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Dataset results
44 results for “contact model”
Data from: A new method to scan genomes for introgression in a secondary contact model
Secondary contact between divergent populations or incipient species may result in the exchange and introgression of genomic material. We develop a simple DNA sequence measure, called Gmin, which is designed to identify genomic regions experiencing introgression in a secondary contact model. Gmin is defined as the ratio of the minimum between-population number of nucleotide differences in a genomic window to the average number of between-population differences. Although it is conceptually simple, one advantage of Gmin is that it is computationally inexpensive relative to model-based methods for detecting gene flow and it scales easily to the level of whole-genome analysis. We compare the sensitivity and specificity of Gmin to those of the widely used index of population differentiation, FST, and suggest a simple statistical test for identifying genomic outliers. Extensive computer simulations demonstrate that Gmin has both greater sensitivity and specificity for detecting recent introgression than does FST. Furthermore, we find that the sensitivity of Gmin is robust with respect to both the population mutation and recombination rates. Finally, a scan of Gmin across the X chromosome of Drosophila melanogaster identifies candidate regions of introgression between sub-Saharan African and cosmopolitan populations that were previously missed by other methods. These results show that Gmin is a biologically straightforward, yet powerful, alternative to FST, as well as to more computationally intensive model-based methods for detecting gene flow.
Figures and tables with datasets in "A wind-induced snow redistribution study considering contact based on a bidirectional coupled model of wind and discrete snow particles"
Open the record for dataset details and reuse information.
Geometry of contact: contact planning for multi-legged robots via spin models duality
<p>SI video</p>
Performance Validation of a Non-contact Breathing Frequency Monitor (Model BM07)
ClinicalTrials.gov study NCT01319396. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Data from: A new method to scan genomes for introgression in a secondary contact model
Open the record for dataset details and reuse information.
Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations [RNA-Seq human]
GEO Series GSE118843. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations
GEO Series GSE118912. Homo sapiens; Mus musculus. 46 samples. Type: Expression profiling by high throughput sequencing; Other.
Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions
GEO Series GSE240435. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Transcriptional profiling of irritant contact dermatitis (ICD) in a mouse model identifies specific patterns of gene expression and immune-regulation
GEO Series GSE95317. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations [RNA-Seq mouse]
GEO Series GSE118878. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Inlists for paper: Simulating a stellar contact binary merger – I. Stellar models
<p>We study the initial conditions of a common envelope (CE) event resulting in a stellar merger. A merger’s dynamics could be understood through its light curve, but no synthetic light curve has yet been created for the full evolution. Using the smoothed particle hydrodynamics (SPH) code StarSmasher, we have created three-dimensional (3D) models of a 1.52 M<sub>⊙</sub> star that is a plausible donor in the V1309 Sco progenitor. The integrated total energy profiles of our 3D models match their initial one-dimensional (1D) models to within a 0.1 per cent difference in the top 0.1 M<sub>⊙</sub> of their envelopes. We have introduced a new method for obtaining radiative flux by linking intrinsically optically thick SPH particles to a single stellar envelope solution from a set of unique solutions. For the first time, we calculated our 3D models’ effective temperatures to within a few per cent of the initial 1D models, and found a corresponding improvement in luminosity by a factor of ≳10<sup>6</sup> compared to ray tracing. We let our highest resolution 3D model undergo Roche lobe overflow with a 0.16 M<sub>⊙</sub> point-mass accretor (<em>P</em> ≃ 1.6 d) and found a bolometric magnitude variability amplitude of ∼0.3 – comparable to that of the V1309 Sco progenitor. Our 3D models are, in the top 0.1 M<sub>⊙</sub> of the envelope and in terms of total energy, the most accurate models so far of the V1309 Sco donor star. A dynamical simulation that uses the initial conditions we presented in this paper can be used to create the first ever synthetic CE evolution light curve.</p>
Data generated by our developed theoretical asperity contact creep model
<p>The uploaded data was generated by our developed theoretical asperity contact creep model of interfacial friction for Geomaterials, including excel-style data and origin-style data.</p>
Adding Motion to Contact: A New Model for Low-cost Family Centered Very-early Onset Intervention in Very Preterm-born Infants
ClinicalTrials.gov study NCT05542108. IPD Sharing: NO. Countries: 1. Publications: 0.
Using a Contact Dermatitis Model With Biologic Medications to Study Skin Inflammation
ClinicalTrials.gov study NCT05535738. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Assessment of Niacinamide Cosmetic Product Efficacy in Model of Irritant Contact Dermatitis
ClinicalTrials.gov study NCT06331390. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations [in situ Hi-C]
GEO Series GSE118911. Mus musculus. 4 samples. Type: Other.
Inhibition of DYRK1B suppresses inflammation in allergic contact dermatitis model and Th1/Th17 immune response
GEO Series GSE215457. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modelling
GEO Series GSE123552. Homo sapiens. 10 samples. Type: Other.
Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations [ATAC-Seq]
GEO Series GSE124191. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Effectiveness of the TB Contact Priority Model
ClinicalTrials.gov study NCT00149448. IPD Sharing: Not stated. Countries: 0. Publications: 0.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.