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Figure 3. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 3. - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Changes in Exhaled 13CO2/12CO2 Breath Delta Value as an Early Indicator of Infection in ICU Patients
ClinicalTrials.gov study NCT02327130. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Pairwise distance demarcation of species in the family Coronaviridae. a, Diagonal matrix of PPDs of 2,505 viruses clustered according to 49 coronavirus species, 39 established and 10 pending or tentative, and ordered from the most to least populous species, from left to right; green and white, PPDs smaller and larger than the inter-species threshold, respectively. Areas of the green squares along the diagonal are proportional to the virus sampling of the respective species, and virus prototypes of the five most sampled species are specified to the left; asterisks indicate species that include viruses whose intra-species PPDs crossed the inter-species threshold (threshold 'violators'). b, Maximal intra-species PPDs (x axis, linear scale) plotted against virus sampling (y axis, log scale) for 49 species (green dots) of the Coronaviridae. Indicated are the acronyms of virus prototypes of the seven most sampled species. Green and blue plot sections represent intra-species and intra-subgenera PPD ranges. The vertical black line indicates the inter-species threshold. c, Shown are the PDs of non-identical residues (y axis) for four viruses representing three major phylogenetic lineages (clades) of the species Severe acute respiratorysyndrome-related coronavirus (panel b) and all pairs of the 256 viruses of this species ('all pairs'). The PD values were derived from pairwise distances in the MSA that were calculated using an identity matrix. Panels a and b were adopted from the DEmARC v.1.4 output. in The species Severe acute respiratory syndromerelated coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
Pairwise distance demarcation of species in the family Coronaviridae. a, Diagonal matrix of PPDs of 2,505 viruses clustered according to 49 coronavirus species, 39 established and 10 pending or tentative, and ordered from the most to least populous species, from left to right; green and white, PPDs smaller and larger than the inter-species threshold, respectively. Areas of the green squares along the diagonal are proportional to the virus sampling of the respective species, and virus prototypes of the five most sampled species are specified to the left; asterisks indicate species that include viruses whose intra-species PPDs crossed the inter-species threshold (threshold 'violators'). b, Maximal intra-species PPDs (x axis, linear scale) plotted against virus sampling (y axis, log scale) for 49 species (green dots) of the Coronaviridae. Indicated are the acronyms of virus prototypes of the seven most sampled species. Green and blue plot sections represent intra-species and intra-subgenera PPD ranges. The vertical black line indicates the inter-species threshold. c, Shown are the PDs of non-identical residues (y axis) for four viruses representing three major phylogenetic lineages (clades) of the species Severe acute respiratorysyndrome-related coronavirus (panel b) and all pairs of the 256 viruses of this species ('all pairs'). The PD values were derived from pairwise distances in the MSA that were calculated using an identity matrix. Panels a and b were adopted from the DEmARC v.1.4 output.
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome. in Adiantum japonicum, a new species of the Adiantum pedatum complex (Pteridaceae) from Japan
FIGURE. The Bayesian tree of the Adaintum pedatum complex based on chloroplast markers and corresponding rhizome type. Support values (Bayesian inference posterior probability (BIPP) (upper) ≥ 0.5, and maximum likelihood bootstrap support (MLBS) (nether) ≥ 50%) are shown above the main branches, the thickened branches indicate MLBS=100 and BIPP=1. Yellow bar means erect rhizome; blue bar means creeping rhizome; gray bar means decumbent or short-creeping rhizome.
FIGURE Phylogenetic relationships of the Coelastrella genus inferred from the 18S-ITS1-5.8S-ITS2 region. The Neighbor-Joining (NJ), Maximum Likelihood (ML) bootstrap values and Bayesian posterior probabilities (PP) are presented at the nodes (NJ/ML/PP). Only values above 75 are shown. Strains provided in this study are indicated in bold font. Authentic strains marked with asterisks. The scale bar represents the number of substitutions per site. The GenBank accession numbers of Coelastrella can be found in the Table 3. in Morphological and phylogenetic relations of members of the genus Coelastrella (Scenedesmaceae, Chlorophyta) from the Ural and Khentii Mountains (Russia, Mongolia)
FIGURE Phylogenetic relationships of the Coelastrella genus inferred from the 18S-ITS1-5.8S-ITS2 region. The Neighbor-Joining (NJ), Maximum Likelihood (ML) bootstrap values and Bayesian posterior probabilities (PP) are presented at the nodes (NJ/ML/PP). Only values above 75 are shown. Strains provided in this study are indicated in bold font. Authentic strains marked with asterisks. The scale bar represents the number of substitutions per site. The GenBank accession numbers of Coelastrella can be found in the Table 3.
FIGURE. Phylogenetic tree based on RAxML analyses of a combined LSU, ITS and SSU dataset. Bootstrap support values for ML and MP equal to or greater than 75% and PP value greater than 0.95 are in thickened. Ex-type isolates are in bold, and new taxa are indicated in red. The tree is rooted with Atractospora aquatica (S-1297) and A. aquatica (MFLU 18–2322). in Conlarium sichuanense sp. nov., on Ficus virens from Sichuan Province, China
FIGURE. Phylogenetic tree based on RAxML analyses of a combined LSU, ITS and SSU dataset. Bootstrap support values for ML and MP equal to or greater than 75% and PP value greater than 0.95 are in thickened. Ex-type isolates are in bold, and new taxa are indicated in red. The tree is rooted with Atractospora aquatica (S-1297) and A. aquatica (MFLU 18–2322).
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold. in Four new species of Entoloma (Entolomataceae, Agaricomycetes) subgenera Cyanula and Claudopus from Vietnam and their phylogenetic position
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold.
text-fig. 53. Strict consensus tree resulting from the analysis of the pruned data matrix with 51 taxa. Numbers at the nodes indicate bootstrap support values in branches that have more than 50 per cent support. The consensus tree is based on 5544 trees of 652 steps (CI 0-42, RI 0-748, RCI 0-314). in The interrelationships and evolution of basal theropod dinosaurs
text-fig. 53. Strict consensus tree resulting from the analysis of the pruned data matrix with 51 taxa. Numbers at the nodes indicate bootstrap support values in branches that have more than 50 per cent support. The consensus tree is based on 5544 trees of 652 steps (CI 0-42, RI 0-748, RCI 0-314).
FIGURE 7. Variability range for the chosen quantitative characters. Points indicate a median value, boxes represent 5 and 95 in A revision of taxonomic relation between Oenothera royfraseri and O. turoviensis (sect. Oenothera, subsect. Oenothera; Onagraceae) based on multivariate analyses of morphological characters
FIGURE 7. Variability range for the chosen quantitative characters. Points indicate a median value, boxes represent 5 and 95 percentile, whiskers around the boxes refer to 1 and 99 percentile; B – O. biennis, P – O. perangusta, R – O. royfraseri (including the specimens labelled as O. turoviensis, except the original material of the latter), T – O. turoviensis (the original material only).
FIGURE. Phylogram of Panus generated from Maximum likelihood analysis of ITS sequence data. Lentinus crinitus (MK408650) was selected as the outgroup taxon. Maximum likelihood bootstrap values greater than 60% are indicated above the nodes. The new record Panus similis (HKAS 121668) is in black bold. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. Phylogram of Panus generated from Maximum likelihood analysis of ITS sequence data. Lentinus crinitus (MK408650) was selected as the outgroup taxon. Maximum likelihood bootstrap values greater than 60% are indicated above the nodes. The new record Panus similis (HKAS 121668) is in black bold.
FIGURE4. Maximum-likelihood tree inferred from 694 bp of COI using a HKY+G substitution model implemented in MEGAX (Kumar et al. 2018). Bootstrap values are indicated on the nodes. in --Molecular--and--acoustic--evidence--support--the--species--status--of--Anthus rubescens rubescens and--Anthus [rubescens] japonicus--(Passeriformes:--Motacillidae)
FIGURE4. Maximum-likelihood tree inferred from 694 bp of COI using a HKY+G substitution model implemented in MEGAX (Kumar et al. 2018). Bootstrap values are indicated on the nodes.
FIGURE3. Maximum-likelihood tree inferred from 998 bp of CR using a HKY+G substitution model implemented in MEGAX (Kumar et al. 2018). Bootstrap values are indicated on the nodes. in --Molecular--and--acoustic--evidence--support--the--species--status--of--Anthus rubescens rubescens and--Anthus [rubescens] japonicus--(Passeriformes:--Motacillidae)
FIGURE3. Maximum-likelihood tree inferred from 998 bp of CR using a HKY+G substitution model implemented in MEGAX (Kumar et al. 2018). Bootstrap values are indicated on the nodes.
Are Neutrophil-Lymphocyte Ratio, Platelet-Lymphocyte Ratio, and Systemic Immune Inflammation Score Values Indicators for Postoperative Pain?
ClinicalTrials.gov study NCT05558553. IPD Sharing: NO. Countries: 1. Publications: 1.
Predictive Value of Induced Sleep Endoscopy on Surgical Indication in Obstructive Sleep Apnea Syndromes
ClinicalTrials.gov study NCT05201222. IPD Sharing: Not stated. Countries: 1. Publications: 5.
Diagnosis Value of Interoceptive EEG Indicators by Rectal Stimulation in DoC
ClinicalTrials.gov study NCT07208942. IPD Sharing: NO. Countries: 1. Publications: 0.
Prognostic Values of Inflammation-based Indices in Gastric Cancer
ClinicalTrials.gov study NCT05075421. IPD Sharing: NO. Countries: 1. Publications: 5.
Implementation of Indication Criteria for Total Knee Replacement in Osteoarthritis (Value-based TKR)
ClinicalTrials.gov study NCT04837053. IPD Sharing: NO. Countries: 1. Publications: 2.
Cardiac Toxicity and Prognostic Value of New Echocardiographic Indicators in the Treatment of Primary Multiple Myeloma
ClinicalTrials.gov study NCT06039735. IPD Sharing: NO. Countries: 1. Publications: 7.
Data from: With Ellenberg indicator values towards the north: does the indicative power decrease with distance from Central Europe?
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Predictive value of clinical indices for intravenous immunoglobulin resistance and coronary artery lesion in Kawasaki disease
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
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