIGURE 6 in Two rare species of tylenchids, Discotylenchus biannulatus n. sp. and Labrys chinensis Qing & Bert, 2018 (Nematoda: Tylenchidae) from western Iran
FIGURE 6. Scanning electronic microscopy of Iranian population of Labrys chinensis Qing & Bert, 2018. A, B&C: Cephalic region showing amphidial openings, oral plate and disc-like structure; D: Distal region of tail; E: Disc like structure on head; F: Lateral view of vulva region; G: Lateral view of anus; H: Showing two incisures in lateral field at mid-body; I: Tail terminus. (Scale bars: A–C, E = 1 µm; D = 10 µm; F, H, I = 2 µm; G = 5 µm).
ai-matrix BERT_PyTorch
<p>ai-matrix BERT_PyTorch pretrained model, converted from TensorFlow model, <strong>uncased_L-24_H-1024_A-16</strong></p>
BERT-Span dataset
<p>Named entity recognition model and dataset for rehabilitation medicine field</p>
FRASIMED: a Clinical French Annotated Resource Produced through Crosslingual BERT-Based Annotation Projection
<p>The French Annotated Resource with Semantic Information for Medical Entities Detection (FRASIMED) contains 2'051 synthetic clinical cases in French, with 24'037 annotated entities. The dataset contains two subsets:</p> <ul> <li>CANTEMIST-FR: Originally from CANTEMIST (Miranda-Escalada et al. (2020)), it contains 1'301 oncological notes, with 15'978 annotations linked to an ICD-O-3.1 morphology code. Additionally, 15’457 of them are linked to a SNOMED-CT code.</li> <li>DISTEMIST-FR: Originally from DISTEMIST's training set (Miranda-Escalada et al. (2022)), it contains 750 clinical cases, with 8'059 annotations, with 5'132 of them linked to a SNOMED-CT code.</li> </ul> <p><strong>Please, cite us:</strong></p> <p>Zaghir, J., Bjelogrlic, M., Goldman, J.-P., Aananou, S., Gaudet-Blavignac, & Lovis, C. (2023). FRASIMED: a Clinical French Annotated Resource Produced through Crosslingual BERT-Based Annotation Projection. arXiv preprint http://arxiv.org/abs/2309.10770</p>
BERT-assisted behavioral profiling of polysemy: contrastive analysis of HONG in Chinese and RED in English
Open the record for dataset details and reuse information.
Figure 5 from: Topalović O, Moore JF, Janssen T, Bert W, Karssen G (2017) An early record of Meloidogyne fallax from Ireland. ZooKeys 643: 33-52. https://doi.org/10.3897/zookeys.643.11266
Figure 5 - Irish population of Meloidogyne sp. (lateral position) from Ireland from 1965. A female anterior region B male anterior region C male – spicules D anterior region of the second-stage juvenile E–G tail variations in the second-stage juvenile.
Figure 2 from: Topalović O, Moore JF, Janssen T, Bert W, Karssen G (2017) An early record of Meloidogyne fallax from Ireland. ZooKeys 643: 33-52. https://doi.org/10.3897/zookeys.643.11266
Figure 2 - The comparison of tail and hyaline tail terminus shape in second-stage juveniles, lateral position. A an unknown Irish species B type material of Meloidogyne fallax C type material of Meloidogyne chitwoodi D type material of Meloidogyne minor E reference material of Meloidogyne hapla; F reference material of Meloidogyne incognita. Scale bar = 20 µm.
Figure 3 from: Topalović O, Moore JF, Janssen T, Bert W, Karssen G (2017) An early record of Meloidogyne fallax from Ireland. ZooKeys 643: 33-52. https://doi.org/10.3897/zookeys.643.11266
Figure 3 - The comparison of anterior region in males of populations of observed Meloidogyne species. A an unknown Irish species (ventral position) B type material of Meloidogyne fallax (lateral position); C: type material of Meloidogyne chitwoodi (ventral position) D reference material of Meloidogyne hapla (lateral position) E reference material of Meloidogyne incognita (lateral position) F type material of Meloidogyne minor (lateral position). Scale bar = 20 µm.
Figure 1 from: Topalović O, Moore JF, Janssen T, Bert W, Karssen G (2017) An early record of Meloidogyne fallax from Ireland. ZooKeys 643: 33-52. https://doi.org/10.3897/zookeys.643.11266
Figure 1 - Comparison of perineal patterns in females. A Irish unknown Meloidogyne sp. B type material of Meloidogyne fallax; C type material of Meloidogyne chitwoodi D type material of Meloidogyne minor. Scale bar = 20 µm.
Figure 2 from: Getaneh G, Bert W, Decraemer W (2015) First report, morphological and molecular characterization of Xiphinema elongatum and X. pachtaicum (Nematoda, Longidoridae) from Ethiopia. ZooKeys 489: 1-13. https://doi.org/10.3897/zookeys.489.8629
Figure 2 - Phylogenetic relationships within Xiphinema species by Bayesian 50% majority rule consensus trees as inferred from 18S rRNA gene sequence alignments under the GTR + I + G model.
Figure 1 from: Getaneh G, Bert W, Decraemer W (2015) First report, morphological and molecular characterization of Xiphinema elongatum and X. pachtaicum (Nematoda, Longidoridae) from Ethiopia. ZooKeys 489: 1-13. https://doi.org/10.3897/zookeys.489.8629
Figure 1 - Photomicrographs of Xiphinema elongatum and Xiphinema pachtaicum. A, C, D, H Body habitus, head region, entire female reproductive part, tail region of Xiphinema elongatum respectively B, E, F, G Body habitus, head region; female reproductive part and tail part of Xiphinema pachtaicum respectively. A = 250 µm; B = 100 µm; D, F = 50 µm; C, E, G, H = 25 µm
BERT Visualisation
<p>Additional BERT Visualisation</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.