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Fig. 4 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 4. Right ear and tragus of Miniopterus spp. from Madagascar: A, M. brachytragos (FMNH 175840, holotype), from Parc National de Namoroka, Forêt d'Ambovonomby, 26 km NW Andranomavo; B, M. brachytragos (FMNH 172685) from the Forêt de Binara, near Analamazava River, 7.5 km SW Daraina (village); C, M. brachytragos (FMNH 202523) from 1.8 km S Ambanizana, Masoala Peninsula; D, M. mahafaliensis (FMNH 173197, holotype) from Parc National de Tsimanampetsotsa, 6.5 km NE Efoetse, near Mitoho Cave; E, M. mahafaliensis (FMNH 176101) from Parc National de Kirindy-Mite, near village of Betakilotra, 11 km SE Marofihitsa; F, M. griveaudi (FMNH 184055) from Beloboka, grotte n°1, 12.5 km E Mahajanga, Madagascar; G, M. aelleni (FMNH 175842) from the Parc National de Namoroka, Forêt d'Ambovonomby, 26 km NW Andranomavo. The slightly elongated and pointed distal portion of the tragus in FMNH 175840 (A), as compared to FMNH 172685 and FMNH 202523, maybe an anomalous shape in M. brachytragos.
Fig. 1 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 1. Map of Madagascar showing localities mentioned in the text and sites where specimens of Miniopterus brachytragos sp. nov., M. mahafaliensis sp. nov., M. manavi sensu stricto, M. petersoni, M. griveaudi, and M. aelleni have been collected. The latter two species are also known from the Comoro Archipelago (Goodman et al., 2009b). The species symbols for the sites of Namoroka and Bemaraha have been slightly spread out to avoid obscuring information.
Fig. 2 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 2. Phylogenetic position of different Miniopterus spp. Miniopterus fuliginosus was selected as the outgroup. The tree presented was produced using Bayesian analysis. Posterior probabilities (Bayesian
Figure 5 in Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morhological tools
Figure 5. Graphical polytomous key for identification of species within the R. (P.) marina species complex. A, females from all species, body length vs. body length/tail length; B, females from the clustered species in A, tail length vs. buccal cavity length; C, males from all species, body length vs. body length/tail length; D, males from the clustered species in C, tail length vs. buccal cavity length; F, males from the clustered species in D, body length vs. spicule length.
Figure 2 in Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morhological tools
Figure 2. One of the seven most parsimonious trees of the combined nuclear ITS and D2D3 expansion segments. Values above branches (or indicated by arrow) are bootstrap support from MP, ML and posterior probability values from BA. Only bootstrap values above 50 are indicated. Lineages are indicated next to each branch.
Figure 1 in Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morhological tools
Figure 1. One of the 46 most parsimonious trees based on 396 bp of the mitochondrial COI gene. Values above branches are bootstrap supports from MP, ML, posterior probability values of BA and the number of fixed differences for each branch. Only bootstrap values above 50 are indicated. Lineages are indicated next to each branch. A dash indicates the absence of a branch in the respective analysis.
Fig. 6 in Novel molecular tools to identify Plecotus bats in sympatry and a review of their distribution in Switzerland
Fig. 6. Close-up views of the lower mandible of Plecotus bats illustrating the shape of the chin pad in the three species. Pictures were taken from genetically identified adult long-eared bats from Switzerland or France. In the first column is P. auritus, in the middle column P. macrobullaris and in the third P. austriacus. Notice the particular shape of the chin pad of P. macrobullaris, with elongated tip and distinctly concave sides.
Fig. 5 in Novel molecular tools to identify Plecotus bats in sympatry and a review of their distribution in Switzerland
Fig. 5. Alignment of typical 16S sequences of different Plecotus lineages obtained with the MamP007 primer pair (framed); the expected amplicon size is 110 bp (including primers). Alignment dots represent identical nucleotides.
Fig. 4 in Novel molecular tools to identify Plecotus bats in sympatry and a review of their distribution in Switzerland
Fig. 4. Bivariate plot of the length of upper tooth row (CM3) versus diameter of tympanic bulla (DBT) of 194 skulls of Plecotus. Blue squares represent skulls of P. auritus, violet circles skulls of P. macrobullaris and orange triangles skulls of P. austriacus. Plain symbols indicate genetically identified individuals, while hollow ones are from animals examined for skull morphology only. Coloured boxes indicate the species-specific measurement ranges given by Benda & Ivanova (2003) for Central European Plecotus and the grey bars represent the limit values of the two cranial measurements proposed by Blant et al. (2008) to identify the three species.
Fig. 3 in Novel molecular tools to identify Plecotus bats in sympatry and a review of their distribution in Switzerland
Fig. 3. Map of Switzerland depicting the six biogeographical regions occurring in this country (Gonseth et al., 2001) and the occurrences of 700 genetically identified Plecotus samples. Plain symbols represent locations of P. auritus (in blue), P. austriacus (in orange) and P. macrobullaris (in violet). Symbols with more than one colour represent areas of sympatry. Map produced by the Centre Suisse de Cartographie de la Faune.
Fig. 2 in Novel molecular tools to identify Plecotus bats in sympatry and a review of their distribution in Switzerland
Fig. 2. Species-specific patterns of amplification of 16S fragments obtained in a single PCR cocktail. These fragments were resolved on a 1.6% agarose gel run for about 30 min at 60 V/m. A 100 bp molecular ladder was run on each side of the pictured agarose gel. Amplification products of diagnostic sizes appear on lane 1 for P. macrobullaris (at about 400 bp), on lane 2 for P. austriacus (350 bp), on lane 3 for the 'west' clade of P. auritus (300 bp) and on lane 4 for the 'east' clade of P. auritus (two bands at about 300 and 400 bp, respectively).
Fig. 1 in Novel molecular tools to identify Plecotus bats in sympatry and a review of their distribution in Switzerland
Fig. 1. Skull drawing of a Plecotus austriacus (specimen MHNG 1704.016) illustrating the two cranial measurements examined in this study (DBT and CM3).
Fig. 7. Reconstructed denticles shapes using a in Geometric morphometric on a new species of Trichodinidae. A tool to discriminate trichodinid species combined with traditional morphology and molecular analysis
Fig. 7. Reconstructed denticles shapes using a range of 20 harmonic.
Fig. 6 in Geometric morphometric on a new species of Trichodinidae. A tool to discriminate trichodinid species combined with traditional morphology and molecular analysis
Fig. 6. Fourier harmonic power spectrum based on Elliptical Fourier analysis.
Fig. 3 in The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar
Fig. 3. Photograph of living Miniopterus brachytragos captured near Ambanizana, Masoala Peninsula
Supplementary data for "Testing the efficacy of different molecular tools for parasite conservation genetics: a case study using horsehair worms (Phylum Nematomorpha)"
<p>Supplementary data for "Testing the efficacy of different molecular tools for parasite conservation genetics: a case study using horsehair worms (Phylum Nematomorpha)"</p> <p>alignments: alignments used for BEAST ("bayes") and PopArt ("popart"). The "popart" folder also has a traits file per each species.</p> <p>bayesian_plots: TSVs ("tsv") and PDF files ("ogs") generated by BEAST. The "tsv" folder also has the scripts for plotting the results in R.</p> <p>easysfs: scripts, population file and results from the VCF to SFS conversione done by easySFS.</p> <p>fineRADstructure: fineRADstructure input files and output PDF plots ("plots") for <em>C. formosanus</em> ipyrad and Stacks ("stacks") data. </p> <p>logs: logs for ipyrad, ModelTest, PGDspider, PopArt ("popart") and Stacks ("stacks"). The "popart" folder also have the generated networks in a TXT file. The "stacks" folder also has ODS files for calculating the amount of loci per each M/n fixed value.</p> <p>snapclust: STR files used with R for snapclust. Scripts included.</p> <p>stairway_plot: input (blueprint files) and outputs for Stairway Plot 2 analyses. The <em>C. formosanus</em> folder ("chordodes") also has scripts for R plotting.</p> <p>vcfs: VCF and HDF5 files used in this study. Also scripts for filtering/converting data and plotting the PCA with ipyrad (activate python first!) for <em>C. formosanus</em>.</p> <p>"acutogordius" = <em>A. taiwanensis</em><br> "chordodes" = <em>C. formosanus</em><br> "gordius" = <em>G. chiashanus</em></p>
AutoParams: An Automated Web-Based Tool To Generate Parameters for Molecular Dynamics Simulations
<p>Dataset of thirteen (13) compounds used to test the AutoParams webserver. Includes initial PDB files, generated parameters (mol2/frcmod files), and resulting AMBER-formatted MD inputs (prmtop/inpcrd). Additionally, includes 2D structure in PNG format and canonical SMILES string in .smi file format.</p>
Molecular Breast Imaging as a Screening Tool for Women With Dense Breasts
ClinicalTrials.gov study NCT00620373. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Low Dose Molecular Breast Imaging as a Screening Tool for Women With Dense Breasts
ClinicalTrials.gov study NCT01925170. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Data from:Identifying cryptic mammals with non-invasive methods: An effective molecular species identification tool to survey southern African terrestrial carnivores
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.