Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
45
datasets available to search
ShareScore release 0.9.0
Dataset results
45 results for “mitogenome sequencing”
Data from: Fin whale (Balaenoptera physalus) mitogenomics: a cautionary tale of defining sub-species from mitochondrial sequence monophyly
Open the record for dataset details and reuse information.
The invasive land flatworm Arthurdendyus triangulatus: repeated sequences in the mitogenome, extra-long cox2 gene and paralogous rRNA clusters
<p>Fasta and tbl files for the mitogenomes of various Rhynchodeminae</p>
Figure 1 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 1 Original drawing presented by Latreille (1811) illustrating the description of Reduvius dimidiatus.
Figure 4 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 4 Pairwise Kimura 2-parameter distances between publicly available sequences and sequences from the neotype. Dashed lines indicate the barcode-like gap for each marker.
Supplementary material 4 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Mitochondrial genome gene table
Figure 6 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 6 Pronotum of Triatoma dimidiata neotype (male). Detail of the anterior lobe of the pronotum, showing the discal tubercle (right arrow) and lateral tubercle (left arrow).
Supplementary material 1 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Specimens metadata
Supplementary material 3 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
R code for barcode-like and cluster analyses 3
Figure 8 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
Figure 8 Legs of Triatoma dimidiata neotype (male) A detail of the pair of subapical denticles present on the forelegs B pair of subapical denticles present on the midlegs. Hindlegs do not present denticles.
Supplementary material 2 from: Justi SA, Dale C (2021) Designation of the neotype of Triatoma dimidiata (Latreille, 1811) (Hemiptera, Reduviidae, Triatominae), with full integrated redescription including mitogenome and nuclear ITS-2 sequences. ZooKeys 1076: 9-24. https://doi.org/10.3897/zookeys.1076.72835
GenBank numbers list
Figure 1 from: Conrado AC, Arruda H, Stanton DWG, James SW, Kille P, Brown G, Silva E, Dupont L, Taheri S, Morgan AJ, Simões N, Rodrigues A, Montiel R, Cunha L (2017) The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning. ZooKeys 688: 1-13. https://doi.org/10.3897/zookeys.688.13721
Figure 1 - The mitochondrial genome of Pontoscolex corethrurus (Müller, 1857). Gene order and positions are shown, including the putative control region. IUPAC single letter codes are used to identify transfer RNA. The L1, L2, S1, and S2 transfer RNAs are differentiated on the basis of their anti-codons TAG, TAA, TCT, and TGA, respectively.
Figure 2 from: Conrado AC, Arruda H, Stanton DWG, James SW, Kille P, Brown G, Silva E, Dupont L, Taheri S, Morgan AJ, Simões N, Rodrigues A, Montiel R, Cunha L (2017) The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning. ZooKeys 688: 1-13. https://doi.org/10.3897/zookeys.688.13721
Figure 2 - Phylogenetic relationships among phylum Annelida based on the combined 13,416 bp nucleotide positions. Total alignment length is greater than the combined P. corethrurus protein coding and rRNA sequence lengths due to overlapping protein coding sequences that are subsequently concatenated, and indel regions in the alignment. The posterior probability value of BI analyses and bootstrap support values of ML analyses (in the order: BI, ML) are indicated near the branches.
Figure 5. The polymorphism sites among the 25 in Biased heteroplasmy within the mitogenomic sequences of Gigantometra gigas revealed by sanger and high-throughput methods
Figure 5. The polymorphism sites among the 25 different cloning sequences of cox1. Weblogo 3.0 was used to show the nucleotide content of 25 cloning sequences of cox1 (Crooks et al., 2004). The abscissa stands for the number of the bases, while the ordinate stands for the proportion of nucleotide content provided by the 25 different cloning sequences in the same position. The sequence length between the two arrows stands for the barcode fragment size of cox1. The black triangles show the polymorphism positions in the 25 different cloning sequences, the red circles show the positions exhibited obvious second-peak in the results of direct Sanger sequencing without cloning, and the yellow stars show the different sites between the results of Sanger and HTS.
Figure 2 in Biased heteroplasmy within the mitogenomic sequences of Gigantometra gigas revealed by sanger and high-throughput methods
Figure 2. The different nucleotides of all 13 PCGs in mitogenomes obtained by Sanger and HTS sequencing. The different sequences of HTS sequencing are separately compared with the consequence of Sanger method. The horizontal axis stands for the nucleotide position, of which the sequences of 13 PCGs are ordered according to the circular mitochondrial DNA from nad2 to nad1 in the clockwise direction. The vertical axis stands for the number of the different sites in the sequences of 13 PCGs, and the different nucleotide in each site of all three HTS sequences compared with Sanger is shown in the corresponding panel.
Figure 3 from: Zhao L, Gao T, Lu W (2015) Complete mitochondrial DNA sequence of the endangered fish (Bahaba taipingensis): Mitogenome characterization and phylogenetic implications. ZooKeys 546: 181-195. https://doi.org/10.3897/zookeys.546.5964
Figure 3 - Phylogenetic relationships among Sciaenidae species based on the combined 9988 bp nucleotide positions. The posterior probability value of BI analyses and bootstrap support values of ML analyses (in the order: BI, ML) are indicated near the branches.
Figure 2 from: Zhao L, Gao T, Lu W (2015) Complete mitochondrial DNA sequence of the endangered fish (Bahaba taipingensis): Mitogenome characterization and phylogenetic implications. ZooKeys 546: 181-195. https://doi.org/10.3897/zookeys.546.5964
Figure 2 - Potential secondary structure of the origin of L-strand replication (OL) of Bahaba taipingensis mtDNA.
Supplementary material 3 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
Cyt b plus nuclear markers phylogenetic analysis
Supplementary material 2 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
Heteromormyrus pauciradiatus holotype NMW 22417 mitogenome reconstruction
Supplementary material 1 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
List of Heteromormyrus specimens examined and/or included in molecular analyses
Supplementary material 4 from: Sullivan JP, Hopkins CD, Pirro S, Peterson R, Chakona A, Mutizwa TI, Mukweze Mulelenu C, Alqahtani FH, Vreven E, Dillman CB (2022) Mitogenome recovered from a 19 th Century holotype by shotgun sequencing supplies a generic name for an orphaned clade of African weakly electric fishes (Osteoglossomorpha, Mormyridae). ZooKeys 1129: 163-196. https://doi.org/10.3897/zookeys.1129.90287
COI phylogenetic analysis
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.