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FIGURE 8 in Filling in a biogeographic gap: the first Trichomycteridae from the Parnaíba River basin (Siluriformes: Trichomycteridae)
FIGURE 8 | Gill arches of Ituglanis crispim, paratype, MZUSP 126756, 29.7 mm SL (c&s). Dorsal view. Abbreviations: basibranchials 2 to 4 (BB2–4); ceratobranchials 1 to 3 (CB1–3); epibranchials 1 to 4 (EB1–4); hypobranchials 1 to 3 (HB1–3); pharyngobranchial 3 (PB3). Ceratobranchials 4 and 5 (CB4–5), and upper pharyngeal tooth plate (TP) damaged and partly missing. Scale bar = 0.5 mm.
FIGURE 5 in Filling in a biogeographic gap: the first Trichomycteridae from the Parnaíba River basin (Siluriformes: Trichomycteridae)
FIGURE 5 | Suspensorium and opercular apparatus of Ituglanis crispim, paratype, MZUSP 126756, 29.7 mm SL (c&s). Lateral view. Abbreviations: metapterygoid (MT); quadrate (QU); preopercle (PO); interopercle (IO); opercle (OP); hyomandibula (HY); dentary (DE), and anguloarticular (AA). Image from right side, inverted to conform to standard position. Scale bar = 0.5 mm.
FIGURE 3 in Filling in a biogeographic gap: the first Trichomycteridae from the Parnaíba River basin (Siluriformes: Trichomycteridae)
FIGURE 3 | Neurocranium and related structures of Ituglanis crispim, paratype, MZUSP 126756, 29.7 mm SL (c&s). A. Dorsal and B. Ventral views. Abbreviations: mesethmoid (ME); premaxilla maxilla (PMX); maxilla (MX); anterior fontanel (AF); autopalatine (AP); frontal (FR); barbular (BA); parieto-supraoccipital (SU); orbitosphenoid (OS); posterior fontanel (PF); lateral ethmoid (LE); parasphenoid (PA); sphenoticprootic-pterosphenoid complex bone (SP+PO+PN); vomer (VO); basioccipital (BO); Weberian capsule (WC). Some elements are not shown. Scale bar = 1 mm.
FIGURE 12 in Filling in a biogeographic gap: the first Trichomycteridae from the Parnaíba River basin (Siluriformes: Trichomycteridae)
FIGURE 12 | A. Type locality of Ituglanis crispim, riacho da Volta, right tributary to Parnaíba River, Uruçuí, Parnaíba River basin, Piauí, Brazil. B. In detail the submerged filamentous algae. Photo taken on July 18, 2005.
FIGURE 1 in Filling in a biogeographic gap: the first Trichomycteridae from the Parnaíba River basin (Siluriformes: Trichomycteridae)
FIGURE 1 | Ituglanis crispim, MZUSP 126762, holotype, 28.8 mm SL, riacho da Volta, right tributary to Parnaíba River, Parnaíba River basin. Left lateral, dorsal, and ventral views.
Supporting Information for: Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life
<p>This data repository contains supporting information, data, and code for figures and analysis pipelines the PLOS Biology article: "Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life."</p> <ul> <li><strong>4d_full.treefile</strong>: Data underlying Figure 1 (note: tree was plotted as a cladogram and key groups collapsed on iToL; the treefile was not modified) and Figure S1.</li> <li><strong>S2_data.csv</strong>: Data underlying Figure 2.</li> <li><strong>S3_data.csv</strong>: Data underlying Figure 3.</li> <li>Data underlying Figure 4 is found in Table S4 of supplementary_tables.xlsx in the main manuscript</li> <li><strong>S5_data.csv</strong> Data underlying Figure 5</li> <li><strong>S6_data.csv</strong> Data underlying Figure S2 </li> <li><strong>illumina_only_assms.tar.gz</strong>: Archive of Illumina-only assemblies (FASTA) based on publicy available data that we did not generate. Assemblies generated from our own short-read data have been submitted to NCBI GenBank.</li> <li><strong>illumina_vcfs.tar.gz</strong>: Illumina-based variant calls and BED tracks of masked bases.</li> <li><strong>genomes.tar.gz</strong>: Genome files, for archival purposes.</li> <li><strong>repeatModeler-lib.tar.gz</strong>: RepeatModeler2 libraries.</li> <li><strong>diploid_genomes.tar.gz</strong>: diploid genomes and BED tracks of phased regions.</li> <li><strong>trees.tar.gz</strong>: phylogenies</li> </ul>
Fig. 2 in An Eocene sea turtle from the eastern North Pacific fills a Paleogene gap
Fig. 2. Photographs of sea turtle nuchal and peripherals of Chelonioidea gen. et sp. indet. (SDSNH 103374) from the Eocene Santiago Formation of California, USA (SDSNH loc. 5570). Ventral (A 1, A 4), anterior (A 2), and dorsal (A 3, A 5) views.
Fig. 1 in An Eocene sea turtle from the eastern North Pacific fills a Paleogene gap
Fig. 1. Geographic and geologic context of sea turtle fragments (Chelonioidea gen. et sp. indet.). A. Map of northern Pacific showing sea turtle localities. B. Position of Bressi Ranch locality of the Santiago Formation (SDSNH loc. 5570) in Southern California, USA. C. Stratigraphic column of the Bressi Ranch.
Fig. 6 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 6. Skeletal features of morphological variability of the phymaraphiniid sponge Pickettispongia tabelliformis (Chapmann and Crespin, 1934), from the Fitzgerald River National Park (A–D, Doyle Road; E–I, Hamersley River area), Australia, upper Eocene. A. Upper surface showing ectosomal discotriaenes; between them rhizoclone-like modified desmas are visible, ZPAL Pf. 14/st.A839. B. General view of the choanosomal skeleton with canal openings, ZPAL Pf. 14/st.A823. C. Detailed view of choanosomal skeleton surface showing trider desmas and their articulations, ZPAL Pf. 14/st.A823. D. Surface of choanosomal skeleton showing trider with hemispherical central tubercle, ZPAL Pf. 14/st.A823. E. Slightly eroded surface of the choanosomal skeleton showing densely distributed canal openings, ZPAL Pf. 14/st.914. F. Details of triders showing variability in sculpture of desmas, ZPAL Pf. 14/st.825. G. Oblique view of triders showing articulations, ZPAL Pf. 14/st.914. H, I. Details of trider sculpture. H. ZPAL Pf. 14/st.914. I. ZPAL Pf. 14/st.913.
Fig. 3 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 3. Morphological variability of the phymaraphiniid sponge Twertupia subglabra (Chapmann and Crespin, 1934) from the Fitzgerald River National Park (A, Doyle Road; B–D, F, G, J, K, Twertup area; E, H, I, Hamersley River area), Australia, upper Eocene. A. ZPAL Pf. 14/1. B. ZPAL Pf. 14/2. C. WAM 2023.2a. D. ZPAL Pf. 14/3. E. ZPAL Pf. 14/4. F. ZPAL Pf. 14/5. G. ZPAL Pf. 14/6. H. ZPAL Pf. 14/7. I. ZPAL Pf. 14/8. J. WAM 2023.2b. K. ZPAL Pf. 14/9.
Fig. 9 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 9. Geographic distribution of extant and fossil representatives of the demosponge family Phymaraphiniidae.
Fig. 8 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 8. Choanosomal desma skeleton of the extant phymaraphiniid sponge Kaliapis incrustans (Vacelet and Vasseur, 1971) from Madagascar, MNHN E531, Tu63, composed of trider desmas.
Fig. 5 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 5. Morphological variability of the phymaraphiniid sponge Pickettispongia tabelliformis (Chapmann and Crespin, 1934) from the Fitzgerald River National Park (B, Doyle Road; A, C Hamersley River area), Australia, upper Eocene. A. Opposite side views (A1, A2) and transverse section (A3) showing narrow slit in the middle, WAM 2023.3/a. B. ZPAL PF. 14/10. C. Opposite side views (C1, C2) and transverse section (C3) showing narrow slit in the middle, ZPAL Pf. 14/11.
Fig. 2 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 2. Specimens of phymaraphiniid sponges illustrated by Chapman and Crespin (1934) and Laubenfels (1953). A, B. Type material of Twertupia subglabra (Chapman and Crespin, 1934) (originally Thamnospongia subglabra; Chapman and Crespin 1934: pl. 9: 17, 18), Hamersley River area, Australia, upper Eocene. A. Holotype, GSWA H1. B. Paratype GSWA H16. C, D. Twertupia subglabra (originally Stachyspongia neoclavatella; Laubenfels 1953: text-fig. 2A right and left), SW Australia, exact locality unknown, upper Eocene, WA23732 (two different specimens with the same collection number). E. Type material of Pickettispongia tabelliformis (Chapman and Crespin, 1934) (originally Discodermia tabelliformis; Chapman and Crespin 1934: pl. 7: 7), Hamersley River area, Australia, upper Eocene. GSWA 1/3966, E1, E2, opposite surface views, E3, section view.
Fig. 4 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 4. Skeletal features of the phymaraphiniid sponge Twertupia subglabra (Chapmann and Crespin, 1934), from the Fitzgerald River National Park (A, B, F, H, Doyle Road; C, D, E, G, I, Hamersley River area), Australia, upper Eocene. A. Upper surface showing ectosomal disco/phyllotriaenes; between them rhizoclone-like modified desmas are visible, ZPAL Pf. 14/st.A822. B. General view of the choanosomal skeleton with canal openings, ZPAL Pf. 14/ st.A819. C. Detailed view of choanosomal skeleton surface showing trider desmas and their sculpture in oblique view, ZPAL Pf. 14/st.906. D. Surface of choanosomal skeleton showing development of the secondary skeleton composed of flattened modified triders covering canal openings, ZPAL Pf. 14/ st.906. E. Young trider desma partly incorporated into the skeleton, ZPAL Pf. 14/st.A743. F. Surface of choanosomal skeleton showing variable sculpturing of the triders, ZPAL Pf. 14/st.A819. G. Details of trider sculpture and articulations, ZPAL Pf. 14/st.906. H, I. Trider sculpture variability. H. ZPAL Pf. 14/st.A748. I. ZPAL Pf. 14/st.A821.
Fig. 1 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 1. Palaeogeography of the Eocene in SW Australia (A) and location of investigated sections (B, stars). Eocene sediment shaded. Based on Gammon et al. (2000b).
Fig. 7 in Eocene phymaraphiniid demosponges from South Western Australia: filling the gap
Fig. 7. Loose spicules of the extant phymaraphiniid sponge Kaliapsis incrustans (Vacelet and Vasseur, 1971) from Madagascar, MNHN E531, Tu63. A–C. Microrhabds. D, E. Amphiasters. F–J. Ectosomal phyllotriaenes in top (F–H, note tuberculation) and lower surface views (I, J, note short rhabd).
Fig. 1 in Filling gaps in species distributions through the study of biological collections: 415 new distribution records for Neotropical Cryptinae (Hymenoptera, Ichneumonidae)
Fig. 1. Heatmap with new distribution records for Neotropical Cryptinae. Warmer colors (red) indicate higher density of records, while whiter areas indicate sparse records or lack thereof.
Fig. 12 in Filling the Corallian gap: New information on Late Jurassic marine reptile faunas from England
Fig. 12. Tooth of the metriorhynchid reptile Metriorhynchus superciliosus de Blainville, 1853 (NHMUK PV OR 47044) from Heddington (Wiltshire), Corallian, in labial view (A), close up of labial ornamentation (B).
Fig. 14 in Filling the Corallian gap: New information on Late Jurassic marine reptile faunas from England
Fig. 14. Time calibrated phylogenetic tree of the main Jurassic Sub-Boreal Seaway marine reptile lineages stratigraphic ranges. A. Plesiosauria (modified from Fischer et al. 2015, 2017). B. Ichthyosauria (modified from Fischer et al. 2014). C. Thalattosuchia (Young et al. 2016; Foffa et al. 2017). MJML, Museum of Jurassic Marine Life—the Steve Etches Collection, Kimmeridge, UK.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.