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Fig. 1 in Taxonomic Assessment of Acetes indicus H. Milne Edwards, 1830 (Crustacea, Decapoda, Sergestoidea) as Revealed from Molecular and Morphological Analyses: Re-validation of A. spiniger Hansen, 1919 and Designation of a New Species
Fig. 1. Bayesian inference trees of Acetes indicus, A. omorii sp. nov., and A. spiniger with the outgroups of other congeneric species based on the mitochondrial 16S (a) and mitochondrial COI (b) markers. Values at the nodes are Bayesian posterior probabilities/Maximum Likelihood/Neighbor Joining support values. For the haplotype abbreviations, see Table 1.
Fig. 5 in Taxonomic Assessment of Acetes indicus H. Milne Edwards, 1830 (Crustacea, Decapoda, Sergestoidea) as Revealed from Molecular and Morphological Analyses: Re-validation of A. spiniger Hansen, 1919 and Designation of a New Species
Fig. 5. Acetes omorii Hanamura, Imai and Hardianto sp. nov. (a–g) holotype male (cl 5.3 mm) (NSMT-Cr 31621), and (b–d) paratype female (cl 6.0 mm) from Matang Mangrove, Malaysia (NSMT-Cr 31622): a, cephalothorax, lateral; b, same, anterior part enlarged; c, right posterior part of abdomen, lateral; d, posterior part of telson, dorsal; e, basal segments of third pereopod and genital coxa; f, capitulum of petasma, posterior; g, right endopod of second pleopod, mesial; h, anterior part of body.
Fig. 4. Acetes indicus H. Milne Edwards, 1830 in Taxonomic Assessment of Acetes indicus H. Milne Edwards, 1830 (Crustacea, Decapoda, Sergestoidea) as Revealed from Molecular and Morphological Analyses: Re-validation of A. spiniger Hansen, 1919 and Designation of a New Species
Fig. 4. Acetes indicus H. Milne Edwards, 1830. (a–g) male (cl 5.6 mm) from Kumia-Sandwip Ship Ghat Bangladesh, and (h–j) female (cl 7.3 mm) from same locality (NSMT-Cr 31616): a, anterior part of cephalothorax, lateral; b, posterior part of abdomen, lateral; c, posterior part of telson, dorsal; d, left lower antennular flagellum; e, basal segments of third pereopod and genital coxa, ventral; f, right petasma, posterior; g, same, capitulum; h, anterior part of cephalothorax, lateral; i, basal segments of third pereopod and third and fourth abdominal sternites, ventral; j, lateral profile showing channels and sternites between third and fourth thoracic somites. Abbreviations: gc, genital coxa; iiist and ivst, third and fourth thoracic sternites, respectively.
Fig. 7 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 7. Maximum likelihood (ML) phylogenetic tree based on the small subunit rRNA (SSU rRNA) gene sequences. Numbers at the nodes represent the bootstrap values of ML analyses and posterior probability of BI analyses. Fully supported (100%/1.00) branches are marked with solid circles. Asterisk (*) represents support values less than 50% and the disagreement between BI and the reference ML tree. The scale bar corresponds to two substitutions per 100 nucleotide positions. The newly sequenced species in the present study is shown in bold.
Fig. 4 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 4. Divisional morphogenesis in Tachysoma pellionellum (after protargol staining). (A, B) Ventral views of an early divider. Note the basal bodies in the oral primordium forming an elongated field; arrowheads show the postoral ventral cirri which remain intact only for a short time. (C, D) Ventral views of an early divider. Arrowheads show the developing FVT-anlagen. (E, F) Ventral and dorsal view of a divider in early divisional stage. In E, arrow marks the old paroral which is dedifferentiating, double-arrowheads shows the UM-anlage formed to the right of the oral primordium as a long streak of basal bodies and arrowhead indicates the right marginal row anlagen developing intrakinetally; in F, arrows show the intrakinetal formation of the dorsal kineties anlagen 4 in the dividing cell. (G, H) Ventral and dorsal view of a divider in early divisional stage. In G, arrows show the first frontal cirri separating from the undulating membranes anlagen; arrowheads mark the left marginal row anlagen developing intrakinetally; in H, arrows show the intrakinetal formation of the dorsal kineties anlagen 4 in the dividing cell. DKA, dorsal kineties anlagen; II–VI, frontoventral–transverse cirral anlagen; Ma, macronuclear nodules; Mi, micronucleus; OP, oral primordium; RMA, right marginal anlage. Scale bars: 15 µm (A, C) and 35 µm (B, D, E–H).
Fig. 1 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 1. Map of North America (the background from Google earth) showing the sampling sites. (A, B) Map showing Stone Mountain State Park, North Carolina, USA. (C, D), where Tachysoma pellionellum was collected.
Fig. 3 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 3. Photomicrographs of Tachysoma pellionellum in vivo (A–D) and after protargol staining (E–H). (A–D) Ventral views of typical individuals; arrow in Fig. B marks the contractile vacuole, arrows in Fig. C show the refringent globules and arrowheads demonstrate the dorsal cilia. (E) Ventral view of the infraciliature; showing the frontoventral (in rectangle) and postoral ventral cirri (in circle). (F) Ventral view of anterior portion of infraciliature. (G) Ventral view of posterior portion of infraciliature, showing the pretransverse ventral cirri (dashed line). (H) Dorsal view of the infraciliature, showing the dorsal kineties (arrowheads). AZM, adoral zone of membranelles; BC, buccal cirrus; CV, contractile vacuole; E, endoral; FC, frontal cirri; FVC, frontoventral cirri; LMR, left marginal row; Ma, macronuclear nodules; P, paroral; PVC, postoral ventral cirri; PTVC, pretransverse ventral cirri; RMR, right marginal row; TC, transverse cirri; Scale bars: 55 µm (A), 35 µm (E) and 15 µm (F, G).
Fig. 2 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 2. Morphology of Tachysoma pellionellum from life (A–C) and after protargol staining (D–F). (A) Ventral view of a representative individual. (B, C) Detail of cell, arrows indicate the refringent globules and arrowhead shows the food vacuole. (D) Detailed ventral view of the anterior region, showing the frontoventral (in rectangle) and postoral ventral cirri (in ellipse). (E, F) Ciliature of ventral and dorsal side and nuclear apparatus, the dashed ellipse depicts the postoral ventral cirri; arrowhead indicates the micronucleus. AZM, adoral zone of membranelles; BC, buccal cirrus; CV, contractile vacuole; E, endoral; FC, frontal cirri; FVC, frontoventral cirri; LMR, left marginal row; Ma, macronuclear nodules; P, paroral; PTVC, pretransverse ventral cirri; RMR, right marginal row; TC, transverse cirri; 1–6, dorsal kineties. Scale bars: 40 µm.
Fig. 6 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 6. Photomicrographs of Tachysoma pellionellum during divisional morphogenesis (after protargol staining). (A, B) Ventral views of early dividers, note the basal bodies in the oral primordia forming an elongated field; arrows show the postoral ventral cirri which remain intact. (C, D) Ventral views of early dividers. In C, arrow in the proter marks the paroral which is dedifferentiating; arrow in the opisthe shows the anlage of the undulating membranes, and arrowhead indicates the right marginal anlage; in D, arrows show the first frontal cirri separating from the anlagen of the undulating membranes, and arrowheads mark the left marginal anlagen. (E–G) Ventral and dorsal view of a middle-stage divider. In E, arrowhead shows the first frontal cirrus and arrows mark the right marginal anlagen; in G, double-arrowheads show the first frontal cirrius, arrowheads mark the left marginal anlagen, and arrows show the intrakinetal formation of the dorsal kineties anlagen 1. (H, I) Ventral and dorsal view of a late divider; arrows show the dorsal kineties 6. II–VI, FVT-anlagen; Ma, macronuclear nodules; OP, oral primordium; 2–5, dorsal kineties. Scale bars: 20 µm (B, D, F) and 45µm (I).
Fig. 5 in Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Fig. 5. Middle and late dividers of Tachysoma pellionellum, after protargol staining. (A, B) Ventral and dorsal view of a middle-stage divider. In A, arrowheads show the first frontal cirri and arrows mark the left marginal anlagen; in B, arrows mark the intrakinetal formation of the dorsal kineties anlagen 4. (C, D) Ventral and dorsal view of a mid-divider. In C, arrowheads show the first frontal cirri, arrows mark the left marginal anlagen and double-arrowheads show the anlagen of dorsal kineties; in D, arrows mark the intrakinetal formation of the dorsal kinety anlagen 4. (E, F) Ventral and dorsal view of a late divider; double-arrowheads show the dorsomarginal kineties (dorsal kineties 6) and arrowheads show the left marginal row. (G, H) Ventral and dorsal view of a late-stage divider; arrowheads show the dorsomarginal kineties (dorsal kineties 6). DKA, dorsal kineties anlagen; LMR, left marginal row; Ma, macronuclear nodules; RMA, right marginal anlage; RMR, right marginal row; 1–6, dorsal kineties. Scale bars: 45 µm.
Fig. 3 in Molecular and cytogenetic analyses of cryptic species within the Synbranchus marmoratus Bloch, 1795 (Synbranchiformes: Synbranchidae) grouping: species delimitations, karyotypic evolution and intraspecific diversification
Fig. 3. Representative ideograms of the analyzed karyomorphs of Synbranchus marmoratus showing the heterochromatic blocks, as determined by C-banding, and hybridization patterns of ribosomal sites.
Fig. 1. A in Molecular and cytogenetic analyses of cryptic species within the Synbranchus marmoratus Bloch, 1795 (Synbranchiformes: Synbranchidae) grouping: species delimitations, karyotypic evolution and intraspecific diversification
Fig. 1. A map showing the Synbranchus marmoratus specimen collection sites. Numbers indicate the sample locality, whereas symbols represent the karyomorphs found at each locality.
Fig. 4. A in Molecular and cytogenetic analyses of cryptic species within the Synbranchus marmoratus Bloch, 1795 (Synbranchiformes: Synbranchidae) grouping: species delimitations, karyotypic evolution and intraspecific diversification
Fig. 4. A dendrogram representing the relationship between the sampled Synbranchus marmoratus specimens based on the mitochondrial 16S, COI and Cyt B genes. The colors represent each of the characterized karyomorphs, and the groups (IA, IB, IC, ID and II) used as references are shown on the right side. Bootstrap support (>50%) are given above the branches. Diploid numbers of the samples are given along the branches. 2n=46* Diploid number of Ophisternon aenigmaticum (Nirchio et al., 2011).
Figure 5 in Molecular and otolith shape analyses of Scorpaena spp. in the Turkish seas
Figure 5. The dissimilarity of Scorpaena species based on the Euclidian distance, grouping by hierarchical cluster analysis (UPGMA).
Figure 4 in Molecular and otolith shape analyses of Scorpaena spp. in the Turkish seas
Figure 4. Average shapes of the otoliths in the five Scorpaena species, based on mean Fourier descriptors. a) S. elongata, b) S. maderensis, c) S. porcus, d) S. notata, e) S. scrofa.
Figure 2 in Molecular and otolith shape analyses of Scorpaena spp. in the Turkish seas
Figure 2. Phylogenetic tree based on Neighbour Joining method analysis of COI gene for five Scorpaena species and their haplotypes. Only bootstrap values greater than 50 were shown (1000 replicates). D. brachypterus was used as an outgroup.
Figure 3 in Molecular and otolith shape analyses of Scorpaena spp. in the Turkish seas
Figure 3. Phylogenetic tree based on Neighbour Joining method analysis of COI sequences of Scorpaena species obtained in the present study and found in GenBank and BOLD Systems. Only bootstrap values greater than 50 are shown. D. brachypterus was used as an outgroup.
Fig. 1 in Morphological and molecular analyses of Taenia and Mesocestoides species from red foxes (Vulpes vulpes) in northwestern China
Fig. 1. Phylogenetic relationships of Taenia and Mesocestoides species from red foxes based on cox1 sequences.
Fig. 4. Phylogenetic analysis. Molecular analyses identified the specimens collected from CBW2 and CBW3 in Crassicaudiasis in three geographically and chronologically distant Cuvier's beaked whales (Ziphius cavirostris) stranded off Brazil
Fig. 4. Phylogenetic analysis. Molecular analyses identified the specimens collected from CBW2 and CBW3 as Crassicauda anthonyi, based on the ITS2 region, and supported by phylogenetic analysis. Analysis was performed by MEGA X 10.1 using the maximum likelihood method (1,000 bootstrap replicates) and included Habronema muscae as outgroup. GenBank accession numbers are listed along the species names. Branches with bootstrap support lower than 50% were collapsed. *Sequences obtained in this study.
Fig. 1 in Detection of Dirofilaria immitis via integrated serological and molecular analyses in coyotes from Texas, United States
Fig. 1. Texas locations where samples were collected, including Webb, Maverick, Jim Hogg, Haskell, Throckmorton, Hutchinson, Roberts, Reeves, and Loving counties.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.