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Nitrogen Fertilization Experiment (NFert): Seasonal Biomass and Seasonal and Annual NPP Data at the Sevilleta National Wildlife Refuge, New Mexico
Begun in spring 2004, this long-term study at the Sevilleta LTER examines how fertilization affects above-ground biomass production (ANPP) in a mixed desert-grassland. Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. While measures of both below- and above-ground biomass are important in estimating total NPP, this study focuses on above-ground net primary production (ANPP). Above-ground net primary production is the change in plant biomass, including loss to death and decomposition, over a given period of time. Volumetric measurements are made using vegetation data from permanent plots (SEV155, "Nitrogen Fertilization Experiment (NFert): Net Primary Production Quadrat Data") and regressions correlating species biomass and volume constructed using seasonal harvest weights from SEV157, "Net Primary Productivity (NPP) Weight Data." This site was burned by a prescribed fire in 2003.
Monsoon Rainfall Manipulation Experiment (MRME): Net Primary Production Quadrat Data at the Sevilleta National Wildlife Refuge, New Mexico
The Monsoon Rainfall Manipulation Experiment (MRME) is to understand changes in ecosystem structure and function of a semiarid grassland caused by increased precipitation variability, which alters the pulses of soil moisture that drive primary productivity, community composition, and ecosystem functioning. The overarching hypothesis being tested is that changes in event size and variability will alter grassland productivity, ecosystem processes, and plant community dynamics. In particular, we predict that many small events will increase soil CO2 effluxes by stimulating microbial processes but not plant growth, whereas a small number of large events will increase aboveground net primary production (ANPP) and soil respiration by providing sufficient deep soil moisture to sustain plant growth for longer periods of time during the summer monsoon. To measure ANPP (i.e., the change in plant biomass, represented by stems, flowers, fruit and foliage, over time), the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots. The data from these plots is used to build regressions correlating biomass and volume via weights of select harvested species obtained in SEV157, "Net Primary Productivity (NPP) Weight Data." This biomass data is included in SEV206, "Seasonal Biomass and Seasonal and Annual NPP for the Monsoon (MRME) Study."
Monsoon Rainfall Manipulation Experiment (MRME): Seasonal Biomass and Seasonal and Annual NPP Data at the Sevilleta National Wildlife Refuge, New Mexico
Begun in fall 2006, this long-term study at the Sevilleta LTER examines changes in net primary production (NPP) caused by increased precipitation variability within a semiarid grassland. Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. While measures of both below- and above-ground biomass are important in estimating total NPP, this study focuses on above-ground net primary production (ANPP). Above-ground net primary production is the change in plant biomass, including loss to death and decomposition, over a given period of time. Volumetric measurements are made using vegetation data from permanent plots (SEV188, "Monsoon Rainfall Manipulation Experiment (MRME): Net Primary Production Quadrat Data") and regressions correlating species biomass and volume constructed using seasonal harvest weights from SEV157, "Net Primary Productivity (NPP) Weight Data."
Pinon-Juniper (Core Site) Quadrat Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico
This dataset contains pinon-juniper woodland quadrat data and is part of a long-term study at the Sevilleta LTER measuring net primary production (NPP) across four distinct ecosystems: creosote-dominant shrubland (Site C, est. winter 1999), black grama-dominant grassland (Site G, est. winter 1999), blue grama-dominant grassland (Site B, est. winter 2002), and pinon-juniper woodland (Site P, est. winter 2003). Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and and foliage, over time and incorporates growth as well as loss to death and decomposition. To measure this change the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots within each site. A third sampling at Site C is performed in the winter. The data from these plots is used to build regressions correlating biomass and volume via weights of select harvested species obtained in SEV157, "Net Primary Productivity (NPP) Weight Data." This biomass data is included in SEV182, "Seasonal Biomass and Seasonal and Annual NPP for Core Research Sites."
Pinon-Juniper (Core Site) Seasonal Biomass and Seasonal and Annual NPP Data for the Net Primary Production Study at the Sevilleta National Wildlife Refuge, New Mexico
This dataset contains pinon-juniper woodland biomass data and is part of a long-term study at the Sevilleta LTER measuring net primary production (NPP) across four distinct ecosystems: creosote-dominant shrubland (Site C, est. winter 1999), black grama-dominant grassland (Site G, est. winter 1999), blue grama-dominant grassland (Site B, est. winter 2002), and pinon-juniper woodland (Site P, est. winter 2003). Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and and foliage, over time and incoporates growth as well as loss to death and decomposition. To measure this change the vegetation variables in this dataset, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots within each site. A third sampling at Site C is performed in the winter. Volumetric measurements are made using vegetation data from permanent plots (SEV278, "Pinon-Juniper (Core Site) Quadrat Data for the Net Primary Production Study") and regressions correlating species biomass and volume constructed using seasonal harvest weights from SEV157, "Net Primary Productivity (NPP) Weight Data."
Biome Transition Along Elevational Gradients in New Mexico (SEON) Study: Flux Tower Seasonal Biomass and Seasonal and Annual NPP Data at the Sevilleta National Wildlife Refuge, New Mexico
The varied topography and large elevation gradients that characterize the arid and semi-arid Southwest create a wide range of climatic conditions - and associated biomes - within relatively short distances. This creates an ideal experimental system in which to study the effects of climate on ecosystems. Such studies are critical given that the Southwestern U.S. has already experienced changes in climate that have altered precipitation patterns (Mote et al. 2005), and stands to experience dramatic climate change in the coming decades (Seager et al. 2007; Ting et al. 2007). Climate models currently predict an imminent transition to a warmer, more arid climate in the Southwest (Seager et al. 2007; Ting et al. 2007). Thus, high elevation ecosystems, which currently experience relatively cool and mesic climates, will likely resemble their lower elevation counterparts, which experience a hotter and drier climate. In order to predict regional changes in carbon storage, hydrologic partitioning and water resources in response to these potential shifts, it is critical to understand how both temperature and soil moisture affect processes such as evapotranspiration (ET), total carbon uptake through gross primary production (GPP), ecosystem respiration (Reco), and net ecosystem exchange of carbon, water and energy across elevational gradients. We are using a sequence of six widespread biomes along an elevational gradient in New Mexico -- ranging from hot, arid ecosystems at low elevations to cool, mesic ecosystems at high elevation to test specific hypotheses related to how climatic controls over ecosystem processes change across this gradient. We have an eddy covariance tower and associated meteorological instruments in each biome which we are using to directly measure the exchange of carbon, water and energy between the ecosystem and the atmosphere. This gradient offers us a unique opportunity to test the interactive effects of temperature and soil moisture on ecosystem proces
Effects of Multiple Resource Additions on Community and Ecosystem Processes: NutNet Seasonal Biomass and Seasonal and Annual NPP Data at the Sevilleta National Wildlife Refuge, New Mexico
Two of the most pervasive human impacts on ecosystems are alteration of global nutrient budgets and changes in the abundance and identity of consumers. Fossil fuel combustion and agricultural fertilization have doubled and quintupled, respectively, global pools of nitrogen and phosphorus relative to pre-industrial levels. In spite of the global impacts of these human activities, there have been no globally coordinated experiments to quantify the general impacts on ecological systems. This experiment seeks to determine how nutrient availability controls plant biomass, diversity, and species composition in a desert grassland. This has important implications for understanding how future atmospheric deposition of nutrients (N, S, Ca, K) might affect community and ecosystem-level responses. This study is part of a larger coordinated research network that includes more than 40 grassland sites around the world. By using a standardized experimental setup that is consistent across all study sites, we are addressing the questions of whether diversity and productivity are co-limited by multiple nutrients and if so, whether these trends are predictable on a global scale. Above-ground net primary production is the change in plant biomass, represented by stems, flowers, fruit and and foliage, over time and incoporates growth as well as loss to death and decomposition. To measure this change the vegetation variables, including species composition and the cover and height of individuals, are sampled twice yearly (spring and fall) at permanent 1m x 1m plots within each site. Volumetric measurements are made using vegetation data from permanent plots (SEV231, "Effects of Multiple Resource Additions on Community and Ecosystem Processes: NutNet NPP Quadrat Sampling") and regressions correlating species biomass and volume constructed using seasonal harvest weights from SEV157, "Net Primary Productivity (NPP) Weight Data."
Extreme Drought in Grassland Ecosystems (EDGE) Net Primary Production Quadrat Data at the Sevilleta National Wildlife Refuge, New Mexico
EDGE is located at six grassland sites that encompass a range of ecosystems in the Central US - from desert grasslands to short-, mixed-, and tallgrass prairie. We envision EDGE as a research platform that will not only advance our understanding of patterns and mechanisms of ecosystem sensitivity to climate change, but also will benefit the broader scientific community. Identical infrastructure for manipulating growing season precipitation will be deployed at all sites. Within the relatively large treatment plots (36 m2), we will measure with comparable methods, a broad spectrum of ecological responses particularly related to the interaction between carbon fluxes (NPP, soil respiration) and species response traits, as well as environmental parameters that are critical for the integrated experiment-modeling framework, as well as for site-based analyses. By designing EDGE as a research platform open to the broader scientific community, with subplots in all replicates (n = 180 plots) set-aside for additional studies, and by making data available to the broader ecological community EDGE will have value beyond what we envision here.
Extreme Drought in Grassland Ecosystems (EDGE) Seasonal Biomass and Seasonal and Annual NPP Data at the Sevilleta National Wildlife Refuge, New Mexico
Net primary production is a fundamental ecological variable that quantifies rates of carbon consumption and fixation. Estimates of NPP are important in understanding energy flow at a community level as well as spatial and temporal responses to a range of ecological processes. While measures of both below- and above-ground biomass are important in estimating total NPP, this study focuses on above-ground net primary production (ANPP). Above-ground net primary production is the change in plant biomass, including loss to death and decomposition, over a given period of time. Volumetric measurements are made using vegetation data from permanent plots collected in SEV297, "Extreme Drought in Grassland Ecosystems (EDGE) Net Primary Production Quadrat Data" and regressions correlating biomass and volume constructed using seasonal harvest weights from SEV157, "Net Primary Productivity (NPP) Weight Data."
Small Mammal Exclosure Study (SMES) Vegetation Data from the Chihuahuan Desert Grassland and Shrubland at the Sevilleta National Wildlife Refuge, New Mexico (1995-2009)
This is data for vegetation canopy cover measured from each of the SMES study plots. Vegetation canopy cover was measured from each of the 36 one-meter2 quadrats twice each year. Animal consumers have important roles in ecosystems, determining plant species composition and structure, regulating rates of plant production and nutrient, and altering soil structure and chemistry. The purpose of this study is to determine whether or not the activities of small mammals regulate plant community structure, plant species diversity, and spatial vegetation patterns in Chihuahuan Desert shrublands and grasslands. The purpose of this study is to determine whether or not the activities of small mammals regulate plant community structure, plant species diversity, and spatial vegetation patterns in Chihuahuan Desert shrublands and grasslands. What role if any do indigenous small mammal consumers have in maintaining desertified landscapes in the Chihuahuan Desert? Additionally, how do the effects of small mammals interact with changing climate to affect vegetation patterns over time? This study will provide long-term experimental tests of the roles of consumers on ecosystem pattern and process across a latitudinal climate gradient. The following questions or hypotheses will be addressed. 1) Do small mammals influence patterns of plant species composition and diversity, vegetation structure, and spatial patterns of vegetation canopy cover and biomass in Chihuahuan Desert shrublands and grasslands? Are small mammals keystone species that determine plant species composition and physiognomy of Chihuahuan Desert communities? Do small mammals have a significant role in maintaining the existence of shrub islands and spatial heterogeneity of creosotebush shrub communities? 2) Do small mammals affect the taxonomic composition and spatial pattern of vegetation similarly or differently in grassland communities as compared to shrub communities? How do patterns compare between grassland and shru
Data and R code for Tansley review New Phytologist 2021: "An integrated framework of plant form and function: The belowground perspective"
<p>The files in this archive are related to the paper of Weigelt, Mommer, Andraczek et al. (2021) An integrated framework of plant form and function: The belowground perspective. Tansley Review New Phytologist. The paper developed and tested a new conceptual framework of plant form and function linking above and belowground traits of 2510 species. We found that an integrated, whole-plant trait space required as much as four axes. The two main axes represented the fast-slow ‘conservation’ gradient on which leaf and fine-root traits were well aligned, and the ‘collaboration’ gradient in roots. The two additional axes were separate, orthogonal plant size axes for height and rooting depth.</p> <p>This archives contains four files:</p> <ol> <li><strong>Weigelt et al.2021RCode.DataCleaning.txt</strong> - RCode for the complete data processing starting with the downloaded database files from the Plant Trait Database version 5.0 (TRY, Kattge et al. 2020), the Global Root Trait database (GRooT, Guerrero-Ramirez et al. 2020) and a small number of additional data files listed in Table S2 of the original paper. Additional information was later incorporated using FungalRoot Database (Soudzilovkaia et al. 2020), nodDB Database (Tedersoo et al. 2018) and a compiled dataset on rooting depth (Fan et al. 2017). The code processes, cleans and merges the data and produces a final table for PCA analysis of species specific mean traits. This final table is provided as a second file in this archive (Weigelt_et_al_2021_Main.PCA.Matrix.xlsx). A second part of the RCode.DataCleaning extracts species-specific individual trait data where root and shoot traits were measured on the same plant individual or plot. This data was compiled from 43 studies identified in Table S2 of the original publication. The final table for individual trait data is the third file in this archive (Weigelt_et_al_2021_Individual.PCA.Matrix.xlsx).</li> <li><strong>Weigelt_et_al_2021_Main.PCA.Matrix.xlsx</strong> – Datafile with species-specific global mean trait data for 17 traits of 2510 species with at least one root and one shoot trait available. Meta-data is provided in the data file.</li> <li><strong>Weigelt_et_al_2021_Individual.PCA.Matrix.xlsx</strong> – Datafile with species-specific trait data where root and shoot traits were measured on the same individual or plot for 6 traits of 455 species. Meta-data is provided in the data file.</li> <li><strong>Weigelt et al.2021RCode.Analysis.txt – </strong>RCode for all analyses and figures provided in the paper for both the species mean and individual based dataset. The Code is annotated to help reproducibility of the analysis.</li> </ol>
What does it take to generate new growth - Survey data on company perceptions on innovative behavior
<p>This data includes raw survey data, a codebook and the survey form for the survey <em>what does it take to generate new growth? </em>The survey focused on comprehensively mapping the Finnish companies growth outlooks and their underlying management practices and principles. The study creates an overview of top managers’ views on Finnish companies’ growth, innovativeness, and the ability for renewal. It allows us to identify what sets high-growing companies apart from others. The Codebook is associated with an SPSS and CSV file including the data.</p>
New maps of global geologic provinces and tectonic plates: global tectonics data and QGIS project file
<p>The global tectonics data compilation is a set of raster and vector data that are useful for investigating tectonics past and present. The datasets are useful on their own or can be used in GIS software, which includes the QGIS project file for convenience. The datasets include our new models for tectonic plate boundaries and deformation zones, geologic provinces and orogens. Additional datasets include earthquake and volcano locations, geochronology, topography, magnetics, gravity, and seismic velocity.</p> <p>The global tectonics collection is suitable for research and educational purposes.</p>
New Zealand Hikurangi Margin temperature and pressure loggers - data sets.
<p>Description of data</p> <p>In 2019, 14 RBR data loggers were purchased as a supplement to an existing NSF grant, and were tested, calibrated, and deployed on the Hikurangi Subduction Zone margin as part of the Evan Solomon (UW) deployment of flow meters at this site. The purpose of the Solomon pore fluid analysis program was to determine the impact of Slow Slip Tectonic Events on near-surface fluid flow for this active margin. The purpose of the supplemental RBR loggers, attached directly to fluid flow meters, was to add the key components of pressure and temperature to this data set and specifically to identify any sediment slope failures and turbidity flows that occur during the two year deployment period.</p> <p>By May 6, 2021, all of the Solomon flow meters have been recovered with the attached UW supplemental RBR loggers. The loggers were be subjected to a final ice bath calibration test prior to data-download in New Zealand and all T/P data will be returned to UW via internet. The physical data loggers were then be returned to UW via air freight.</p> <p>The data in these Zenodo data archive files include all of the pre-cruise and post-cruise calibrations fro the RBR T/P loggers, the raw and calibrated data, and the locations of the stations. Also included are some infrastructure information including a multi-channel seismic profile showing that locations on the Hikurangi margin with known fault zones, and a published catalogue of earthquakes that occurred during the logger deployment period.</p> <p> </p>
Data for Tradeoff Analysis of Recovery Pathways post Superstorm Sandy: a New Jersey Case Study - v0.1
<p>Data repository for the manuscript titled: <em>Tradeoff Analysis of Recovery Pathways post Superstorm Sandy: a New Jersey Case Study.</em></p> <p>This repository includes all of the input data, processed data, and output data used for the project. This is a working version of our Tradeoff Analysis ready for interested users, peer reviewers, and others to run. </p> <p>README file on GitHub: https://github.com/Laura-Geronimo/Geronimo-etal_2024_NaturalHazardsReview/blob/main/README.md</p> <p> </p>
Data in New $^{63}$Ga(p,$\gamma$)$^{64}$Ge and $^{64}$Ge(p,$\gamma$)$^{65}$As reaction rates corresponding to the temperature regime of thermonuclear X-ray bursts
<p>Abstract quoted from <a href="https://doi.org/10.1103/PhysRevC.110.065804" target="_blank" rel="noopener">Physical Review C 110 (2024) 065804</a> [<a href="https://arxiv.org/abs/2406.14624">arXiv:2406.14624</a>] </p> <p>We compute the $^{63}$Ga(p,$\gamma$)$^{64}$Ge and $^{64}$Ge(p,$\gamma$)$^{65}$As thermonuclear reaction rates using the latest experimental input supplemented with theoretical nuclear spectroscopic information. The experimental input consists of the latest proton thresholds of $^{64}$Ge and $^{65}$As, and the nuclear spectroscopic information of $^{65}$As, whereas the theoretical nuclear spectroscopic information for $^{64}$Ge and $^{65}$As are deduced from the full <em>pf</em>-shell space configuration-interaction shell-model calculations with the GXPF1A Hamiltonian. Both thermonuclear reaction rates are determined with known uncertainties at the energies that correspond to the Gamow windows of the temperature regime relevant to type I x-ray bursts, covering the typical temperature range of the thermonuclear runaway of the GS 1826$-$24 periodic bursts and SAX J1808.4$-$3658 photospheric radius expansion bursts. </p>
Data on the Netherlands and United Kingdom's Citizens Juries on New Plant Breeding Techniques
<p>This dataset contains the codebooks, code references, and code items for the Netherlands and United Kingdom citizens' juries on new plant breeding techniques. </p> <p>The main folders 01_NLJury_Codes & codebook and 02_UKJury_Codes contain the data for the Netherlands and United Kingdom citizens' juries and the codebook respectively. The juries were four days long and each main folder has four sub-folder which contains the code references and code items for each day of the citizens' jury. Both the main folders also contain a Word document that provides the codebooks for the respective citizens' jury. </p> <p> </p>
Seedling emergence and biomass data of nine dryland plant species characterizing the impact of soil residual auxin herbicide across two soil types and water pulse events on greenhouse growth; Las Cruces, New Mexico, Spring 2021.
Synthetic-auxin herbicides are often used to control woody plants and aid in grassland restoration. Seed-based restoration is common alongside herbicide applications and there may be unintended effects of these herbicides on dryland plant species at the seed and seedling stages. Additionally, abiotic conditions at the time of herbicide application may influence herbicide-soil-plant interactions. We conducted a greenhouse study to examine the effects of a common shrub-control herbicide mix and its interaction with soil type and a post-herbicide water pulse on common desert plant seeds and seedlings. In this greenhouse study, we found that a subset of species responded negatively to soil residual herbicide activity of a mixture of aminopyralid, clopyralid, and triclopyr at the seed and seedling stages. Species sensitive to soil herbicide residues were primarily shrub and forb species that are often the target species of herbicide applications for woody plant control, such as Prosopis glandulosa (honey mesquite) and Larrea tridentata (creosote bush). However, two shrub species (Atriplex canescens [four-wing saltbush] and Yucca elata [soaptree yucca]) and one perennial grass species (Digitaria californica [Arizona cottontop]), which are used in dryland restoration projects, were found to be particularly sensitive to soil residual herbicide activity. Thus, if using these herbicides to control woody plants and restore herbaceous vegetation via active seeding or relying on the in situ seed bank, considerations should be given to what species are used in the seed mix, what species are already present in the soil seed bank, and other details of the circumstances of herbicide application.
New Mexico Motus Prioritization Tool Data
Addressing survival and movement of priority migratory avian species of concern along the Pacific Flyway is paramount for their conservation. Yet, the migratory life stage is understudied in many avian species. The Motus radiotelemetry receiver network is an established system for tracking survival and movement of avian species. This network is an international collaborative that successfully identifies stopover site duration, connected migratory routes, post-fledging dispersal and survival, and adult survival and fidelity on a landscape-scale; parameters that cannot be easily estimated using non-tagged birds. While the Motus network is highly connected in eastern North America, the western part of the continent is lagging in coverage and connectivity, limiting the ability to obtain sample sizes large enough to robustly model demographic parameters from tagged birds. Thus, the expansion of the Motus network is a high priority for Pacific Flyway State Agencies. To date, no method exists for determining priority locations for new Motus receiving stations. With collaborations from States and the Canadian Province of British Columbia, we used eBird citizen scientist data to prioritize strategic locations for new Motus receiving stations throughout the Pacific Flyway. We model priority species’ co-occupancy of varying abundance states (i.e., absent, present, abundant, abundant in multiple weeks) with spatially varying Landsat (red and near infrared), water, land cover types, and weather covariates while accounting for variable detection with temporally varying survey effort covariates. Using occupancy model predictions, we identify high-use areas of the Pacific Flyway for establishing new Motus receiving towers that have high probabilities of intercepting high presence and /or abundance of multiple species of interest in a series of predictive occupancy maps. This package contains all the necessary files to recreate the data analysis, print out maps based on predictions
Limnological data from nearly 400 lakes across the Americas and New Zealand with a focus on vertical profiles of temperature, UV radiation, and optical properties
Two and a half decades of limnological data have been collected from nearly 400 lakes, encompassing a wide range of systems and a broad range of geography. This data set comprises one of the largest and most complete sets of measurements of underwater ultraviolet (UV) transparency available in the world. The data include a suite of 36 variables, with a focus on the optical characteristics. Lakes range from pristine natural lakes to manmade reservoirs. The systems represented in this data set are largely located in North America, from the northeastern United States to Alaska, and alpine and subalpine lakes in the Rocky Mountains of the United States and Canada. Lakes included range from iconic Lake Tahoe, and Castle Lake in northern California, to lakes in the South American Patagonian region, as well as New Zealand. Data were most often collected during the summer, and in some lakes span multiple years (with year-round data since 2006 in Lake Tahoe). The data here are contained in four files, including LakeData.csv, SiteInformation.csv, Methods.csv, and Variables.csv. The main data are in LakeData.csv. SiteInformation.csv, Methods.csv, and Variables.csv support the main data file with descriptions of the sampling sites, methods by which samples were processed, and descriptions of the variables that were measured, respectively. This data set complements the site-intensive limnological data that we published in EDI on 30+ years of data from 3 lakes in the Poconos Mountains region of Pennsylvania, USA. This complementary data set can be accessed at https://portal.edirepository.org/nis/mapbrowse?scope=edi&identifier=186
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.