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37
datasets available to search
ShareScore release 0.9.0
Dataset results
37 results for “haplotype sequencing”
North Pacific harbor porpoise SNP and microhaplotype genotypes, mitochondrial control region haplotype sequences
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Data from: How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data
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DNA sequences for six chloroplast loci concatenated, representing haplotypes found in Colocasia esculenta, and closely related Araceae
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Data from: Haplotype sequence collection of ABO blood group alleles by long-read sequencing reveals putative A1-diagnostic variants
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Datasets used in "Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat"
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Figure 3. Bayesian phylogram for cytochrome b sequences. Upper Sacramento River basin haplotypes are distributed among clades A–D in Extensive diversification of pebblesnails (Lithoglyphidae: Fluminicola) in the upper Sacramento River basin, northwestern USA
Figure 3. Bayesian phylogram for cytochrome b sequences. Upper Sacramento River basin haplotypes are distributed among clades A–D. Posterior probability values ≥ 90% are shown. Upper Sacramento River basin lineages newly discovered in this study are highlighted by the larger font. Specimen codes are from Table 1.
An approach for estimating haplotype diversity from sequences with unequal lengths
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Data from: Direct sequencing of haplotypes from diploid individuals through a modified emulsion PCR-based single-molecule sequencing approach
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Whole-genome Haplotype Reconstruction using Proximity-ligation and Shotgun Sequencing
GEO Series GSE48592. Homo sapiens; Mus musculus. 4 samples. Type: Other.
ChIP-sequencing for histone modifications in primary human hepatocytes from three individuals heterozygous for the T2D risk haplotype at the SLC16A11 locus
GEO Series GSE99301. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Data from: Haplotype-phased synthetic long reads from short-read sequencing
Next-generation DNA sequencing has revolutionized the study of biology. However, the short read lengths of the dominant instruments complicate assembly of complex genomes and haplotype phasing of mixtures of similar sequences. Here we demonstrate a method to reconstruct the sequences of individual nucleic acid molecules up to 11.6 kilobases in length from short (150-bp) reads. We show that our method can construct 99.97%-accurate synthetic reads from bacterial, plant, and animal genomic samples, full-length mRNA sequences from human cancer cell lines, and individual HIV env gene variants from a mixture. The preparation of multiple samples can be multiplexed into a single tube, further reducing effort and cost relative to competing approaches. Our approach generates sequencing libraries in three days from less than one microgram of DNA in a single-tube format without custom equipment or specialized expertise.
Data from: Rapid identification of major histocompatibility complex class I haplotypes using deep sequencing in an endangered Old World monkey
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Data from: Haplotype-phased synthetic long reads from short-read sequencing
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Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing in bovine embryos
GEO Series GSE178156. Bos taurus. 9 samples. Type: Genome variation profiling by array.
Long-Read Sequencing of an Advanced Cancer Cohort Resolves Rearrangements, Unravels Haplotypes, and Reveals Methylation Landscapes
GEO Series GSE270257. Homo sapiens. 232 samples. Type: Methylation profiling by high throughput sequencing.
Intraspecific sequence variation and complete haplotype-resolved assemblies refine the identification of rapidly evolving regions in humans
GEO Series GSE311407. Mus musculus; Homo sapiens; Escherichia coli. 7 samples. Type: Expression profiling by high throughput sequencing.
Non-invasive prenatal paternity testing by analysis of Y-chromosome mini-STR haplotype using next-generation sequencing
GEO Series GSE186434. Homo sapiens. 14 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.