Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
241
datasets available to search
ShareScore release 0.9.0
Dataset results
241 results for “glycine”
Figure 1 in Evaluation of perennial Glycine species for response to Meloidogyne incognita, Rotylenchulus reniformis, and Pratylenchus penetrans
Figure 1: Representative images of soybean and perennial Glycine species roots at 8 weeks post-inoculation of Meloidogyne incognita. Gall index rating is given in parentheses A, susceptible check G. max cv. Pickett 71. B, resistant check G. max cv. Forrest. C, G. tomentella PI 339655. D, G. latifolia PI 559298. E, G. latifolia PI 559300. F, G. tabacina PI 373990.
Fig. 5 in Evaluating categories of resistance in soybean genotypes from the United States and Brazil to Aphis glycines (Hemiptera: Aphididae)
Fig. 5. Mortality (%) of Aphis glycines on 7 soybean genotypes at 5, 7, and 10 d afer infestation (23 ± 3 °C; 60 ± 10% RH; 16:8 h L:D photoperiod).
Fig. 4 in Evaluating categories of resistance in soybean genotypes from the United States and Brazil to Aphis glycines (Hemiptera: Aphididae)
Fig. 4. Cumulative aphid-days (CAD) for soybean genotypes infested with Aphis glycines at V1 and V3 stages (23 ± 3 °C; 60 ± 10% RH; 16:8 h L:D photoperiod).
Fig. 3 in Evaluating categories of resistance in soybean genotypes from the United States and Brazil to Aphis glycines (Hemiptera: Aphididae)
Fig. 3. Number (mean ± SE) of Aphis glycines individuals on 7 soybean genotypes 24 h afer infestation (23 ± 3 °C; 60 ± 10% RH; 16:8 h L:D photoperiod). Means with the same lower case letter do not differ by Fisher's LSD test (P> 0.05). (F = 1.74; df = 6; P = 0.0110).
Fig. 2 in Evaluating categories of resistance in soybean genotypes from the United States and Brazil to Aphis glycines (Hemiptera: Aphididae)
Fig. 2. Number (mean ± SE) of Aphis glycines individuals on KS4202 plants 24 h afer infestation (23 ± 3 °C; 60 ± 10% RH; 16:8 h L:D photoperiod). Means with the same lower case letter do not differ by Fisher's LSD test (P> 0.05). (F = 1.09; df = 6; P = 0.3897).
Improved genome assembly and annotation of the soybean aphid (Aphis glycines Matsumura)
<p>Updated genome assembly and annotation of <em>Aphis glycines</em> biotype 4.</p> <p><strong>Overview of files included in this release:</strong></p> <p><strong>Frozen release:</strong></p> <p>Updated <em>A. glycines </em>biotype 4 genome assembly: Aphis_glycines_4.v2.1.scaffolds.fa.gz </p> <p>BRAKER2 gene models for updated <em>A. glycines </em>biotype 4 genome assembly: Aphis_glycines_4.v2.1.scaffolds.fa.gff</p> <p>BRAKER2 protein sequences: Aphis_glycines_4.v2.1.scaffolds.fa.gff.aa.fa</p> <p>BRAKER2 nucleotide coding sequences: Aphis_glycines_4.v2.1.scaffolds.fa.gff.CDS.fa</p> <p><strong>Unfiltered raw intermediate genome assemblies:</strong></p> <p>Canu assembly of biotype 4 PacBio data from Wenger et. al. (2017): canu.fa.gz</p> <p>DBG2OLC hybrid assembly of selected biotype 4 MiSeq data and biotype 4 PacBio data from Wenger et. al. (2017): DBG2OLC.fa.gz</p> <p>Merged Canu and DBG2OLC assembly created with quickmerge: quickmerge.fa.gz</p> <p>Pilon polished (2 rounds) quickmerge assembly: quickmerge.pilon_r2.fa.gz</p> <p><strong>Mitochondrial and endosymbiont contigs extracted from the pilon polished quickmerge assembly: </strong></p> <p><em>A. glycines </em>biotype 4 mitochondrial genome: Aphis_glycines_4_Buchnera_v1.fa</p> <p><em>A. glycines </em>biotype 4 <em>Buchnera aphidicola</em> contigs: Aphis_glycines_4_Buchnera_v1.fa</p> <p><em>A. glycines </em>biotype 4 <em>Wolbachia</em> contigs: Aphis_glycines_4_Buchnera_v1.fa</p> <p><strong>Other files:</strong></p> <p>MUSCLE alignment of <em>A. glycines </em>v1, <em>A. glycines </em>biotype 4 v2.1 and <em>Drosophila melanogaster</em> R6.22 Osiris proteins in fasta format: D_mel_v1_v2_osiris.prots.muscle.fasta</p> <p>FastTree Maximum Likelihood phylogeny based on the MUSCLE alignment of Osiris genes in newick format: D_mel_v1_v2_osiris.prots.muscle.FastTree.nwk</p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p> <p> </p>
A Refined Open State of the Glycine Receptor Obtained Via Molecular Dynamics Simulations
<p>Representative simulation trajectory and coordinate files (starting coordinates a representative structure) from the work which first appeared on bioRxiv:</p> <p>A Refined Open State of the Glycine Receptor Obtained Via Molecular Dynamics Simulations</p> <p>Marc A. Dämgen, Philip C. Biggin</p> <p>bioRxiv 668830; doi: https://doi.org/10.1101/668830</p>
Figure 1 in Host instars preference, density-dependent parasitism and behavioral perspective of parasitoids (Aphidius colemani, Aphidius matricariae and Aphelinus abdominalis) in Aphis glycines and Aphis gossypii
Figure 1: Comparison of parasitoids (Ad.colemani, Ad.matricariae and Al.abdominalis) on different ages (nymphal instars) of the(A) As.glycines (n= 30) and (B) As. gossypii (n= 30).
Figure 3 in Partially purified Glycine max proteinase inhibitors: potential bioactive compounds against tobacco cutworm, Spodoptera litura (Fabricius, 1775) (Lepidoptera: Noctuidae)
Figure 3. Food assimilation (in mg) with respect to control when second-instar larvae of S. litura were given different concentrations of soybean PIs. Columns and bars represent the mean ± SE. Different letters above the columns representing each concentration indicate significant differences with Tukey's test at P ≤ 0.05.
Figure 2 in Partially purified Glycine max proteinase inhibitors: potential bioactive compounds against tobacco cutworm, Spodoptera litura (Fabricius, 1775) (Lepidoptera: Noctuidae)
Figure 2. Percentage survival of adults when second-instar larvae of S. litura were given different concentrations of soybean PIs. Columns and bars represent the mean ± SE. Different letters above the columns representing each concentration indicate significant differences with Tukey's test at P ≤ 0.05.
Figure 1 in Partially purified Glycine max proteinase inhibitors: potential bioactive compounds against tobacco cutworm, Spodoptera litura (Fabricius, 1775) (Lepidoptera: Noctuidae)
Figure 1. (A) Normal S. litura adult, (B–D) abnormality in adults observed at 100 µg/mL concentration of soybean PIs.
Figure 4 in Partially purified Glycine max proteinase inhibitors: potential bioactive compounds against tobacco cutworm, Spodoptera litura (Fabricius, 1775) (Lepidoptera: Noctuidae)
Figure 4. Trypsin activity in larvae of S. litura at different time intervals under the influence of partially purified soybean PIs.
Fig. 1 in Feeding behavior of Aphis glycines (Hemiptera: Aphididae) on soybeans exhibiting antibiosis, antixenosis, and tolerance resistance
Fig. 1. Mean number of potential drops by Aphis glycines on soybean genotypes for a 15 h (900 min) period.
Fig. 2 in Feeding behavior of Aphis glycines (Hemiptera: Aphididae) on soybeans exhibiting antibiosis, antixenosis, and tolerance resistance
Fig. 2. Mean duration of sieve element phase by Aphis glycines on soybean genotypes for a 15 h (900 min) period.
Fig. 2 in Effects of temperature on survival, development, and reproduction of Aphis glycines (Hemiptera: Aphididae) autumnal morphs
Fig. 2. Age-specific fecundity (fx) of Aphis glycines gynoparae and oviparae on overwintering host, Rhamnus davurica at 13, 18, 23, and 28 °C.
Fig. 1 in Effects of temperature on survival, development, and reproduction of Aphis glycines (Hemiptera: Aphididae) autumnal morphs
Fig. 1. Age-specific survival rates (lx) of Aphis glycines gynoparae, males, and oviparae at 13, 18, 23, 28, and 33 °C.
Inputs for computational electrophysiology of the Glycine Receptor with GROMACS 19
<p>Inputs for computational electrophysiology of the Glycine Receptor (D&B-open model, doi:10.5281/zenodo.3476169) with GROMACS 19 and the CHARMM36 force-field, using:</p> <p>1- a single membrane system with the application of a constant electric field.</p> <p>2- a double membrane system with the application of the charge imbalance protocol.</p> <p>The model of the glycine receptor was reduced to its transmembrane domain and simulated with atomic positional restraints.</p> <p>Related to the published article: "On the functional annotation of open-channel structures in the glycine receptor".</p>
Research data supporting: "A millisecond coarse-grained simulation approach to decipher allosteric cannabinoid binding at the glycine receptor α1"
<p>This repository contains the set of coarse-grained (CG) m<span>olecular snapshots representative </span><span>of the most populated binding modes for glycine receptor (GlyR) in complex with the ligands, along with atomistic backmapped representations. In addition, it contains also CG Martini 3 parameters, charmm36-FF backmapping library file and GROMACS files (itp and gro files) for both ligands.</span></p>
Fig. 1 in Evaluating categories of resistance in soybean genotypes from the United States and Brazil to Aphis glycines (Hemiptera: Aphididae)
Fig. 1. Damage level scale (1 to 5); feeding damage caused by Aphis glycines on soybean leaves.
Stress amelioration response of glycine betaine and Arbuscular mycorrhizal fungi in sorghum under Cr toxicity
<p>In search of the solution to Cr toxicity a two-year pot experiment (completely randomized design with three replications), in three genetically different varieties of sorghum (SSG 59-3, HJ 513 and HJ 541) under Cr toxicity (2 and 4 ppm) was conducted to determine the effect of glycine betaine (50 and 100mM) and <i>Arbuscular mycorrhizal fungi</i> (AMF) on the antioxidant system (enzymes <i>viz.</i> superoxide dismutase, ascorbate peroxidase, catalase, glutathione reductase, peroxidase and metabolites <i>viz.</i> glutathione, ascorbate, proline, β-carotene) along with Cr accumulation and indices of oxidative stress parameters (polyphenol oxidase, hydrogen peroxide and malondialdehyde) at two growth stages (vegetative and grain filling). According to results; Cr stress (2 & 4 ppm) increased its accumulation and indices of oxidative stresses significantly (<i>p≤0.05</i>) in all varieties of sorghum at both growth stages. However, soil application of glycine betaine (GB) and AMF decreased Cr accumulation and indices of oxidative stress by increasing antioxidant enzymes and metabolites activities at both growth stages in all varieties. The combination of 100mM GB with AMF was observed most significant (<i>p≤0.05</i>) in decreasing oxidative stress and improved the antioxidant system's activities. The SSG 59-3 cultivar showed the lowest Cr accumulation indices of oxidative stress and highest antioxidant system's activity among these three cultivars at both growth stages. Thus, SSG 59-3 was found most tolerant cultivars followed by HJ 513 and then HJ 541. These findings suggest that both GB and AMF, either individually or combined can play a positive role to reduce oxidative stress and increased antioxidant attributes under Cr toxicity in sorghum.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.