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42 results for “marine monitoring”
Advances in metabarcoding techniques bring us closer to reliable monitoring of the marine benthos
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Data from: Monitoring spawning activity in a southern California marine protected area using molecular identification of fish eggs
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Data from: Long term marine biodiversity monitoring in coastal Antarctica: Are fewer rare species recruiting?
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A national scale BioBlitz using citizen science and eDNA metabarcoding for monitoring coastal marine fish
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Crystal Cove Marine Conservation Area Citizen Science Monitoring
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Crystal Cove Marine Conservation Area Citizen Science Monitoring
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Crystal Cove Marine Conservation Area Citizen Science Monitoring
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Supplementary material 2 from: Van den Bulcke L, De Backer A, Ampe B, Maes S, Wittoeck J, Waegeman W, Hostens K, Derycke S (2021) Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection. Metabarcoding and Metagenomics 5: e71107. https://doi.org/10.3897/mbmg.5.71107
Tables S1–S8
Supplementary material 1 from: Van den Bulcke L, De Backer A, Ampe B, Maes S, Wittoeck J, Waegeman W, Hostens K, Derycke S (2021) Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection. Metabarcoding and Metagenomics 5: e71107. https://doi.org/10.3897/mbmg.5.71107
Figures S1–S14
Figure 5 from: Assou D, Segniagbeto GH, Radji R, Akiti J, Pando F (2018) Monitoring data of marine turtles on the Togolese coast during 2012–2013. ZooKeys 779: 109-118. https://doi.org/10.3897/zookeys.779.26967
Figure 5 Sea turtle species considered in the survey: aLepidochelysolivaceabCheloniamydascDermochelyscoriacea.
Figure 5 from: Jung J, Alfonsi E, Méheust E, Fuchs S, Carpentier F, Quillivic Y, Viricel A, Hassani S (2013) The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast. ZooKeys 365: 5-24. https://doi.org/10.3897/zookeys.365.5873
Figure 5 - Non-metric Multidimensional Scaling plot of K2P-distance between MCR sequences of Stenella coeruleoalba (in blue), Delphinus delphis (in red) and Stenella frontalis (in green). Individuals of each species are clearly clustered together, and unidentified samples (in black) stranded along the coasts of Brittany group with one of the three species. Dd280211A (Ds1), Ds130210 (Ds3), Ds230409 (Ds4), Ds250412 (Ds5) and Sc210910 (Ds6) are putatively identified as Delphinus delphis, whereas Ds080410 (Ds2) would more likely belong to Stenella coeruloalba.
Figure 2 from: Jung J, Alfonsi E, Méheust E, Fuchs S, Carpentier F, Quillivic Y, Viricel A, Hassani S (2013) The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast. ZooKeys 365: 5-24. https://doi.org/10.3897/zookeys.365.5873
Figure 2 - Organization of the stranding network in Brittany (North West of France) and localization of the stranded specimens used in this study. Numbers indicate the 18 geographic sections of the stranding network in this area. The map was drawn using ArcGIS Desktop: Release 9.3.1 (Environmental Systems Research Institute, Redlands, CA, USA) with WGS 84 coordinates.
Figure 1 from: Jung J, Alfonsi E, Méheust E, Fuchs S, Carpentier F, Quillivic Y, Viricel A, Hassani S (2013) The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast. ZooKeys 365: 5-24. https://doi.org/10.3897/zookeys.365.5873
Figure 1 - Numbers of different species of marine mammals stranded along the coasts of Brittany (North West of France) in the period 2003–2012.
Figure 4 from: Jung J, Alfonsi E, Méheust E, Fuchs S, Carpentier F, Quillivic Y, Viricel A, Hassani S (2013) The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast. ZooKeys 365: 5-24. https://doi.org/10.3897/zookeys.365.5873
Figure 4 - Examples of marine mammals stranded along the coasts of Brittany and the species-level identifications of which were determined or confirmed thanks to DNA barcoding. A Sample Ms250511, stranded on the "Île de Sein" during May 2011, and identified as a Balaenoptera physalus B Sample Ds160111, stranded on the Ushant Island during January 2011, and identified as a Grampus griseus C Sample Ds130211, stranded on the Ushant Island in February 2011, and identified as belonging to the Delphininae subfamily (putatively identified as a Delphinus delphis on the nMDS plot in Figure 5) D Sample Ds080410 stranded on the Ushant Island during April 2010, and identified as belonging to the Delphininae (putatively identified as a Stenella coeruleoalba on the nMDS plot in Figure 5).
Figure 3 from: Jung J, Alfonsi E, Méheust E, Fuchs S, Carpentier F, Quillivic Y, Viricel A, Hassani S (2013) The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast. ZooKeys 365: 5-24. https://doi.org/10.3897/zookeys.365.5873
Figure 3 - Neighbour-Joining tree of major species of marine mammals, based on K2P-distances calculated from 507 bp of COI. All sequences come from the IMMB project on BOLD, and only 5 harbour porpoise and 5 grey seal samples among those of the IMMB project have been included in the analysis.
Figure 6 from: Jung J, Alfonsi E, Méheust E, Fuchs S, Carpentier F, Quillivic Y, Viricel A, Hassani S (2013) The use of DNA barcoding to monitor the marine mammal biodiversity along the French Atlantic coast. ZooKeys 365: 5-24. https://doi.org/10.3897/zookeys.365.5873
Figure 6 - Haplotype network established from the COI sequences of 45 harbour porpoises stranded along the Atlantic coast of France (Appendix 1). Numbers on a line connecting two haplotypes correspond to the sequence position of the mutation differentiating these haplotypes. Two mitochondrial haplogroups appear (black circles - grey circles), that group the same individuals as the haplogroups alpha and beta determined using MCR polymorphisms and described in Alfonsi et al. (2012).
Figure 2 from: Assou D, Segniagbeto GH, Radji R, Akiti J, Pando F (2018) Monitoring data of marine turtles on the Togolese coast during 2012–2013. ZooKeys 779: 109-118. https://doi.org/10.3897/zookeys.779.26967
Figure 2 Monitoring program sites (Segniagbeto et al. 2017).
Figure 3 from: Assou D, Segniagbeto GH, Radji R, Akiti J, Pando F (2018) Monitoring data of marine turtles on the Togolese coast during 2012–2013. ZooKeys 779: 109-118. https://doi.org/10.3897/zookeys.779.26967
Figure 3 Distribution of marine turtle occurrences by species on the Togolese coast.
Figure 1 from: Assou D, Segniagbeto GH, Radji R, Akiti J, Pando F (2018) Monitoring data of marine turtles on the Togolese coast during 2012–2013. ZooKeys 779: 109-118. https://doi.org/10.3897/zookeys.779.26967
Figure 1 Region of the record Datasets of sea turtles (coastal areas of Ghana, Togo and Benin).
Figure 4 from: Assou D, Segniagbeto GH, Radji R, Akiti J, Pando F (2018) Monitoring data of marine turtles on the Togolese coast during 2012–2013. ZooKeys 779: 109-118. https://doi.org/10.3897/zookeys.779.26967
Figure 4 Distribution of marine turtle occurrences by species and location on the Togolese coast.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.