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FIG. 3 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 3. — Flabellodrilus luberonensis Gérard, Decaëns & Marchán, n. gen., n. sp.: A, external view of the anterior body; B, lateral view of the anterior body; C, dissection of the anterior body. Abbreviations: CL, clitellum, CR, crop, GM, genital marks, GZ, gizzard, IN, intestine, MP, male pore, NE, nephridia, SEP, septa, SP, permathecae, SV, seminal vesicles, TP, tubercula pubertatis. Photos: T. Decaëns. Scale bars: 5 mm.
FIG. 1 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 1. — Multilocus phylogenetic tree focused on Allolobophora-related Lumbricidae Rafinesque, 1815 genera (the full phylogenetic tree is shown in Appendix 1). The tree was obtained from Bayesian inference based on the concatenated sequences of the COI-16S-ND1-12S-28S molecular markers. Posterior probability values are shown beside nodes. White boxes show target genera while grey boxes indicate closely related genera (species labels shown in Appendix 1).
FIG. 9 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 9. — Vignysa callasensis Gérard, Decaëns & Marchán, n. sp.: A, external view of the anterior body; B, lateral view of the anterior body; C, dissection of the anterior body; D, detail of the anterior body dissection showing the spermathecae. Abbreviations: CL, clitellum; GM, genital marks; GZ, gizzard; IN, intestine; MP, male pore; SEP, septa; SV, seminal vesicles; TP, tubercula pubertatis; TY, typhlosole. Scale bars: A-C, 5 mm, D, 1.5 mm. Photos: T. Decaëns.
FIG. 12 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 12. — Satellite pictures around type localities of Flabellodrilus luberonensis Gérard, Decaëns & Marchán, n. gen., n. sp., Allolobophora delitescens Gérard, Decaëns & Marchán, n. sp. and Vignysa callasensis Gérard, Decaëns & Marchán, n. sp. in the 1950-1965 period (left) and in 2022 (right). 1950-1965: satellite pictures. Credits: Institut national de l'information géographique et forestière (IGN); Google 2022.
FIG. 2 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 2. — DNA barcode tree of the genus Vignysa Bouché, 1970. The tree was obtained from Bayesian inference based on the sequences of COI barcodes. Posterior probability values are shown above branches. Grey bars delimit individuals belonging to each species.
FIG. 11 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 11. — Living specimen of Vignysa callasensis Gérard, Decaëns & Marchán, n. sp. Photo: S. Gérard.
FIG. 7 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 7. — Pre-clitellar nephridia of Allolobophora delitescens Gérard, Decaëns & Marchán, n. sp. Scale bar: 1 mm. Photo: D. F. Marchán.
FIG. 6 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 6. — Allolobophora delitescens Gérard, Decaëns & Marchán, n. sp.: A, external view of the anterior body; B, lateral view of the anterior body; C, dissection of the anterior body. Abbreviations: CL, clitellum, CR, crop, GM, genital marks, GZ, gizzard, IN, intestine, MP, male pore, SEP, septa, SV, seminal vesicles, TP, tubercula pubertatis, TY, typhlosole. Scale bars: 5 mm. Photos: T. Decaëns.
FIG. 5 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 5. — Distribution of newly described Lumbricidae species, Flabellodrilus luberonensis Gérard, Decaëns & Marchán, n. gen., n. sp. and Allolobophora delitescens Gérard, Decaëns & Marchán, n. sp. (stars), and their closest relatives (circles) in Southern France. All species within the genus Flabellodrilus Gérard, Decaëns & Marchán, n. gen. are represented. Credits: Google 2022.
APPENDIX 1 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
APPENDIX 1. — Full multilocus phylogenetic tree focused on Allolobophora-related Lumbricidae genera. The tree was obtained from Bayesian inference based on the concatenated sequences of the COI-16S-ND1-12S- 28S molecular markers. Posterior probability values are shown beside nodes.
FIG. 8 in Resampling Bouché's historical localities reveals three new species and helps identifying a new genus of earthworms (Oligochaeta, Hormogastridae and Lumbricidae) in Southeastern France
FIG. 8. — Distribution of Vignysa callasensis Gérard, Decaëns & Marchán, n. sp. (star) and its closest relatives (circles) in Southern France. All species of the genus Vignysa Bouché, 1970 are represented. Credits: Google 2022.
On the Helpfulness of Answering Developer Questions on Discord with Similar Conversations and Posts from the Past
<p>Replication Package for "On the Helpfulness of Answering Developer Questions on Discord with Similar Conversations and Posts from the Past".</p>
Fig. 3 in Helping Protists to Find Their Place in a Big Data World
Fig. 3. Selected component of Catalogue of Life (URL 17), showing that the Family Cyrtolophosidae is classified in three locations (with variant spellings).
Fig 2 in Helping Protists to Find Their Place in a Big Data World
Fig 2. Reconciliation of alternative names for the same taxon (an invasive diatom species). The diagram shows three classes of 'names': scientific names, vernacular names, and surrogates or strings that act in the same way as names (sequence data in this example). Gomphonema vulgare and Echinella geminata were applied independently to the same species and are heterotypic synonyms. The reconciliation group includes the homotypic synonyms (Echinella geminata and Didymosphenia geminata), and the lexical variants of all names. Reconciliation groups allow computer-based queries initiated with one name to be answered with information associated with all names.
Fig. 1 in Helping Protists to Find Their Place in a Big Data World
Fig. 1. Modular' model for the infrastructure of a big data world. a – Within a module, nodes obtain content from one or more sources, normalize, enrich, and deliver it to end users. Annotation systems allow users to advise the source and nodes as to the quality of content. b – Nodes interconnect in anarchic ways that allow for evolution and expanding functionality.
Mapping of OrphaCodes to SNOMED CT with the help of Usagi
<p>The CSV file contains the mapping of OrphaCodes to SNOMED CT carried out with Usagi.<br>This file has not yet been quality assured, but will be made available for validation.</p>
Challenges of sampling and how phylogenetic comparative methods help: Supplementary data
<p>Supplementary data and results files for the paper:</p> <p>Macklin-Cordes, Jayden L. & Erich R. Round (2022). Challenges of sampling and how phylogenetic comparative methods help: With a case study of the Pama-Nyungan laminal contrast. <em>Linguistic Typology</em> (advance online publication). <a href="https://doi.org/10.1515/lingty-2021-0025">https://doi.org/10.1515/lingty-2021-0025</a></p>
Data from: A burning issue: Savanna fire management can generate enough carbon revenue to help restore Africa's rangelands and fill Protected Area funding gaps
<p>Many savanna-dependent species in Africa including large herbivores and apex predators are at increasing risk of extinction. Achieving effective management of protected areas (PAs) in Africa where lions live will cost an estimated USD >$1-2 B/year in new funding. We explored the potential for fire management-based carbon-financing programs to fill this funding gap and benefit degrading savanna ecosystems. We demonstrated how introducing early dry season fire management programs could produce potential carbon revenues (PCR) from either a single carbon-financing method (avoided emissions) or from multiple sequestration methods ranging from USD $59.6-$655.9 M/year (at USD $5/ton) or USD $155.0 M–$1.7 B/year (at USD $13/ton). We highlighted variable but significant PCR for savanna PAs from USD $1.5–$44.4 M/year per PA. We suggest investing in fire management programs to jump-start the United Nations Decade of Ecological Restoration to help restore degraded African savannas and conserve imperiled keystone herbivores and apex predators. <br> <br> Open Access article: <a href="https://doi.org/10.1016/j.oneear.2021.11.013">https://doi.org/10.1016/j.oneear.2021.11.013</a></p>
Technology pathways could help drive the U.S. West Coast grid's exposure to hydrometeorological uncertainty (Figure Data)
<p>Data used to create figures for:</p> <p>Wessel, J., Kern, J.D., Voisin, N., Oikonomou, K., Haas, J. (2021). “Technology pathways could drive the U.S. West Coast grid's exposure to hydrometeorological uncertainty”.</p> <p>California and West Coast Power System (CAPOW) model is Python based. The model was built to simulate the operations of the major markets comprising the West Coast bulk electric power system: the Mid-Columbia (Mid-C) market, and the California Independent System Operator (CAISO). This version adds future technology pathways, EV adoption, and battery storage.</p> <p>See https://github.com/jawessel/CAPOW_pathways (v1.0 release) for version of CAPOW model used.</p>
parallel-fibered bone; A5, osteocyte lacunae with well-preserved canaliculi; B3, osteocyte lacunae lacking canaliculi; B4, B5, growth pattern with preserved residuals of the thick annuli and zones (zo I–III) and thin annuli and zones (zo IV–VII); A6, growth pattern with preserved thin annuli and thick zones (zo I–IV), the dotted line marks the border between the perimedullary region and the cortex. Arrows in A5 and B3 indicate osteocyte lacunae; in B4, B5, and A6 indicate the annuli. Growth pattern in B4 figured on the lateral section side, in B5 and A5 on the ventral side; note the cortex thickness variation between B4 and B5. A1, A3, A4, A6, B1, B4, B5 in polarized light and A2, A5, B2, B3 in normal transmitted light. Abbreviations: an, annulus; ec, erosion cavity; pmr, perimedullary region; pos, primary osteon; sos, secondary osteon; zo, zone. in Palaeohistology helps reveal taxonomic variability in exceptionally large temnospondyl humeri from the Upper Triassic of Krasiejów, SW Poland
parallel-fibered bone; A5, osteocyte lacunae with well-preserved canaliculi; B3, osteocyte lacunae lacking canaliculi; B4, B5, growth pattern with preserved residuals of the thick annuli and zones (zo I–III) and thin annuli and zones (zo IV–VII); A6, growth pattern with preserved thin annuli and thick zones (zo I–IV), the dotted line marks the border between the perimedullary region and the cortex. Arrows in A5 and B3 indicate osteocyte lacunae; in B4, B5, and A6 indicate the annuli. Growth pattern in B4 figured on the lateral section side, in B5 and A5 on the ventral side; note the cortex thickness variation between B4 and B5. A1, A3, A4, A6, B1, B4, B5 in polarized light and A2, A5, B2, B3 in normal transmitted light. Abbreviations: an, annulus; ec, erosion cavity; pmr, perimedullary region; pos, primary osteon; sos, secondary osteon; zo, zone.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.