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36 results for “consortia”
Siderophore-mediated interactions determine the disease suppressiveness of microbial consortia
<p>Interactions between plant pathogens and root-associated microbes play an important role in determining disease outcomes. While several studies have suggested that steering these interactions may improve plant health, such approaches have remained challenging in practice. Because of low iron availability in most soils, competition for iron via secreted siderophore molecules might influence microbial interaction outcomes.Here we tested if bacterial interactions mediated by iron-scavenging siderophores can be used to predict the disease suppressiveness of microbial consortia against soil-borne <i>Ralstonia solanacearum</i> bacterial pathogen in tomato rhizosphere. Iron availability significantly affected the interactions within inoculated consortia and between the consortia and the pathogen. We observed contrasting effects of siderophores and other non-siderophore metabolites on the pathogen growth, while the siderophore effects were relatively much stronger. Specifically, disease incidence was reduced <i>in vivo </i>when the inoculated consortia produced siderophores that the pathogen could not use for its own growth. Employing siderophore-mediated interactions to engineer functionally robust microbial inoculants show promise in protecting plants from soil-borne pathogens.</p>
Infrastructure Networks within NFDI: Survey among Institutions partnering with NFDI consortia
<p>This dataset is part of Base4NFDI's proposal to acquire funding for developing NFDI-wide basic services.</p> <p>Base4NFDI rolled out a survey to quantitatively illustrate the extent of its ties to German and international infrastructures, particularly in the area of computing. The survey - Infrastructure Networks within NFDI - ran based on a Google Form. The cleaned and anonymized dataset lists these infrastructure ties for 113 unique institutions and has a total of 163 entries as some institutions are partners to multiple consortia. The dataset does not cover all 200+ member institutions of the NFDI Association.</p> <p> </p>
Fig. 2 in The Robin, Erithacus Rubecula (Passeriformes, Turdidae), As A Component Of Heterotrophic Consortia Of Forest Cenoses, Northeast Ukraine. Part 2
Fig. 2. Distribution of the robin nidicolous fauna per trophic groups, total for all areas (A — percentage of the total number of species; B — percentage of the total number of registered food items).
Siderophore-mediated interactions determine the disease suppressiveness of microbial consortia
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Next Generation Metatranscriptome Sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia
GEO Series GSE49830. mixed culture KAZ_0815. 3 samples. Type: Expression profiling by high throughput sequencing.
Unraveling the roles of coastal bacterial consortia in degradation of various lignocellulosic substrates
<p>Lignocellulose, as the abundant natural organic carbon on earth, plays a key role in regulating the global carbon cycle, but there are only few studies in marine ecosystems. Little information is available about the extant lignin-degrading bacteria in coastal wetlands, limiting our understanding of their ecological roles and traits in lignocellulose degradation. We utilized<em> in situ </em>lignocellulose enrichment experiments coupled with 16S rRNA amplicon and shotgun metagenomics sequencing to identify and characterize bacterial consortia attributed to different lignin/lignocellulosic substrates in the southern-east intertidal zone of East China Sea. We found the consortia enriched on woody lignocellulose showed higher diversity than those on the herbaceous substrate. The substrate-dependent taxonomic groups were, hence, revealed. A time-dissimilarity pattern with increased alpha diversity over time was observed. Additionally, this study showed a comprehensive set of genes associated with lignin degradation potential, containing 23 gene families involved in lignin depolymerization, and 371 gene families involved in aerobic/anaerobic lignin-derived aromatic compound pathways, challenging the traditional view of lignin stability within marine ecosystems. In contrast to similar cellulase genes among the lignocellulose substrates, the significantly different ligninolytic gene groups were observed between consortia under woody and herbaceous substrates. Importantly, we not only observed synergistic degradation of lignin and hemi-/cellulose, but also pinpointed the potential biological actors at the levels of taxa and functional genes, which indicates that the alternation of aerobic and anaerobic catabolism could facilitate lignocellulose degradation. Our study advances the understanding of coastal bacterial community assembly and metabolic potential for lignocellulose substrates.</p>
Data from: Implementation of complex biological logic circuits using spatially distributed multicellular consortia
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Ecologically designed three-member microbial consortia promote growth in Brassicaceae members by modulating growth-defense tradeoff
GEO Series GSE285600. Brassica rapa subsp. chinensis. 24 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq Analysis to confirm Different Transcriptomic Profiles of Soil-Derived Functional Module Consortia.
GEO Series GSE143587. soil metagenome. 15 samples. Type: Expression profiling by high throughput sequencing.
SDIMO gene analysis of two 1,4-dioxane degrading consortia enriched from uncontaminated soils
GEO Series GSE97757. 1,4-dioxane-degrading enrichment culture. 4 samples. Type: Other.
Microbial community analyses of two 1,4-dioxane degrading consortia enriched from uncontaminated soils [16s rRNA]
GEO Series GSE97756. 1,4-dioxane-degrading enrichment culture. 4 samples. Type: Other.
Microbial community and SDIMO analyses of two 1,4-dioxane degrading consortia
GEO Series GSE97758. 1,4-dioxane-degrading enrichment culture. 8 samples. Type: Other.
Probiotic consortia improve anti-viral immunity to SARS-CoV-2 in Ferrets
GEO Series GSE180391. Mustela putorius furo; Homo sapiens. 181 samples. Type: Expression profiling by high throughput sequencing; Expression profiling by RT-PCR.
Probiotic consortia improve anti-viral immunity to SARS-CoV-2 in Ferrets [RNA-seq]
GEO Series GSE180389. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing.
Host-aware RNA-based control of microbial consortia
<p>Plasmid maps are provided as Genbank files.</p>
Probiotic consortia improve anti-viral immunity to SARS-CoV-2 in Ferrets [RT-PCR]
GEO Series GSE180390. Mustela putorius furo. 143 samples. Type: Expression profiling by RT-PCR.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.