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1,377 results for “molecular analysis”
Figure 2 in A new genus of xenophyophores (Foraminifera) from Japan Trench: morphological description, molecular phylogeny and elemental analysis
Figure 2. Shinkaiya lindsayi gen. et sp. nov. A, holotype specimen in its push core, just after collection (the authors assumed that this was a whole specimen, almost unbroken by the corer tube). B, holotype specimen out of its core. C, D, microscopic views of fragments, revealing the internal organization (G, granellare; S, stercomare). C, transversal view showing the dark stercomare strings. D, the fragment is open along a longitudinal axis, displaying the obvious whitish granellare and the stercomare. E, F, fragments of granellare stained with diaminidophenylindol (DAPI), revealing thousands of nuclei in the cytoplasm. Scale bars: 15 mm (A), 15 mm (B), 250 Mm (C), 500 Mm (D), 250 Mm (E), and 30 Mm (F).
FIGURE 15 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 15 Light micrographs of Longidorus pini Andrés and Arias, 1988 paratypes from San Martín del Pimpollar, Avila province (A–F), and the population from Nava de Francia, Salamanca province (G–M). A–C, G–I, female anterior regions. D–F, J–K, female tails. L-M, male tail with detail of spicules. Abbreviations: a = anus; gr = guiding ring; sp = spicules; spl = ventromedian supplements. Scale bars = 20 μm
FIGURE 13 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 13 Light micrographs of Longidorus cf. olegi Kankina & Metlitskaya, 1983. (A)–(B) female anterior region. (C)–(F) female lip regions. (G) detail of basal bulb. (H) vulval region. (I)–(L) female tails. (M) and (N), male tail with detail of spicules. (O)–(R) First-, second-, third-, and fourth-stage juvenile (J1–J4) tails, respectively. Abbreviations: a = anus; af = amphidial fovea; gr = guiding ring. Scale bars = 20 μm
FIGURE 14 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 14 Relationship of body length to length of functional and replacement odontostyle (Ost and rOst, respectively) length in all developmental stages from first-stage juveniles (J1) to mature females of Longidorus cf. olegi Kankina & Metlitskaya, 1983
FIGURE 12 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 12 Light micrographs of Longidorus nevesi Macara 1985. (A) female anterior region. (B) female lip region. (C) vulval region. (D) female tail. (E)–(F) male tail with detail of spicules. Abbreviations: a = anus; gr = guiding ring; spl = ventromedian supplements; V = vulva. Scale bars = 20 μm
Figure 11 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
Figure 11 Light micrographs of Longidorus carpetanensis Arias et al., 1986 from Puebla de Sanabria, Zamora (A)–(F), and topotypes from Navalmoral, Avila (G)–(L). A–C, G and H, female anterior regions. D, I, female tails. E and F, J and L, male tail with detail of spicules. Abbreviations: a = anus; gr = guiding ring; spl = ventromedian supplements. Scale bars = 20 µm
FIGURE 9 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 9 Light micrographs of Longidorus pacensis sp. nov. (A)–(G) Anterior regions. (H) Vulval region. (I)–(K) Female tails. (L) Detail of sperm cells. (M) and (N) Male tails. (O)–(R) First-, second-, third-, and fourth-stage juvenile (J1–J4) tails, respectively. Abbreviations: a = anus; af = amphidial fovea; gr = guiding ring; sp = spicules; spl = ventromedian supplements; v = vulva. Scale bars = 20 μm
FIGURE 10 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 10 Light micrographs of Longidorus africanus Merny, 1966. (A) female anterior region. (B) female lip region. (C) vulval region. (D)–(E) female tails. Abbreviations: a = anus; gr = guiding ring; v = vulva. Scale bars = 20 μm
FIGURE 8 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 8 Line drawings of Longidorus pacensis sp. nov. (A) Female neck region. (B) and (C) Female lip regions. (D) and (E) Female tails. (F) Male tail. (G) First-stage juvenile tail
FIGURE 7 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 7 Relationship of body length to length of functional and replacement odontostyle (Ost and rOst, respectively) length in all developmental stages from first-stage juveniles (J1) to mature females of. (A) Longidorus iliturgiensis sp. nov. (B) Longidorus pacensis, sp. nov.
FIGURE 4 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 4 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from cytochrome c oxidase subunit I (CoxI) mtDNA gene sequence alignment under the general time-reversible model of sequence evolution with correction for invariable sites and a gammashaped distribution (GTR + I + G). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site.
FIGURE 6 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 6 Light micrographs of Longidorus iliturgiensis, sp. nov. (A)–(D) Anterior regions. (E) Vulval region. (F)–(I) Female tails. (J)–(M) First-, second-, third-, and fourth-stage juvenile (J1–J4) tails, respectively. (N)–(O) Male tail. Abbreviations: a = anus; af = amphidial fovea; spl = ventromedian supplements; v = vulva. Scale bars (A)–(C), (E)–(O) = 20 μm; (D) = 10 μm
FIGURE 5 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 5 Line drawings of Longidorus iliturgiensis, sp. nov. paratypes. (A) Female neck region. (B) and (C) Female lip regions. (D) and (E) Female tails. (F) Male tail. (G) First-stage juvenile tail
FIGURE 3 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 3 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from 18S rRNA gene sequence alignment under a transitional model with invariable sites and a gamma correction (TIM 2 + I + G). Posterior probabilities greater Downloaded than 0.70 from are Brill given.comfor08/29/ appropriate 2023 05:44:51PM clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changesvia per site free. access
FIGURE 1 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 1 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from D2 and D3 expansion domains of 28S rRNA sequence alignment under an SYM model with invariable sites and a gamma-shaped distribution (SYM + I + G). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site. ** = Branches collapsed, indicating clustered Longidorus species. For a more specific detail of collapsed clades, see supplementary fig. S1.
FIGURE 2 Phylogenetic relationships within the genus Longidorus. Bayesian 50 in Molecular phylogenetic analysis and comparative morphology reveals the diversity and distribution of needle nematodes of the genus Longidorus (Dorylaimida: Longidoridae) from Spain
FIGURE 2 Phylogenetic relationships within the genus Longidorus. Bayesian 50% majority rule consensus tree as inferred from ITS1 rRNA sequence alignment under a 3-parameter model with invariable sites and a gamma-shaped distribution (TPM3 µf + I + G). Posterior probabilities greater than 0.70 are given for appropriate clades. Newly obtained sequences in this study are shown in bold. Scale bar = expected changes per site. Downloaded from Brill.com08/29/2023 05:44:51PM via free access
Data from: Molecular Dating of Phylogeny of Sturgeons (Acipenseridae) Based on Total Evidence Analysis
<p>Bayesian chronograms (original and updated 08.10.2022) of cladogenesis of fossil and recent Acipenseriformes reconstructed on the basis of combined (mtDNA, morphological characters) data.</p>
Reference data and analysis software for "Four-color single-molecule imaging with engineered tags resolves the molecular architecture of signaling complexes in the plasma membrane"
<p>Reference data set for the single molecule co-tracking analysis presented in "Four-color single-molecule imaging with engineered tags resolves the molecular architecture of signaling complexes in the plasma membrane". Corresponding author for further inquiries:</p> <p>Prof. Dr. Jacob Piehler</p> <p>University of Osnabrück, Department of Biology/Chemistry, Division of Biophysics, Barbarastr. 11, 49076 Osnabrück, Germany</p> <p>https://www.biophysik.uni-osnabrueck.de/</p>
Isomorph Invariant Dynamic Mechanical Analysis: A Molecular Dynamics Study
<p>This data set contains the data required to reproduce most of the figures in our paper, [arXiv:2204.06962] which will soon be submitted to a journal. Abstract of the paper:</p> <p>We simulate dynamic mechanical analysis experiments for the Kob-Andersen binary Lennard-Jones system. For this, the SLLOD algorithm with time-dependent strain rates is applied to give a sinusoidally varying strain at different densities and temperatures. The starting point is a temperature scan at a fixed reference density. Isomorph theory predicts that for other densities corresponding temperatures can be identified at which the mechanical properties are unchanged when scaled appropriately. We determine the isomorphically equivalent temperatures by analysing how<br> particle forces change upon scaling configurations to the new density. Loss moduli expressed in suitable reduced units are compared for isomorphic state points. When plotted against the unscaled temperatures, these reduced loss curves are observed to collapse indicating the validity of isomorph theory for dynamic mechanical analysis experiments. Two different methods to determine isomorphic temperatures are considered. While one of them breaks down for the largest density rescalings considered in this study, the other one is still applicable in this region. The decorrelation of force vectors upon rescaling is investigated as a possible origin of this effect. Our results demonstrate that the simplification of the phase diagram entailed by isomorph theory for a wide class of system<br> is relevant also for the mechanical properties of glasses.</p> <p> </p> <p> </p>
Supplementary material 1 from: Gruber S, Haddad C, Kasahara S (2012) Karyotype analysis of seven species of the tribe Lophiohylini (Hylinae, Hylidae, Anura), with conventional and molecular cytogenetic techniques. Comparative Cytogenetics 6(4): 409-423. https://doi.org/10.3897/compcytogen.v6i4.3945
Giemsa-stained metaphases I. a. Aparasphenodon bokermanni, 2n = 24; b. Itapotihyla langsdorffii, 2n = 24; c. Trachycephalus sp., 2n = 24; d. T. mesophaeus, 2n = 24; e. T. typhonius, 2n = 24; f. Phyllodytes edelmoi, 2n = 22. g. P. luteolus, 2n = 22. Bar = 10 m.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.