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89 results for “integrated species delimitation”
FIGURE 2 in Integrative taxonomy and phylogeny-based species delimitation of Philippine water monitor lizards (Varanus salvator Complex) with descriptions of two new cryptic species
FIGURE 2. Distribution of Philippine species in the Varanus salvator Complex, and Maximum Likelihood phylogenetic inference (RAxML v7.5.4; Stamatakis, 2006) for the V. salvator Complex with Bayesian support values (MrBayes v3.2; Ronquist et al. 2011) mapped onto relevant nodes. Solid circles indicate posterior probabilities>95 and bootstrap support>75, open circles indicate bootstrap support>75 only. Asterisk "*" denotes sampling from Semirara Island. Open stars indicate type localities for V. dalubhasa sp. nov. (Bicol Peninsula, Luzon Island) and V. bangonorum sp. nov. (Mindoro Island). Scale bar represents number of changes.
FIGURE 9 in Integrative taxonomy and phylogeny-based species delimitation of Philippine water monitor lizards (Varanus salvator Complex) with descriptions of two new cryptic species
FIGURE 9. Holotype of Varanus bangonorum sp. nov. (PNM 9798), with body shown in dorsal and ventral aspects; and head shown in dorsal, ventral and profile aspects. Scale = 50 mm.
Figure 9 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 9 Orotettix males. Phallic complex, species as indicated. A, D, G, J, M, distal portion of aedeagal valves, lateral view; B, E, H, K, N, distal portion of aedeagal valves, dorsal view; C, F, I, L, O, epiphallus, dorsal view. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 11 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 11 Outgroup taxa used in the phylogenetic analyses, species as indicated. A–D, male habitus. Scale bars: 5 mm. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 12 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 12 Outgroup taxa used in the phylogenetic analyses, species as indicated. A, C, E, G, male distal abdominal segments, dorsal view; B, D, F, H, male distal abdominal segments, lateral view. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 7 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 7 Orotettix males, species as indicated. A, C, E, G, I, distal abdominal segments, lateral view; B, D, F, H, J, distal abdominal segments, dorsal view. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 4 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 4 Combined molecular and morphological phylogenetic analysis under parsimony criteria, using an extended implied weighting strategy. Numbers indicate branch supports (symmetric resampling).
Figure 5 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 5 Orotettix, phallic complex, in lateral (A) and dorsal views (B). Abbreviations: Ap, apodemes of cingulum; Ar, arch of aedeagus; Av, aedeagal valves; Ep, endophallic plates; E, epiphallus; L, lophi of epiphallus; Rm, rami; Sh, sheath of aedeagus.
Figure 13 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 13 Outgroup taxa used in the phylogenetic analyses, species as indicated. Phallic complex. A, D, G, J, distal portion of aedeagal valves, lateral view; B, E, H, K, distal portion of aedeagal valves, dorsal view; C, F, I, L, epiphallus, dorsal view. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 3 A in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 3 A, most parsimonious tree of the genus Orotettix (length 55, CI = 0.87, RI = 0.97) resulting from the cladistic analysis of the morphological character dataset, under equal weights. Black circles indicate unique changes and white circles indicate homoplasies. The numbers below the nodes are bootstrap support values, and those above are Bremer support values. The new species (O. sp. 1; O. sp. 2; O. sp. 3; O. sp. 4; O. sp. 5) delimited in this study based on molecular, morphological and geographical analyses are indicated in the tree. Lateral bars indicate the distribution of the specimens according to the geomorphic units of the Andes delimited by Gonzalez & Pfiffner (2012). B, geomorphological units of the Andes delimited by Gonzalez & Pfiffner (2012).
Figure 8 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 8 Orotettix males, species as indicated. A, C, E, G, I, distal abdominal segments, lateral view; B, D, F, H, J, distal abdominal segments, dorsal view. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 10 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 10 Orotettix males. Phallic complex, species as indicated. A, D, G, J, M, distal portion of aedeagal valves, lateral view; B, E, H, K, N, distal portion of aedeagal valves, dorsal view; C, F, I, L, O, epiphallus, dorsal view. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 2 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 2 Bayesian phylogenetic analysis of COI characters. Acronyms of specimens according to Table 1. Numbers on branches indicate posterior probabilities. Numbers in parentheses indicate bootstrap supports of maximum-parsimony analysis. Results of General Mixed Yule-coalescent (GMYC) analysis are represented as lateral bars with different line patterns. Each bar indicates a different cluster identified by GMYC. Solid black patterns indicate clusters which coincide with species delimitation based on results from the other molecular, morphological and geographical analyses. 1, O. andeanus; 2, O. sp. 1; 3, O. sp. 2; 4, O. hortensis; 5, O. sp. 3; 6, O. sp. 4; 7, O. carrascoi; 8, O. sp. 5; 9, O. ceballosi.
Figure 6 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 6 Orotettix males, species as indicated. A–J, habitus. Scale bars: 5 mm. Numbers indicate characters and states used in the phylogenetic analyses.
Figure 1 in Species delimitation in the Andean grasshopper genus Orotettix Ronderos & Carbonell (Orthoptera: Melanoplinae): an integrative approach combining morphological, molecular and biogeographical data
Figure 1 Geographical distribution of Orotettix species (except for O. laevis), considering all specimens examined in this study. The map was produced with QGIS 2.4 Chugiak.
Figure 2 in Integrating phylogenomic and morphological data to assess candidate species-delimitation models in brown and red-bellied snakes (Storeria)
Figure 2. Map of Storeria ranges and sampling locations, showing geographical extent of populations, and range of former species with respect to re-delimited taxa. A, previous geographical extent of Storeria occipitomaculata is shown in red; circles indicate sampling localities. The asterisk indicates the sample of Storeria 'hidalgoensis' examined for morphology, with the range of this subpopulation, now considered part of S. occipitomaculata, indicated in pink. The range of Storeria storerioides is indicated in blue, with the sampling locality indicated by a square. B, previous geographical extent of Storeria dekayi is shown in yellow, with pentagons indicating sampling localities of S. dekayi, triangles indicating Storeria victa, and a line drawn to approximate the range boundary. The asterisk in the Central American population indicates the collection location of the specimen of Storeria 'tropica' examined for morphology, which is now considered part of S. dekayi.
Figure 2 in Discovery of the male of Loxaulus hyalinus, and implications for the sympatric species Loxaulus laeta (Hymenoptera: Cynipidae: Cynipini): an integrative taxonomical case of species delimitation
Figure 2. Overview of molecular results. Left: best maximum likelihood (ML) tree based on three genes (COI, cytb and 28SD2). Black squares at nodes indicate both ≥95% posterior probability (Bayesian inference) and ≥80% bootstrap (ML) node support. White squares at nodes indicate both <95% posterior probability (Bayesian inference) and ≥80% bootstrap (ML) node support. Right: Sexual generation for each terminal indicated; grey bars indicate the assignations of individuals to candidate species for the ABGD, bPTP, BPP, and BFD approaches. Striped grey bars indicate the omission of the signalled taxa in some of the analyses.
Figure 1 in Discovery of the male of Loxaulus hyalinus, and implications for the sympatric species Loxaulus laeta (Hymenoptera: Cynipidae: Cynipini): an integrative taxonomical case of species delimitation
Figure 1. SEM pictures of Loxaulus hyalinus male: (a) head in frontal view, (b) head in dorsal view, (c) head in posterior view, (d) antenna, (e) mesosoma in dorsal view, (f) head and mesosoma in lateral view, (g) radial cell, (h) metasoma.
Figure 3 in Discovery of the male of Loxaulus hyalinus, and implications for the sympatric species Loxaulus laeta (Hymenoptera: Cynipidae: Cynipini): an integrative taxonomical case of species delimitation
Figure 3. Summarised tree of the terminals (A–D) and nodes (I–III) recovered from the BPP analyses. Results of the BPP analyses for the three subsets used (1–3). For each subset, the four models of priors (M1–M4) are given, with varying values of population size (θ) and divergence time (τ). Each model was iterated by changing between two algorithms, A0 and A1. The first rows correspond to the best trees recovered for each analysis. The last rows for each subset show the posterior probability support for every node (I–III) in the given subset.
Figure 3 in Shedding light on species boundaries in small endogeic animals through an integrative approach: species delimitation in the centipede Clinopodes carinthiacus (Chilopoda: Geophilidae) in the south-eastern Alps
Figure 3. Subdivision of specimens into candidate species according to a model-based cluster analysis through normal mixture models on ten morphological characters (Table 2). The ventral view of the forcipular segment is illustrated for representative specimens of the candidate species. Denticles are indicated by arrowheads. The lower panel shows Bayesian information criterion (BIC) values of different models (coded as in the paper by Scrucca et al., 2016) in relation to the hypothetical number of candidate species.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.