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40 results for “microbial production”
Using Gut Microbial Gbu Gene Testing to Estimate Host TMAO Production Capacity
ClinicalTrials.gov study NCT05980884. IPD Sharing: NO. Countries: 1. Publications: 1.
Transmission of beneficial yeasts accompanies offspring production in Drosophila – an initial evolutionary stage of insect maternal care through manipulation of microbial load?
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Data from: Effects of between-site variation in soil microbial communities and plant-soil feedbacks on the productivity and composition of plant communities
A critical challenge in the science and practice of restoration ecology is to understand the drivers of variation in restoration outcomes. Soil microbial communities may have a role in explaining this variation due to both site-to-site variation in the composition of soil microbial communities and due to variation that can arise due to plant-soil feedbacks. We tested the relative importance of between-site variation in soil microbial community composition and plant-soil feedbacks in shaping plant community composition and ecosystem function. We used a standard two-phase plant-soil feedback design. Soil inoculum was collected from four tallgrass prairie sites. Then, soils were conditioned separately with nine plant species, and conditioned soils were used to inoculate prairie community mesocosms. In a separate experiment using soil from an additional site we tested conditioned soil samples for the abundance of arbuscular mycorrhizal fungi (AMF) and rhizobia. Site of soil origin and plant-soil feedbacks both had effects on the composition and productivity of our plant communities, and the magnitudes of these effects were similar. We also found changes in the abundance of AMF and rhizobia due to plant-soil feedbacks and that AMF abundance were associated with differences in plant community composition. These results indicate that the composition of soil communities due to site-to-site variation and plant-soil feedbacks are both important determinants of plant community composition and productivity. Our results also suggest that AMF and rhizobia are key microbial functional groups underlying plant-soil feedback effects. Synthesis and applications. Site-to-site variation in soil communities can explain some variation in restoration of plant communities. Since plant-soil feedback effects of restored plant species do not overcome this variation, knowledge of soil microbial communities present at a site prior to initiation of restoration efforts may improve predictability of restoration outcomes, and reintroduction of some components of the soil community may be necessary to achieve restoration goals. Additionally, by understanding variation due to plant-soil feedbacks, restoration practitioners can choose plant species for reintroduction that will create favourable soil conditions, including promoting microbial mutualists. Plant-soil feedbacks should also make it possible to increase heterogeneity in soil microbial communities, leading to increases in beta diversity in plant communities.
Data from: Effects of between-site variation in soil microbial communities and plant-soil feedbacks on the productivity and composition of plant communities
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Impact of phosphate limitation on PHBV production and microbial community dynamics fed with synthetic fermentation digestate [18S]
GEO Series GSE302521. activated sludge metagenome. 12 samples. Type: Other.
Impact of phosphate limitation on PHBV production and microbial community dynamics fed with synthetic fermentation digestate [ITS]
GEO Series GSE302520. activated sludge metagenome. 2 samples. Type: Other.
Effects of Oral Probiotic Product on Vaginal Microbial Community and Parameters of Vaginal Health
ClinicalTrials.gov study NCT03543982. IPD Sharing: Not stated. Countries: 1. Publications: 0.
The Colonic Transit Time: a Modifiable Determinant of Intestinal Production and Uptake of Microbial Metabolites?
ClinicalTrials.gov study NCT01869751. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Development of Microbial Metabolism Gene Tests for Facilitating Precision Health and Preventive Medicine-Evaluation of TMAO Production in Human Body From High-carnitine Diet by Fecal Gbu Gene Testing
ClinicalTrials.gov study NCT07322575. IPD Sharing: NO. Countries: 1. Publications: 0.
Microbial Product Cocktails for Personalized Cancer Immunotherapy
GEO Series GSE298841. Homo sapiens. 10 samples. Type: Protein profiling by protein array.
The islet resident macrophage is in an inflammatory state and senses microbial products in blood
GEO Series GSE100067. Mus musculus. 19 samples. Type: Expression profiling by high throughput sequencing.
Impact of phosphate limitation on PHBV production and microbial community dynamics fed with synthetic fermentation digestate [16S]
GEO Series GSE302519. activated sludge metagenome. 12 samples. Type: Other.
Spatial characterization of microbial communities on multi-species leafy greens grown simultaneously in the Veggie vegetable production systems on the International Space Station VEG-03D
Investigates the microbial communities of plants and Veggie pillow components with culturable and non-culturable methods providing qualitative and quantitative data. This studies also stresses the food safety component of fresh crops grown on the ISS. The VEG-03D technology demonstration was completed achieving simultaneous multi-species plant growth within a Veggie unit on the International Space Station (ISS). Microbiological characterization using molecular and culture-based methods was performed on leaves and roots from two harvests of three leafy greens, red romaine lettuce (Lactuca sativa cv. ‘Outredgeous’); mizuna mustard, (Brassica rapa var japonica); and green leaf lettuce, (Lactuca sativa cv. Waldmann’s) and associated rooting pillow components and Veggie chamber surfaces. Culture based enumeration and pathogen screening indicated the leafy greens were safe for consumption. Surface samples of the Veggie facility and plant pillows revealed low counts of bacteria and fungi and are commonly isolated on ISS. Community analysis was completed with 16S rRNA amplicon sequencing. Comparisons between pillow components, and plant tissue types from VEG-03D, E, and F revealed higher diversity in roots and rooting substrate than the leaves and wick. This work provides valuable information for food production-related research on the ISS and the impact of the plant microbiome on this unique closed environment.
Spatial characterization of microbial communities on multi-species leafy greens grown simultaneously in the Veggie vegetable production systems on the International Space Station VEG-03F
Investigates the microbial communities of plants and Veggie pillow components with culturable and non-culturable methods providing qualitative and quantitative data. This studies also stresses the food safety component of fresh crops grown on the ISS. The VEG-03F technology demonstration took place within a Veggie unit on the International Space Station (ISS). Microbiological characterization using molecular methods was performed on leaves and roots from one harvest of red romaine lettuce (Lactuca sativa cv. ‘Outredgeous’) and associated rooting pillow components and Veggie chamber surfaces. Culture based enumeration and pathogen screening indicated the leafy greens were safe for consumption. Surface samples of the Veggie facility and plant pillows revealed low counts of bacteria and fungi and are commonly isolated on ISS. Community analysis was completed with 16S rRNA amplicon sequencing. Comparisons between pillow components, and plant tissue types from VEG-03D, E, and F revealed higher diversity in roots and rooting substrate than the leaves and wick. This work provides valuable information for food production-related research on the ISS and the impact of the plant microbiome on this unique closed environment.
Spatial characterization of microbial communities on multi-species leafy greens grown simultaneously in the Veggie vegetable production systems on the International Space Station VEG-03E
Investigates the microbial communities of plants and Veggie pillow components with culturable and non-culturable methods providing qualitative and quantitative data. This studies also stresses the food safety component of fresh crops grown on the ISS. The VEG-03E technology demonstration was completed within a Veggie unit on the International Space Station (ISS). Microbiological characterization using molecular and culture-based methods was performed on leaves and roots from two harvests of green leaf lettuce, (Lactuca sativa cv. Waldmann’s) and associated rooting pillow components and Veggie chamber surfaces. Culture based enumeration and pathogen screening indicated the leafy greens were safe for consumption. Surface samples of the Veggie facility and plant pillows revealed low counts of bacteria and fungi and are commonly isolated on ISS. Community analysis was completed with 16S rRNA amplicon sequencing. Comparisons between pillow components, and plant tissue types from VEG-03D, E, and F revealed higher diversity in roots and rooting substrate than the leaves and wick. This work provides valuable information for food production-related research on the ISS and the impact of the plant microbiome on this unique closed environment.
Integrated Base Editing and Microfluidics Boost Microbial Lipid Production from Lignin
GEO Series GSE306066. Curvularia clavata. 12 samples. Type: Expression profiling by high throughput sequencing.
Enhanced polyhydroxyalkanoates production from Mixed Microbial Culture through Short Settling Aerobic Dynamic Feeding: improved selection and bulking resilience [18S]
GEO Series GSE303499. activated sludge metagenome. 9 samples. Type: Other.
Nitrogen source-driven regulation of Irpex lacteus for enhanced lignocellulose degradation and microbial protein production in wheat straw
GEO Series GSE297384. Irpex lacteus. 9 samples. Type: Expression profiling by high throughput sequencing.
Enhanced polyhydroxyalkanoates production from Mixed Microbial Culture through Short Settling Aerobic Dynamic Feeding: improved selection and bulking resilience [16S]
GEO Series GSE303497. activated sludge metagenome. 9 samples. Type: Other.
Enhanced polyhydroxyalkanoates production from Mixed Microbial Culture through Short Settling Aerobic Dynamic Feeding: improved selection and bulking resilience [ITS]
GEO Series GSE303500. activated sludge metagenome. 4 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.