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689 results for “crystals”

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zenodo44/100

Quantification of 3D spatial correlations between state variables and distances to the grain boundary network in full-field crystal plasticity spectral method simulations

<p>This repository provides supplementary material to our paper: <a href="https://doi.org/10.1088/1361-651X/ab7f8c">https://doi.org/10.1088/1361-651X/ab7f8c</a></p> <p><strong>DAMASKPhenoPowerLaw75x75x75TestCase.zip</strong><br> An exemplary DAMASK simulation and corresponding output, generated from DAMASK v2.0.3. We used this to debug more productively the implementation of the post-processing tools. Furthermore we employed this simulation in the paper to identify why the graph clustering grain reconstruction method in many cases fuses neighboring grains in similar orientation.</p> <p><strong>DAMASKPhenoPowerLaw256x256x256ProductionRun.zip</strong><br> All input to run the DAMASK simulation that we discussed in the paper.</p> <p><strong>DAMASKPDTSettings256x256x256ProductionRun.zip</strong><br> All damaskpdt settings files to execute the individual post-processing studies of the paper.</p> <p><strong>DAMASKPDTSlurmSubmissionScripts256x256x256ProductionRun.zip</strong><br> All SLURM scripts we used to execute the compilation of damaskpdt and post-processing on TALOS.</p> <p><strong>DAMASKPDTSlurmLogs256x256x256ProductionRun.zip</strong><br> All logs from the SLURM job management system from the individual post-processing runs.</p> <p><strong>DAMASKPDTSourceCode_USedForAnalyticalDistanceToVoronoiCellFacets.zip</strong><br> The source code to the tool we developed during the revision process of our paper to verify the methods<br> via computing analytically exact distances to the facets of the Poisson-Voronoi tessellation from the<br> DAMASK microstructure instantiation.<br> <br> <strong>DAMASKPDTSourceCode_Production.zip</strong><br> The source code we used to post-process all results from the DAMASK simulations.</p> <p><strong>GitHub repository:</strong><br> https://github.com/mkuehbach/damaskpdt</p>

opengpl-2.0Mar 2020View details →
zenodo44/100

X-ray diffraction images of bovine trypsin crystals recorded at the FemtoMAX beamline of Max IV synchrotron facility

<p>The deposition concerns bovine trypsin diffraction images in two wedges. Each image is&nbsp;recorded on a still crystal and&nbsp;separated by 0.1 deg rotation. The x4.tar.gz archive contains summed intensities from individual snapshots at the same orientation, whereas&nbsp;x4_single.tar.gz archive contains single snapshots/orientation.&nbsp;</p>

opencc-by-4.0Nov 2020View details →
zenodo44/100

Diffraction images of crystals of the first and second spectrin repeats (mutant C420A/C435A) of human plectin (PDB code 2ODV)

<p>Diffraction images of a native crystals of a fragment of human plectin that includes the first and second spectrin repeats (SR1-SR2) of the plakin domain. The two Cys in the wild type sequence were replaced by Ala.</p> <p>Images correspond to the dataset used to refine the pdb entry 2ODV (http://www.rcsb.org/pdb/explore/explore.do?structureId=2ODV).</p> <p>&nbsp;</p> <p>Data was collected at the BM14 beamline of the European Synchrotron Radiation Facility (ESRF, Grenoble, France) using radiation of 0.9785 &Aring; wavelength and a Mar CCD detector. The dataset consists of 360 images (1 degree oscillation per image). Data extend to ~1.85 &Aring; resolution.</p>

opencc-by-sa-4.0Mar 2016View details →
zenodo44/100

Diffraction images of crystals of the Calx-beta domain of integrin beta4 (PDB code 3FQ4)

<p>Diffraction images of native crystals of the Calx-&beta; domain<br> of the human integrin &beta;4 subunit. Images correspond to the dataset used to solve and refine the pdb entry&nbsp;3FQ4 (http://www.rcsb.org/pdb/explore/explore.do?structureId=3FQ4).</p> <p>Data was collected using a rotating anode generator (MicrostarH, Bruker AXS) and a mar345dtb image plate detector (marXperts GmbH). The dataset consists of 360 images (1 degree oscillation per image). Data extend to 1.48 &Aring; resolution.</p>

opencc-by-sa-4.0Nov 2015View details →
zenodo44/100

Diffraction images of a crystal of the spectrin repeats 7, 8, and 9 (SR7-SR9) of the plakin domain of human plectin (PDB code 5J1I)

<p>Diffraction images of crystals of a fragment of the plakin domain of human plectin that includes the spectrin repeats 7 to 9 (SR7-SR9).</p> <p>Images correspond to the dataset used to solve and refine the pdb entry 5J1I (http://www.rcsb.org/pdb/explore/explore.do?structureId=5J1I).</p> <p>Data were collected on a single crystal at the beamline 14.2 of the European Synchrotron Radiation Facility (ESRF, Grenoble, France) using radiation of 0.9330 &Aring; wavelength and an ADSC Q4 CCD detector. The dataset consists of 360 images (1 degree oscillation per image).</p> <p>Diffraction data is highly anisotropic. Based on analysis with the STARANISO server (http://staraniso.globalphasing.org/) data extend approximately to 5.0, 3.8, and 2.6 &Aring; resolution along the three principal directions of anisotropy, which are 0.555 a*+ 0.832 c*, b*, and -0.361 a* + 0.932 c*, respectively.</p>

opencc-by-sa-4.0Jun 2017View details →
zenodo44/100

Diffraction images of crystals of the spectrin repeats 7 and 8 (SR7-SR8) of the plakin domain of human plectin (PDB code 5J1G): native and Hg-derivative datasets for phasing by SIRAS

<p>Diffraction images of crystals of a fragment of the plakin domain of human plectin that includes the spectrin repeats 7 to 8 (SR7-SR8).</p> <p>Images correspond to the dataset used to solve and refine the pdb entry <strong>5J1G</strong> (http://www.rcsb.org/pdb/explore/explore.do?structureId=5J1G).</p> <p> </p> <p>The structure was phase by single isomorphous replacement with anomalous scattering (SIRAS) using two datasets: one from a native crystal and another one from a crystal derivatized with the mercurial compound ethylmercurithiosalicylate (EMTS).</p> <p> </p> <p>The <strong>Native dataset</strong> was collected on a single crystal at the beamline XALOC of the ALBA Synchrotron (Barcelona, Spain) using radiation of 0.9792 Å wavelength and a PILATUS 6M detector. The dataset consists of 4 wedges of 450 images each (0.2º oscillation per image). Each wedge was collected at a different position of the same crystal. The crystals belong to the space group P2<sub>1</sub> with approximate cell dimensions <em>a</em>=45.7 Å, <em>b</em>=115.9 Å, <em>c</em>=64.8 Å, beta=97.6 º.</p> <p> </p> <p>The data from a <strong>mercurial derivative</strong> (EMTS) was collected in house using a rotating anode X-ray generator (wavelength 1.54179 Å) and a mar345 image plate detector. The dataset consists of 360 images (1º oscillation per image). The crystal was isomorphic to the native crystal.</p> <p> </p> <p>In addition to the diffraction images the following files are included:</p> <p>a) Files for indexing with the program XDS and the HKL files containing the integrated intensities.</p> <p>b) Files for scaling using the program xscale (directory XSCALE_5J1G_Native_EMTS).<br> c) The directory “phasing_shelx” contains hkl files of the intensities of the native and EMTS datasets in a format suitable for analysis with Shelx. This directory also contains the files of the phasing by SIRAS using Shelx C/D/E.</p>

opencc-by-sa-4.0Jun 2017View details →
zenodo44/100

Dataset for "Reconfigurable Magnonic Crystals Based on Imprinted Magnetization Textures in Hard and Soft Dipolar-Coupled Bilayers"

<p>The dataset consist of the data of the numerical simulations used to prepare the figures for the manuscript:&nbsp;</p><p>Krzysztof Szulc, Silvia Tacchi, Aurelio Hierro-Rodríguez, Javier Díaz, Paweł Gruszecki, Piotr Graczyk, Carlos Quirós, Daniel Markó, José Ignacio Martín, María Vélez, David S. Schmool, Giovanni Carlotti, Maciej Krawczyk, and Luis Manuel Álvarez-Prado. <i>Reconfigurable Magnonic Crystals Based on Imprinted Magnetization Textures in Hard and Soft Dipolar-Coupled Bilayers</i>. ACS Nano <strong>2022</strong> <i>16</i> (9), 14168-14177.</p><p>Please read README.txt file to see the description of the data in the files.</p>

opencc-by-4.0Oct 2023View details →
zenodo44/100

Insights in the structural hierarchy of statically crystallized palm oil

<p>This dataset contains all data obtained on palm oil samples and used in the publication "Insights in the structural hierarchy of statically crystallized palm oil". See paper for more information on the methods for obtaining the data.</p> <p>&nbsp;</p> <p>Abbreviations used:</p> <p>PO = palm oil</p> <p>PPP = tripalmitin</p> <p>I = intensity (in X-ray scattering)</p> <p>q = scattering vector (in X-ray scattering)</p> <p>SEM = Scanning Electron Microscopy</p> <p>DSC = Differential Scanning Calorimetry</p> <p>WAXS = Wide Angle X-ray Scattering</p> <p>SAXS = Small Angle X-ray Scattering</p> <p>USAXS = Ultra Small Angle X-ray Scattering</p> <p>PLM = Polarized Light Microscopy</p> <p>FC = fast cooling = 20&deg;C/min</p> <p>SC = slow cooling = 1&deg;C/min</p> <p>TAG = triglyceride</p> <p>FA = fatty acid</p>

opencc-by-4.0Dec 2023View details →
zenodo44/100

Multifunctional blazed gratings for multiband spatial filtering, retroreflection, splitting, and demultiplexing based on C2 symmetric photonic crystals

<p>These datafiles were generated by MATLAB to create a part of the figures in the paper.</p> <p>The work supported partially by the Narodowe Centrum Nauki (projects nos UMO-2015/17/B/ST3/00118 and UMO-2020/39/I/ST3/02413), TUBITAK (Program No. 2221), and projects UBACyT 20020150100028BA, UBACyT 20020190100108BA and CONICET PIP 11220170100633CO.</p> <p>&nbsp;</p>

opencc-by-4.0Jun 2022View details →
zenodo44/100

Data from: The effect of probe density coverage on the detection of oenological tannins in quartz crystal microbalance with dissipation monitoring (QCM-D) experiments

<p>Polyphenols, crucial compounds in grapes, musts, and wines, influence grape ripening, must fermentation, and final wine quality. Current detection methods for polyphenols are expensive, time-consuming, and reliant on specialized laboratories and personnel. This study proposes the use of a functionalized acoustic sensor to address these limitations and efficiently detect oenological polyphenols.</p> <p>The method employs a quartz crystal microbalance with dissipation monitoring (QCM-D) combined with a gelatin-based probe layer to detect the target analyte. The sensor is functionalized by optimizing probe coverage density, accomplished through the use of 12-mercaptododecanoic acid (12-MCA) for probe immobilization onto the gold sensor surface, along with dithiothreitol (DTT) as a reducing and competitive binding agent. Varying concentrations of 12-MCA and DTT allow for control over probe density, with QCM-D measurements demonstrating effective adjustment, ranging from 0.2 &times; 10^13 to 2 &times; 10^13 molecules cm^&minus;2. The study also explores the interaction between the probe and tannins, confirming the ability of the sensor to detect them. Notably, lower probe coverage yields higher detection signals when normalized to probe immobilization signals. Additionally, significant alterations in the mechanical properties of the functionalization layer occur after interaction with samples.</p> <p>Combining QCM-D with gelatin functionalization presents promising applications in the wine industry. This approach enables real-time monitoring, requires minimal sample preparation, and offers high sensitivity for quality control purposes.</p>

opencc-by-4.0Dec 2023View details →
zenodo44/100

Supporting information of paper "Direct Laser Writing of Liquid Crystal Elastomers Oriented by a Horizontal Electric Field"

<p>This dataset contains&nbsp;the <em>underlying data </em>and the <em>extended data </em>for the paper&nbsp;&ldquo;Direct Laser Writing of Liquid Crystal Elastomers Oriented by a Horizontal Electric Field&rdquo;, submitted&nbsp;&nbsp;for consideration and open review in Open Research Europe.</p> <p>In the follow the description of the files is reported:</p> <p><strong>Underlying_data_Surce_Images.zip</strong>&nbsp;It contains the source original microscopy image&nbsp;files used for assembling final paper Figures (1-5), enclosed in the main text. List and pictures&#39; information are reported in the file &quot;Source Picture Description.txt&quot;&nbsp;included in the zip.</p> <p><strong>SIVideo_LCAlignment.avi&nbsp;</strong>- [Supporting VideoZ1] showing the response of the unpolymerized mesogens to an electric field of 1.7 V/&micro;m</p> <p><strong>SIVideo_NailActuation.wmv</strong>&nbsp;- [Supporting VideoZ2] showing the thermally activated actuation of a LCE nail microstructure upon several rt-75 &deg;C cycles.</p> <p><strong>SIVideo_SimulationCube.gif</strong>&nbsp;- [Supporting VideoZ3] Video showing a simulation of the actuation of a LCE microcube upon heating.</p> <p><strong>SIVideo_SimuulationNail.gif</strong>&nbsp;- [Supporting VideoZ4] - Video showing a simulation of the actuation of a LCE micronail upon heating.</p> <p><strong>ImageZ1.png -&nbsp;</strong>[Supporting Figure Z1] Simulation of the distribution of the electric field generated by flat electrode, view along the plane (cross section) with magnification of the central part of the working field.</p> <p><strong>ImageZ2.png</strong>&nbsp;- [Supporting Figure Z2] - Photographs and thermal images of a LCE film obtained using a resin formulation identical to that employed in DLW on identical substrates that show the thermal response.&nbsp;Top: photograph of LCE films obtained by UV polymerization of a 7:3 LC-MA:LC-DA mixture over interdigitated flat ITO electrodes with an applied DC voltage. Upon heating with an infrared lamp (right column) the film bends and shortens. Middle: images acquired with a thermocamera highlighting the actuation temperature. Bottom: control LCE film polymerized as casted (without electric field).</p> <p><strong>ImageZ3.png</strong>&nbsp;- [Supporting Figure Z3] - a) Optical microscopy images of a double-cantilever acquired through perpendicularly oriented polarizes placed at 45&deg; with respect to the applied electric field. b) Example of thermally responsive actuation via a comparison of images recorded at room temperature (upper) and at 70 &deg;C (bottom).</p> <p><strong>Simulations.zip -&nbsp;</strong>Comsol (Version 5.6) source simulation files for&nbsp;LCE microcube and&nbsp;LCE micronail upon heating, and for the electric field&nbsp;electric generated by flat electrode in experimental conditions. Complete Report file in PDF is also available, containing all the parameters and equations&nbsp;used for simulation. Finally, the simulation results are provided as text .csv files.</p> <p><strong>Files_Blender_LCE.zip</strong>&nbsp;- Blender (Version 2.93) source file (&ldquo;.blend&rdquo;) for microstructure fabrication and generated surface &ldquo;.stl&rdquo; files, including cube, nail, cantilever and pyramid geometries.</p> <p><strong>Cube Describe.zip </strong>- Example of DeScribe software output files containing all needed parameters used for printing cubes, generated starting from &ldquo;cube.stl&rdquo; file. Other geometries have been realised using the same writing parameters starting from appropriate &ldquo;.stl&rdquo; file.</p>

opencc-by-4.0Sep 2021View details →
zenodo44/100

Data set of article entitled: "Impact of the interfacial Dzyaloshinskii-Moriya interaction on the band structure of one-dimensional artificial magnonic crystals: A micromagnetic study"

<p>Data set of the immagies showed in figure 3 of the article entiteled &quot;Impact of the interfacial Dzyaloshinskii-Moriya interaction on the band structure of one-dimensional artificial magnonic crystals: A micromagnetic study&quot;. All files contain the matrix of the dispersion relations of the two analysed Magnonic Crystals: the SAMPLE A and the SAMPLE B for different value of the interfacial Dzyaloshinskii-Moriya interaction (constant D). The first row is the set of values of k-vector, while the first column is the set of value of the frequencies. The other elements of the matrix are the values of the pixel related to the first row and first column. These elements are been obtanied by the Fast Fourier Transform in time and space of the micromagnetic simulations .</p>

opencc-by-4.0Dec 2021View details →
zenodo44/100

Single-crystal X-ray diffractometry data for a sample of [Cu(HF₂)(pyrazine)₂]PF₆ collected on beamline I19-2 at Diamond Light Source

<p>Single-crystal X-ray diffractometry data for a sample of [Cu(HF₂)(pyrazine)₂]PF₆.</p> <p>These data were collected at Diamond Light Source, on&nbsp;beamline I19 (experiments hutch 2), on 2022-01-30, and are particularly useful for testing data reduction routines. They are known to produce good merging statistics and final structure refinement.</p> <p>The sample was prepared as follows:<br> Ammonium hexafluorophosphate (NH₄PF₆) (0.310&nbsp;g, 1.9&nbsp;mmol), ammonium hydrogen difluoride ((NH₄)HF₂) (0.109&nbsp;g, 1.9&nbsp;mmol) and pyrazine (C₄H₄N₂) (0.300&nbsp;g, 3.7&nbsp;mmol) were dissolved in 5&nbsp;mL of deionised water. The obtained colourless solution was slowly added to a blue solution of copper(II) nitrate prepared by dissolving copper(II) nitrate hemipentahydrate (Cu(NO₃)₂&nbsp;&middot;&nbsp;2.5(H₂O)) (0.425&nbsp;g, 1.8&nbsp;mmol) in 5&nbsp;mL of deionised water. The solutions were mixed in a plastic beaker at room temperature. The formation of blue crystals of [Cu(HF₂)(pyrazine)₂]PF₆ on the side of the beaker started after few seconds and continued for about 24&nbsp;hours during which the sealed beaker was not moved.</p> <p>The sample was measured at room temperature and the illuminating beam had a wavelength of 0.4859 &Aring; (25.52 keV).</p> <p>Beamline I19-2 at Diamond Light Source, a four-circle &kappa;-geometry diffractometer (see <a href="https://onlinelibrary.wiley.com/doi/10.1107/97809553602060000936">[Kern 2019]</a>) with an undulator source, is described in <a href="https://doi.org/10.1107/S0909049512008801">[Nowell 2012]</a> but has since been upgraded to use a Dectris Eiger2&nbsp;X&nbsp;4M CdTe hybrid photon counting detector. The data are written in the <a href="https://manual.nexusformat.org/classes/applications/NXmx.html">NXmx variant</a> of the <a href="https://www.nexusformat.org/">NeXus format</a>, and so include metadata with a functionally complete description of the diffractometer.</p> <p>Inventory of data:</p> <ul> <li><strong><code>01_CuHF2pyz2PF6b_Phi.tar.xz</code></strong><br> A single 1750-image 350&deg; &phi; rotation scan from -175&deg; to 175&deg; with 0.2&deg; rotation per image, an exposure time of 0.1&nbsp;s per image, &omega;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;0&deg; and 2&theta;&nbsp;=&nbsp;0&deg;.</li> <li><strong><code>02_CuHF2pyz2PF6b_2T.tar.xz</code></strong><br> A single 1750-image 350&deg; &phi; rotation scan from -175&deg; to 175&deg; with 0.2&deg; rotation per image, an exposure time of 0.1&nbsp;s per image, &omega;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;0&deg; and 2&theta;&nbsp;=&nbsp;20&deg;.</li> <li><strong><code>03_CuHF2pyz2PF6b_P_O.tar.xz</code></strong><br> Two sequential rotation scans: <ul> <li><strong><code>CuHF2pyz2PF6b_P_O_01.nxs</code></strong><br> A 1750-image 350&deg; &phi; scan from -175&deg; to 175&deg; with &omega;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;0&deg; and 2&theta;&nbsp;=&nbsp;0&deg;.</li> <li><strong><code>CuHF2pyz2PF6b_P_O_02.nxs</code></strong><br> A 600-image 120&deg; &omega; scan from -125&deg; to -5&deg; with &phi;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;45&deg; and 2&theta;&nbsp;=&nbsp;0&deg;.</li> </ul> Both scans had 0.2&deg; rotation per image and an exposure time of 0.1&nbsp;s per image.</li> </ul> <p>The same sample was used for all these measurements. Throughout, the sample-to-detector distance was 85&nbsp;mm and the beam was attenuated to 0.2% of its full intensity.</p> <p>For each rotation scan, the data comprise a single top-level NXmx-format NeXus file named <code>&lt;filename&gt;.nxs</code>, one or more image files named <code>&lt;filename&gt;_00000n.h5</code>, where <code>n</code> is a numeral, and a single detector metadata file named <code>&lt;filename&gt;_meta.h5</code>. The NeXus file contains an HDF5 virtual data set that links to the data in the image file(s), and several HDF5 external links to data in the detector metadata file.</p> <p>For internal reference of Diamond Light Source staff, these data were collected as part of commissioning visit CM31144-1. Some file names and corresponding HDF5 link targets have been altered from their original names for consistency with the file contents.</p>

opencc-by-4.0Mar 2022View details →
zenodo44/100

Microwave-to-optical conversion with a gallium phosphide photonic crystal cavity

<p>Electrically actuated optomechanical resonators provide a route to quantum-coherent, bidirectional conversion of microwave and optical photons. Such devices could enable optical interconnection of quantum computers based on qubits operating at microwave frequencies. Here we present a platform for microwave-to-optical conversion comprising a photonic crystal cavity made of single-crystal, piezoelectric gallium phosphide integrated on prefabricated niobium circuits on an intrinsic silicon substrate. The devices exploit spatially extended, sideband-resolved mechanical breathing modes at ~3.2 GHz, with vacuum optomechanical coupling rates of up to&nbsp;g<sub>0</sub>/2&pi;&nbsp;&asymp;&nbsp;300 kHz. The mechanical modes are driven by integrated microwave electrodes via the inverse piezoelectric effect. We estimate that the system could achieve an electromechanical coupling rate to a superconducting transmon qubit of ~200 kHz. Our work represents a decisive step towards integration of piezoelectro-optomechanical interfaces with superconducting quantum processors.</p>

opencc-by-4.0Apr 2022View details →
zenodo44/100

Crystallization process of organic-inorganic methylammonium lead bromide perovskite (MAPbBr3), GIXD analysis results: diffraction features and crystal structure

<p>Analysis result of an <em>in-situ</em> measurement of the crystallization process of organic-inorganic methylammonium lead bromide perovskite (MAPbBr3) on a glass substrate.</p> <p>This dataset contains the positions, sizes, and integrated intensities of extracted diffraction peaks with 0.1s time resolution.</p> <p>For crystal structure matching, the provided CIF file (CCDC 1446529) was used.</p>

opencc-by-4.0Aug 2022View details →
zenodo44/100

Atomic coordinates used in the solution of a TDRD2 crystal structure

<p>These coordinates were referred to as "Coordinates from [...] an unpublished TDRD2 crystal structure" in Supporting Information of our manuscript <em>Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2</em>. This model has not been validated for any other use.</p>

opencc-by-4.0Oct 2017View details →
zenodo44/100

Raw data for crystal structure of the flavoprotein monooxygenase TrlE from Streptomyces cyaneofuscatus Soc7, PDB ID: 8RQH

<p>X-Ray raw data for crystal structure of the flavoprotein monooxygenase TrlE from Streptomyces cyaneofuscatus Soc7 (PDB ID: 8RQH). The data have been collected at the Swiss Light Source (2022-11-20) at the X06SA beamline at a wavelength of 1.00003A.</p>

opencc-by-4.0May 2024View details →
zenodo44/100

Stressful crystal histories recorded around melt inclusions in volcanic quartz

<p>Magma ascent and eruption are driven by a set of internally and externally generated stresses that act upon the magma. We present microstructural maps around melt inclusions in quartz crystals from six large rhyolitic eruptions using synchrotron Laue X-ray microdiffraction to quantify elastic residual strain and stress. We measure plastic strain using average diffraction peak width and lattice misorientation, highlighting dislocations and subgrain boundaries. Quartz crystals preserve similar and relatively small magnitudes of elastic residual stress (mean 53-135 MPa, median 46-116 MPa) in comparison to the strength of quartz (~10 GPa). However, the distribution of strain in the lattice around inclusions varies between samples. We hypothesize that dislocation and twin systems may be established during compaction of crystal-rich magma, which affects the magnitude and distribution of preserved elastic strains. Given the lack of stress-free haloes around faceted inclusions, we conclude that most residual strain and stress was imparted after inclusion faceting. Fragmentation may be one of the final strain events that superimposes stresses of ~100 MPa across all studied crystals. Overall, volcanic quartz crystals preserve complex, overprinted deformation textures indicating that quartz crystals have prolonged deformation histories throughout storage, fragmentation, and eruption. The data collected using Laue microdiffraction at Lawrence Berkeley National Laboratory Advanced Light Source beamline 12.3.2 are included below as .xlsx files. Data was processed and analyzed using XMAS (Tamura, 2014) and XtalCAMP (Li et al., 2020).</p>

opencc-by-4.0Dec 2022View details →
zenodo44/100

Dataset for "A simple and accurate method to determine fluid-crystal phase boundaries from direct coexistence simulations"

<p>This is a dataset for the article "A simple and accurate method to determine &nbsp;fluid-crystal phase boundaries from direct coexistence simulations", available at https://arxiv.org/abs/2403.10891&nbsp;&nbsp;&nbsp; (Full citation data will be added upon final publication of the article.)</p> <p>This package provides figure data and representative configuration files associated with the systems studied in the article above. Additionally, for the hard sphere system, this package includes direct coexistence data for all reported system sizes and crystal orientations.</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0May 2024View details →
zenodo44/100

Comparison of X-ray crystal structures of a tetradecamer sequence d(CCCGGGTACCCGGG)2 at 1.7 Å resolution.

<p>We presented a comparison of three different X-ray crystal structures of DNA tetradecamer sequence d(CCCGGGTACCCGGG)2 all at about 1.7 &Aring; resolution. The sequence was designed as an attempt to form a DNA four-way junction with A-type helical arms. However, in the presence of zinc, magnesium, and in the absence of any metal ion, it does not take up the junction structure, but forms an A-type double helix. This allowed us to study possible conformational changes in the double helix due to the presence of metal ions. Upon addition of the zinc ion, there is a change in the space group from P41212 to P41. The overall conformation of the duplex remains the same. There are small changes in the interaction of the metal ions with the DNA. In the zinc-bound structure, there are two zinc ions that show direct interaction with the N7 atoms of terminal G13 bases at either end of the molecule. There are small changes in the interhelical contacts. The consequence of these differences is to break some of the symmetry and change the space group.</p>

opencc-by-4.0Apr 2017View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record