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130
datasets available to search
ShareScore release 0.9.0
Dataset results
130 results for “online database”
MangroveDB: A comprehensive online database for mangroves based on multi-omics data
<p><span>Mangroves are dominant flora of intertidal zones along tropical and subtropical coastline around the world that offer important ecological and economic value. Recently, the genomes of mangroves have been decoded, and massive omics data were generated and deposited in the public databases. Reanalysis of multi-omics data can provide new biological insights excluded in the original studies. However, the requirements for computational resource and lack of bioinformatics skill for experimental researchers limit the effective use of the original data. To fill this gap, we uniformly processed 942 transcriptome data, 386 whole-genome sequencing data, and provided 13 reference genomes and 40 reference transcriptomes for 53 mangroves. Finally, we built an interactive web-based database platform MangroveDB (https://github.com/Jasonxu0109/MangroveDB), which was designed to provide comprehensive gene expression datasets to </span><span>facilitate their exploration</span><span> and equipped with several online analysis tools, including principal components analysis, differential gene expression analysis, tissue-specific gene expression analysis, GO and KEGG enrichment analysis. MangroveDB not only provides query functions about genes annotation, but also supports some useful visualization functions for analysis results, such as volcano plot, heatmap, dotplot, PCA plot, bubble plot, population structure <em>etc</em>. In conclusion, MangroveDB is a valuable resource for the mangroves research community to efficiently use the massive public omics datasets.</span></p>
OdoBD: An online database for the dragonflies and damselflies of Bangladesh
Open the record for dataset details and reuse information.
Supplementary material 2 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
This spreadsheet contains the information about the specimen API's of GBIF, BOLD Systems, iDigBio, and PlutoF. It lists the endpoints and the documentation URLs in the sheet named "APIs". In the sheet named "Mappings" it lists how to map the non-DwC compliant APIs (BOLD and PlutoF) to DwC-terms.
Supplementary material 3 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
This archive contains XSLT transformations from EML v. 2.1.1 and v. 2.1.0 to Pensoft data paper format.
Supplementary material 1 from: Báthori F, Pfliegler WP, Zimmerman C-U, Tartally A (2017) Online image databases as multi-purpose resources: discovery of a new host ant of Rickia wasmannii Cavara (Ascomycota, Laboulbeniales) by screening AntWeb.org. Journal of Hymenoptera Research 61: 85-94. https://doi.org/10.3897/jhr.61.20255
Online image databases as multi-purpose resources: Rickia wasmannii Cavara (Ascomycota, Laboulbeniales) on a new host ant from a new country by screening AntWeb.org :
FIGURE 78 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 78. Holotype of Mesonauta egregius ICN-MHN 1686 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 77 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 77. Holotype of Cichlasoma microlepis ICN-MHN 95 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 75 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 75. Paratype of Opistognathus fenmutis ICN-MHN 2486 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 74 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 74. Holotype of Halichoeres malpelo ICN-MHN 1784 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 73 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 73. Holotype of Lepidonectes bimaculatus ICN-MHN 1788 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 71 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 71. Paratype of Rivulus stellifer ICN-MHN 700 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 70 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 70. Paratype of Rivulus pacificus ICN-MHN 4151 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 72 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 72. Holotype of Axoclinus rubinoffi ICN-MHN1786 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 76 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 76. Holotype of Biotoecus dicentrarchus ICN-MHN 1400 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 68 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 68. Paratype of Cirrhitichthys coraiicola ICN-MHN 1083 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 69 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 69. Paratype of Pterolebias hoignei ICN-MHN 701 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 67 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 67. Paratype of Lythrypnus minimus ICN-MHN 1072 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 64 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 64. Holotype of Pimelodus garciabarrigai ICN-MHN 744 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 63 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 63. Holotype of Pimelodus crypticus ICN-MHN 16391 (scale bar = 1 cm). Photo by Jorge García Melo.
FIGURE 62 in Historical review, catalog of type specimens and online database of the ichthyology collection of the Instituto de Ciencias Naturales of the Universidad Nacional de Colombia (ICN-MHN)
FIGURE 62. Holotype of Pimelodella floridablancaensis ICN-MHN 13739 (scale bar = 1 cm). Photo by Henry Agudelo.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.