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33 results for “freshwater macroinvertebrates”
Supplementary material 2 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Developed fusion primers for fwh1 and fwh2 on the Illumina high throughput sequencing platform.
Supplementary material 11 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Proportion of shared reads between the two replicates for DceM amplified with the fwh1 primer set.
Supplementary material 10 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
OTU table for the 52 taxa mock samples sequenced with the fwh1 and fwh2 primer set.
Supplementary material 1 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Primers evaluated in this study
Supplementary material 5 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Overview of the macroinvertebrates composition of the three sample sites in Romania.
Supplementary material 12 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Sample composition of Romanian macroinvertebrate samples.
Supplementary material 9 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Number of raw sequences obtained for each sample after demultiplexing.
Supplementary material 7 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Gradient PCR optimisation for the fwh primer sets.
Supplementary material 6 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Overview of used tagging combinations for sample multiplexing for sequencing.
Supplementary material 4 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Overview of the three Romanian macrozoobenthos sampling sites (Z2, L2, R2).
Supplementary material 1 from: Beentjes KK, Speksnijder AGCL, Schilthuizen M, Schaub BEM, van der Hoorn BB (2018) The influence of macroinvertebrate abundance on the assessment of freshwater quality in The Netherlands. Metabarcoding and Metagenomics 2: e26744. https://doi.org/10.3897/mbmg.2.26744
Monitoring event details and EQR scores :
Figure 1 in Freshwater macroinvertebrates of Lord Howe Island
Figure 1. Map of study sites. Numbers refer to specific sites labelled in Table 1.
Data and code for lower bound of rare species ratio of European freshwater macroinvertebrates
<p><span>The phrase "Rare species are common" is widely recognized, but quantifying how common rare species are—specifically, their ratio—remains an area requiring further exploration. In this study, we present an analysis using community data of European freshwater macroinvertebrates to establish a lower bound for the ratio of rare species. By leveraging the Hill numbers framework, where "q = 0" estimates the total number of rare and <a name="_Hlk168861522"></a>common species and "q = 1" estimates the number of common species, we calculated the lower bound of the rare species ratio as 1 - (the ratio of common species number to the observed species richness). Our analysis included data from 19,649 communities (site-year pairs) with species counts exceeding three, yielding an average rare species ratio of 67.75%, with the 10th and 90th percentiles being 47.16% and 85.33%, respectively. Recognizing that community surveys often underrepresent rare species, we acknowledge that the observed species count is an underestimate of the total species richness. Consequently, we stress that our calculated ratio is a lower bound, indicating that rare species are likely even more common than our findings suggest.</span></p>
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.