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230 results for “interactive map”
Gene Enrichment Map Data from gProfiler Analysis - Selected MPK Interactions of Arabidopsis thaliana
<p>Gene enrichment analysis results for the selected predicted MPK interactions are included in the supplementary materials.</p>
Clusters of interactions common between the Parkinson's disease map and the Ageing map
<p>This set of files was generated using the script demonstrating the use of MINERVA Net repository.</p> <p>The script is available under:</p> <p><a href="https://gitlab.lcsb.uni.lu/minerva/api-scripts/-/blob/master/R/API-minervanet.R">https://gitlab.lcsb.uni.lu/minerva/api-scripts/-/blob/master/R/API-minervanet.R</a></p> <p>The diagrams should be opened with the CellDesigner software (<a href="https://www.celldesigner.org/">https://www.celldesigner.org/</a>).</p>
Supplementary Material to "Identifying major research themes in Sport Science" (Interactive Science Maps)
<p><strong>Links to interactive maps</strong></p> <p>(1) Link: <strong><a href="https://app.vosviewer.com/?map=https://drive.google.com/uc?id=182n1HEZygAoS_9Caxj83hi27y41N6SWm&item_size=4">World Map</a></strong> (<a href="https://tinyurl.com/2zufzslg">https://tinyurl.com/2zufzslg</a>)</p> <p>(2) Link: <strong><a href="https://app.vosviewer.com/?map=https://drive.google.com/uc?id=182n1HEZygAoS_9Caxj83hi27y41N6SWm&item_size=5&item_size_variation=0.4&scale=0.9">Sport Science Map</a></strong> (<a href="https://tinyurl.com/2fztyjhf">https://tinyurl.com/2fztyjhf</a>)</p>
Multi-Nucleic Acid Interaction Mapping in Single Cell (MUSIC) for simultanouse chromatin, RNA-chromatin and transcriptome mapping at single cell resolution
<p><a href="https://doi.org/10.1101/2023.06.28.546457">MUSIC manuscript:</a> Joint profiling of multiplex chromatin interactions, gene expression, and RNA-chromatin associations in single cells of the human brain.</p> <p>MUSIC-docker is the customized pipeline to process the raw fastq files to bam files: http://sysbiocomp.ucsd.edu/public/wenxingzhao/MUSIC_docker/intro.html.</p> <p>Each bam file records the final output of our single cell mixed species analysis. Read name recods the cell barcode, complex barcode and I7 index. For each DNA/RNA read, read header contains <code>raw read name</code>| <code>BC3</code>_<code>BC2</code>_<code>BC1</code> - <code>10x barcode</code> # <code>UMI</code>. Details of the read name can be found here: http://sysbiocomp.ucsd.edu/public/wenxingzhao/MUSIC_docker/step.html#demultiplexing.</p> <p>merge_DNA [RNA]_human [mouse].sort.bam: bam file of DNA [RNA] reads from the mix species library (H1+E14) that can uniquely mapped to the human [mouse] genome. PCR duplicates have been removed. </p> <p> </p> <p> </p> <p> </p> <p> </p>
Data from: A global genetic interaction network maps a wiring diagram of cellular function
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A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing
<p>The Krogan Laboratory used affinity-purification mass spectrometry to identify 332 high confidence SARS-CoV-2-human protein-protein interactions, including 67 druggable human proteins or host factors targeted by 69 known drugs. Results may be relevant to antiviral drug production.</p>
Data from: Proteomic analysis of barley mapping population subjected to drought identifies proteins with genotype×environment interaction and pQTLs
Drought is one of the major abiotic stresses negatively influencing crop yield and is a serious issue in modern agriculture. To achieve further substantial crop improvements in terms of drought resistance it is necessary to incorporate scientific results into breeding strategies. However, most of the data on plant drought responses arises mostly from small-scale studies and, therefore, its use in breeding programs is very limited. Here, we present the results of the large-scale proteomic analysis performed on barley recombinant inbred lines (RILs) and their parental genotypes subjected to drought, applied shortly before tillering. The conducted proteomic analyses enabled us to monitor drought-induced proteome changes in leaf and root tissue, and to identify proteins that responded to drought in a genotype-specific manner, for instance Rubisco activase, luminal binding protein, phosphoglycerate mutase, glutathione S-transferase, heat shock proteins as well as enzymes involved in phenylpropanoid biosynthesis. We also demonstrated feasibility of incorporating proteomic data resulting from large-scale study into genetic linkage analysis, which constitutes a fundament in biotechnology-driven breeding strategies.
Data from: Mapping the imprint of biotic interactions on β-diversity
Investigating how trophic interactions influence the β-diversity of meta-communities is of paramount importance to understanding the processes shaping biodiversity distribution. Here, we apply a statistical method for inferring the strength of spatial dependencies between pairs of species groups. Using simulated community data generated from a multi-trophic model, we showed that this method can approximate biotic interactions in multi-trophic communities based on β-diversity patterns across groups. When applied to soil multi-trophic communities along an elevational gradient in the French Alps, we found that fungi make a major contribution to the structuring of β-diversity across trophic groups. We also demonstrated that there were strong spatial dependencies between groups known to interact specifically (e.g. plant-symbiotic fungi, bacteria-nematodes) and that the influence of environment was less important than previously reported in the literature. Our method paves the way for a better understanding and mapping of multi-trophic communities through space and time.
On the utility of Cas13d for genetic interaction mapping
<p>Scripts to calculate tau values and genetic interaction (GI) scores in knockdown experiments using Cas13d. </p>
Evaluation of Cas13d as a tool for genetic interaction mapping
<p>This zenodo upload contains the scripts for the calculation of tau values and genetic interaction scores (GI) in knockdown experiments with Cas13d. In addition to the scripts for determining the tau values and GI scores (Calculate_tau_and_GI.zip), the script for creating the plots used and the reference files for the publication “On the utility of Cas13d for genetic interaction mapping” are also provided. Further information can be found in the README. </p>
Interactive maps: Unveiling hidden risks in healthcare from flood-induced transportation disruption
<p>We provide interactive maps in HTML format, viewable in standard web browsers, to illustrate the impact of flood events (indicated by the index in the title) on specific regions, focusing on hospitals at risk. This collection includes 321 maps, each representing a hospital where the change in service population exceeds 0.3. Hovering over the hospital symbols (marked with a plus) reveals meta information, including service population details before and after a flood event. Additionally, hovering over the polygons provides further insights into the hospital in focus, offering a detailed view of each facility’s status and impact zone.</p>
Data from: Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions
Mapping hybrid defects in contact zones between incipient species can identify genomic regions contributing to reproductive isolation and reveal genetic mechanisms of speciation. The house mouse features a rare combination of sophisticated genetic tools and natural hybrid zones between subspecies. Male hybrids often show reduced fertility, a common reproductive barrier between incipient species. Laboratory crosses have identified sterility loci, but each encompasses hundreds of genes. We map genetic determinants of testis weight and testis gene expression using offspring of mice captured in a hybrid zone between M. musculus musculus and M. m. domesticus. Many generations of admixture enables high-resolution mapping of loci contributing to these sterility-related phenotypes. We identify complex interactions among sterility loci, suggesting multiple, non-independent genetic incompatibilities contribute to barriers to gene flow in the hybrid zone.
Mapping and modeling human colorectal carcinoma interactions with the tumor microenvironment
<p>This dataset can be interactively explored with VisCello (https://github.com/qinzhu/VisCello). Please install VisCello and use e.g. "cello("path_to/hcc_main_cello")" to load the human colon cancer single cell dataset.</p> <p> </p>
Processed dataset used to train models in the study "Integrative modeling of lncRNA-chromatin interaction maps reveals diverse mechanisms of nuclear retention"
<p>The processed dataset used to train models in the study "Integrative modeling of lncRNA-chromatin interaction maps reveals diverse mechanisms of nuclear retention".</p>
Mapping Stress and Pain Interactions (G072323N)
ClinicalTrials.gov study NCT06892977. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Data from: Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions
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Data from: Mapping the imprint of biotic interactions on β-diversity
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Data from: Proteomic analysis of barley mapping population subjected to drought identifies proteins with genotype×environment interaction and pQTLs
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Interactive maps of Iridaceae family in Bulgaria
<p>Pack of interactive distribution maps of Iridaceae in Bulgaria</p> <p>The maps are accessible from here: https://botanica.gallery/wp/archives/27276</p> <p> </p>
NMR Data: Atomic Resolution Map of the solvent interactions driving SOD1 unfolding in CAPRIN1 condensates
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ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.